BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg481072
Length=1272
Score E
Sequences producing significant alignments: (Bits) Value
AT2G22090.2 | Symbols: UBA1A | RNA-binding (RRM/RBD/RNP motifs)... 1447 0.0
> AT2G22090.2 | Symbols: UBA1A | RNA-binding (RRM/RBD/RNP motifs)
family protein | chr2:9389000-9390506 REVERSE LENGTH=1507
Length=1507
Score = 1447 bits (783), Expect = 0.0
Identities = 992/1088 (91%), Gaps = 33/1088 (3%)
Strand=Plus/Plus
Query 1 AAATCAAAAATCAAAATCCCTAAAAG---C-T---TC--TTATCCTCAACTACAATGGCG 51
|||||||||||||||||||||||||| | | || |||||||| ||||||||||||
Sbjct 3 AAATCAAAAATCAAAATCCCTAAAAGCTTCTTGACTCGTTTATCCTCTACTACAATGGCG 62
Query 52 AAAACCCTAGACAAATCTAAGAAACGCAAACTCGTGAAATCCAAATCCAAGAAACTCGAG 111
||||||||||||||||||||||| ||||||||||||||||||||||||| ||| ||||
Sbjct 63 AAAACCCTAGACAAATCTAAGAAGCGCAAACTCGTGAAATCCAAATCCACGAATTTCGAT 122
Query 112 AAGAAACAGAAGATT-------AA-AA-AACAACCTGAATCATCGACGCCATATTCAAGT 162
||||||||||||||| || || ||||||| ||||| || |||||||||||||||
Sbjct 123 AAGAAACAGAAGATTAACAAACAACAACAACAACCAGAATCCTCAACGCCATATTCAAGT 182
Query 163 TCAAGCTCAAGCTCTGATTCTAGCGATTCTGAATCAGACAACGAATTCGATCCAGAAGAG 222
|||||||| |||||||||||||||||||| |||||||||||||||||||| |||||||||
Sbjct 183 TCAAGCTCCAGCTCTGATTCTAGCGATTCCGAATCAGACAACGAATTCGACCCAGAAGAG 242
Query 223 CTACGTGAGCTTCTACGACCTTATTCCAAGGACCAGCTCGTCGACCTCGTTTGTTCCGCT 282
|| ||||||||||||| ||||||||||||||||||||| ||||| || ||||||||||||
Sbjct 243 CTCCGTGAGCTTCTACAACCTTATTCCAAGGACCAGCTTGTCGATCTAGTTTGTTCCGCT 302
Query 283 GCGCAAATCGGATCCTCGATCTATTCCGCCGTCGTAGAAGCTGCAGATCGTGATGTTATC 342
| | ||||||||| |||||||||||||||||||||||||| |||||||||||||||| |
Sbjct 303 TCTCGAATCGGATCTTCGATCTATTCCGCCGTCGTAGAAGCCGCAGATCGTGATGTTA-C 361
Query 343 -CATAGGAAAATCTTCGTTTATGGTCTTCCATGGGAGACGACTCGAGAGACTCTTGTT-G 400
|| ||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
Sbjct 362 ACACAGGAAAATCTTCGTTTATGGTCTTCCATGGGAGACGACTCGCGAGACTCTTGTTGG 421
Query 401 ATGTCTTTGAAGGTTATGGAGAGATTGAAGAGTGTACCGTTGTTATAGATAAGGCTACTG 460
| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 422 A-GTCTTTGAAGGTTATGGTGAGATTGAAGAGTGTACCGTTGTTATAGATAAGGCTACTG 480
Query 461 GTAAGGCTAAAGGATTCGGATTTGTTATGTTCAAGACGAGGAAAGGAGCTAAAGAAGCGC 520
||||||||||||| || |||||||||||||||||||| |||||||||||||||||||| |
Sbjct 481 GTAAGGCTAAAGGGTTTGGATTTGTTATGTTCAAGACTAGGAAAGGAGCTAAAGAAGCTC 540
Query 521 TTAAGGAACCGAAGAAGAGGATTCTTAACAGAACTGCGACTTGCCAGCTTGCTTCTATGG 580
|||| ||||||||||||||||||||||| |||||||| ||||||||||||||||||||||
Sbjct 541 TTAAAGAACCGAAGAAGAGGATTCTTAATAGAACTGCCACTTGCCAGCTTGCTTCTATGG 600
Query 581 GGCCTGCGGCGTCGGGAAAGGGGCATGATCAGGCTGGTCCGGTGAAGATTAGTATGGGTT 640
| |||||||| || ||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 601 GTCCTGCGGCTTCAGGAAAGGGGCATGATCAACCTGGTCCGGTGAAGATTAGTATGGGTT 660
Query 641 CGATGGTTAATCAGGGCCAGTCTCAGCAACAGCAGGCGCAAGGGCAACATATGTTTAACG 700
|||||| |||||| || ||| ||||||||||||||| ||||| |||||| |||||||||
Sbjct 661 CGATGGCTAATCATGGACAGCCTCAGCAACAGCAGGTACAAGGTCAACATGTGTTTAACG 720
Query 701 GTGGTGGAATGGCTGCATCGCCGTTTATGTTAGGGAATCAATACCATCCGGTTTATGGAG 760
|||||||||||||||| |||||||||||||||||||| |||||||||||| |||||||||
Sbjct 721 GTGGTGGAATGGCTGCTTCGCCGTTTATGTTAGGGAACCAATACCATCCGCTTTATGGAG 780
Query 761 CCGGAATGTTGGCG-AATCCAGCTTT------AGCAGCAGCAGCTGGTGGAGGTTACATG 813
| || ||||||| | ||||||||||| ||||||||||||||| ||||||||||||
Sbjct 781 CTGGGATGTTGG-GAAATCCAGCTTTAGCAGCAGCAGCAGCAGCTGGGGGAGGTTACATG 839
Query 814 TATCCGATGTTGGCGGGCGCTCTAGCTCATGGTGGGATGGGTTCTGATTTGGTACAGTCT 873
||||||||||| ||||| |||||||| ||||| ||| ||||||||||| |||||||||||
Sbjct 840 TATCCGATGTTAGCGGGTGCTCTAGCACATGGCGGGTTGGGTTCTGATATGGTACAGTCT 899
Query 874 AGTCAAATGGGTGGGATT-G-G-TGACCCAAGCGTTGGTGCTGCTGGTCTGTCAGTTCTT 930
|||||||||||||||||| | | ||| ||||||||||||||||||||||| |||| |||
Sbjct 900 AGTCAAATGGGTGGGATTGGTGTTGATCCAAGCGTTGGTGCTGCTGGTCTTTCAGCTCTA 959
Query 931 GGTTCTTACTTTAGAGGTCAGAGTATGCCTAGTGCTTATCCTGATTCGGATGCTGGTGGA 990
|||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||
Sbjct 960 GGTTCTTACTTTAGAGGTCAGAGTCTGCCTAGTACTTATCCTGATTCGGATGCTGGTGGA 1019
Query 991 AAAAGAGGGACGGGTAAAGATTCGGATGCTGGTGGCTCCTCCTTTCATGGCTACTCAAAC 1050
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1020 AAAAGAGGGACGGGTAAAGATTCGGATGCTGGTGGCTCCTCCTTTCATGGCTACTCAAAC 1079
Query 1051 TATTCATG 1058
||||||||
Sbjct 1080 TATTCATG 1087
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 62549879070
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5