BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg481073
Length=1321
Score E
Sequences producing significant alignments: (Bits) Value
AT2G22100.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) fami... 1753 0.0
> AT2G22100.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr2:9392210-9393562 REVERSE LENGTH=1353
Length=1353
Score = 1753 bits (949), Expect = 0.0
Identities = 1234/1361 (91%), Gaps = 61/1361 (4%)
Strand=Plus/Plus
Query 1 CACTGCCGTCAACAATGGCgaaagaaagagaagaacgtaagaaggagaagaaagagaaga 60
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 4 CACTGCCGTCAACAATGGCGAAAGAAGGAGAAGAACGTAAGAAGGAGAAGAAAGAGAAGA 63
Query 61 aggagaagaaagagaggaaagagaagaagcgtcgcgaggctgaagaactcgcggtgaag- 119
||||| || || ||| |||| |||||||||||| |||||||||||||| || |||
Sbjct 64 AGGAG-AG---GA-AGG--AGAG--GAAGCGTCGCGAAGCTGAAGAACTCGCTGT-AAGA 113
Query 120 gagaagaaaaTCTCAAAAAAGCATAAATCAAAATCCaaaga-gacagagaagcctgagaa 178
|||||||||||||||||||| |||||||| ||||||||||| || |||||| || |||||
Sbjct 114 GAGAAGAAAATCTCAAAAAAACATAAATCGAAATCCAAAGAGGA-AGAGAAACCAGAGAA 172
Query 179 atccaagaagaaatcgaag-aa-ac-acgaagtagaagaaga--ag-aa----ga----g 224
||| ||||||||||||||| || || | |||||||||||||| || || |
Sbjct 173 ATCAAAGAAGAAATCGAAGAAATACGAAGAAGTAGAAGAAGAGGAGAAATCTCCATCTCC 232
Query 225 a----aatctcctaagaaatcgaagaagagcaagaagaaacacaaga-a--atcagatga 277
| ||||||||||||||||||| |||| ||||||||||| |||| | |||||||||
Sbjct 233 ATCTCCATCTCCTAAGAAATCGAAGGAGAGTAAGAAGAAACATAAGAGATCATCAGATGA 292
Query 278 atcCGAAGAGATCGTTGATTCGAAGCCTATTACGGTCCCGATTGTTACCACAAACAATGA 337
||||||||||||||| ||||| |||||| ||||||||||||||||| || || |||
Sbjct 293 ATCCGAAGAGATCGTCGATTCAAAGCCTGTTACGGTCCCGATTGTT---AC---CATTGA 346
Query 338 GTCTGATTCAGATTTTGAATTCGATAAGGAAGATGTTAAGCATCTGCTTGAATCTTACTC 397
||||||||| ||||| |||||||||||||||||| ||||| |||| ||||||||||||||
Sbjct 347 GTCTGATTCTGATTTCGAATTCGATAAGGAAGATATTAAGAATCTACTTGAATCTTACTC 406
Query 398 TAAGGAAGAGCTTATTAACCTAATTTACAAAACTGCTGAGAAAGGTTCTAAATTGATCTC 457
||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 407 TAAAGAGGAGCTTATTAACCTAATTTACAAAACTGCTGAGAAAGGTTCTAAATTGATCTC 466
Query 458 TGCTGTGTTTGAATCAGCGGATAGAGATAGTTCTCAGCGGAACATATTCGTGCGTGGTCT 517
|| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 467 AGCAGTGTTTGAATCAGCGGATAGAGATAGTTCTCAACGGAACATATTCGTGCGTGGTCT 526
Query 518 TGGATGGGATACGACGCATGAGAATCTCAAGGCGGCTTTTGAGGTTTTTGGGGAGATAGA 577
|||||||||||| |||||||||||||||||||||||||||||||||| |||||||||| |
Sbjct 527 TGGATGGGATACAACGCATGAGAATCTCAAGGCGGCTTTTGAGGTTTATGGGGAGATA-A 585
Query 578 -GGAATGTTCTGTGGTTATGGATAAAGATACAGGAAGAGCTAAAGGGTTTGGCTTTGTGT 636
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 586 CGGAATGTTCTGTGGTTATGGATAAAGATACAGGAAGAGCTAAAGGTTTTGGCTTTGTGT 645
Query 637 TGTTTAAGACGCGTAAAGGAGCGAGAGCGGCGTTGAGGAATCCGGAGAAGAGAATGTATA 696
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 646 TGTTTAAGACGCGTAAAGGAGCGAGAGCGGCGTTGAAGAATCCGGAGAAGAGAATGTATA 705
Query 697 ATCGAACTGTGATTTG-TAATCTAGCTAAGCCGTCTACTGCTGGAAAGCCGCGAG----- 750
|||||||||| | ||| | | | ||||| ||||| || | |||||||||| ||||
Sbjct 706 ATCGAACTGTTAGTTGTTTA-CCAGCTAGGCCGTTTAATTCTGGAAAGCCACGAGAACAA 764
Query 751 -AACAACCGGTTGAGTCTGTGAAGATTGATTTGAGTCATACGGCTAATCAGAGTGAAATG 809
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 765 CAACAACCGGTTGAGTCTGTGAAGATTGATTTGAGTCATACGGGTAATCAGAGTGAAATG 824
Query 810 GTTTTGCCTGGGATTGATTTGGCTCATGGACTTGATAAGGGACATCAGCAGCAGCAGAAT 869
| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 825 GCTTTGCCTGGGATTGATTTGGGTCATGGACTTGATAAGGGACATCAGCAGCAGCAGAAT 884
Query 870 ATGCCAATGTATGGTGGACAGAACATGCCCTTTTACGGGCATTCTCAG---CCTCCTGGT 926
||| ||||||||| ||||||||||||||||||||| || ||||||||| |||||||||
Sbjct 885 ATGTCAATGTATGCTGGACAGAACATGCCCTTTTATGGACATTCTCAGCCTCCTCCTGGT 944
Query 927 TTTAATCCGATGTATGGTGCAATGATGGGTAATCCCATGGTTGCTGGTTTACCGAATTAT 986
|||||||| |||||||||||||||||||||||||| |||||||||||||||| |||||||
Sbjct 945 TTTAATCCTATGTATGGTGCAATGATGGGTAATCCGATGGTTGCTGGTTTACAGAATTAT 1004
Query 987 CGTATGTTTGGCTCGGGTATGATGAACCAGGGACCTATGGTGCCACCGAATCATATGGGA 1046
|||||||||||||||||||||||||| || ||||||||| ||||||||||||||||||||
Sbjct 1005 CGTATGTTTGGCTCGGGTATGATGAATCAAGGACCTATGATGCCACCGAATCATATGGGA 1064
Query 1047 ATGGCGGGGCAATATGTTGGTGATGGTAATGTTAATGGTG-T--T---GGTGCTAGTGCT 1100
|||| ||| |||||||||||||||||||||||||| |||| | | |||||| |||||
Sbjct 1065 ATGGTGGGACAATATGTTGGTGATGGTAATGTTAACGGTGTTGGTGCGGGTGCTGGTGCT 1124
Query 1101 GGTACTGGTTTTGATGGTGAACGTGCTTGGTATCTGAGATAAGAGAAACCAAGTGGTATG 1160
||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1125 GGTGCTGGTTTTGATGGTGAACGTGCTTGGTATCTGAGATAAGAGAACCCAAGTGGTATG 1184
Query 1161 ACCTTGTTCTCTGATATTTCAAGTTATAGATTAGGCTAATGATTAGTCCGGTATCTTCGA 1220
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1185 ACCATGTTCTCTGATATTTCAAGTTATAGATTAGGCTAATGATTAGTCCGGTATCTTCGA 1244
Query 1221 CTTCGACTTGATATTTTGGGAATTGCCGGAGtttttttttCGCGTATCTTTATTTTCTAT 1280
|| | ||||||||||||||||||||| |||||||||||| || | |||||||||||||||
Sbjct 1245 CTCCAACTTGATATTTTGGGAATTGCAGGAGTTTTTTTTGCG-G-ATCTTTATTTTCTAT 1302
Query 1281 GCCTGATGTTTCAAACCTACTTTTTTAGTTTCATTATTTAT 1321
|||||||||||||||||||||||||||||||||||||||||
Sbjct 1303 GCCTGATGTTTCAAACCTACTTTTTTAGTTTCATTATTTAT 1343
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 65009705775
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5