BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg481074
Length=1406
Score E
Sequences producing significant alignments: (Bits) Value
AT2G22120.2 | Symbols: | RING/FYVE/PHD zinc finger superfamily... 1943 0.0
> AT2G22120.2 | Symbols: | RING/FYVE/PHD zinc finger superfamily
protein | chr2:9393823-9397022 FORWARD LENGTH=1338
Length=1338
Score = 1943 bits (1052), Expect = 0.0
Identities = 1128/1164 (97%), Gaps = 8/1164 (1%)
Strand=Plus/Plus
Query 1 CAACATTTCTGGTTTTTGTGTGCCGGCGAAGAACCGGTGAGTGACGGGTCAATTCACATA 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 11 CAACATTTCTGGTTTTTGTGTGCCGGCGAAGAACCGGTGAGTGACGGGTCAATTCACATA 70
Query 61 CTTGTTTAACGGCAACAAACACCTACCGATAAAAGCTTAACTAACGAAATCGGATCAGAG 120
||||||||||||||||||| ||||||||||||| ||| ||||||||||||||||||| ||
Sbjct 71 CTTGTTTAACGGCAACAAAAACCTACCGATAAATGCTAAACTAACGAAATCGGATCATAG 130
Query 121 CTCGACG-A-TCT---TC---TCTATTCTCTCTTTCTGGGTATTCGTGGGTTTTACCCAG 172
||||||| | ||| || |||||||||||||||||||||||||||||||||||||||
Sbjct 131 CTCGACGAAGTCTCGATCTTTTCTATTCTCTCTTTCTGGGTATTCGTGGGTTTTACCCAG 190
Query 173 ATTTCAAAATCGAATGGCGGATGAACTGGAATTGTCGCCGTTGGTTCCACCGTCGCCGAT 232
||||| |||| |||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 191 ATTTCGAAATTGAATGGCGGACGAACTGGAATTGTCGCCGTTGGTTCCACCGTCGCCGAT 250
Query 233 GGTGGAGCCTTCTGAGATCGATCTTGAAGCAGGAGGACCTGGTGAACAAATTCAGTGCCG 292
||| |||||||| ||||||||||| ||||| |||||||||||||||||||||||||||||
Sbjct 251 GGTCGAGCCTTCCGAGATCGATCTCGAAGCTGGAGGACCTGGTGAACAAATTCAGTGCCG 310
Query 293 AATCTGCCTTGAAACTGATGGTAGGGATTTCATTGCCCCATGCAAATGCAAAGGAACATC 352
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 311 AATCTGCCTTGAAACTGATGGTAGGGATTTCATTGCCCCATGCAAATGCAAAGGAACATC 370
Query 353 AAAGTATGTACATCGTGATTGCTTGGATCATTGGAGAGCTATAAAGGAAGGTTTTGCATT 412
|||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||
Sbjct 371 AAAGTATGTACATCGTGATTGCTTGGATCATTGGAGAGCTATAAAGGAAGGTTTCGCGTT 430
Query 413 TGCACACTGCACAACTTGCAAGGCTCCATATTATCTGAGAGTTCATAGTGCTGGAGATAG 472
||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 431 TGCGCACTGCACAACTTGCAAGGCTCCATATTATCTGAGAGTTCACAGTGCTGGAGATAG 490
Query 473 GAAATGGCGGACATTGAAGTTTCGCTTCTTTGTTACTCGAGACATTTTATCCATATTTCT 532
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 491 GAAATGGCGGACATTGAAGTTTCGCTTCTTTGTTACTCGAGACATTTTATCCATATTTCT 550
Query 533 TGCTGTTCAGCTTGTGATTGCTGCATTGGCCTACATGGTCTATTTCATTGATAGTTATCA 592
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||
Sbjct 551 TGCTGTTCAGCTTGTGATTGCTGCATTGGCCTACATGGTCTATTTCATAGATAGTTACCA 610
Query 593 GCAATCATGGCTTCGTCATATTTGGGGATTTGACAGTGAGGTCACGTTTTATTACATGTG 652
||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||
Sbjct 611 GCAATCATGGCTTCGTCATATATGGGGTTTTGACAGTGAGGTCACGTTTTATTACATGTG 670
Query 653 TGGAGCTTTATTATTCTTTGCTCTGCTGGGTCTATCTGGATGCGTCATAACCTGCTACGA 712
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 671 TGGAGCTTTATTATTCTTTGCTCTGCTGGGTCTATCTGGATGCGTCATAACCTGCTATGA 730
Query 713 TCGAAGGGTTCGCAATGACTTAGCACAGCCTTGCCGTGAATTGTGTCTCTGTTGCTGTCA 772
|||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||
Sbjct 731 TCGAAGGGTTCGCAATGACTTAGCACAGCCTTGCCGTGAATTGTGTCTCTGTTGTTGCCA 790
Query 773 GCCTGGGATATGCACAGATTGCCATCTACCAGGAACTATTTGTATGTGGGCAGATTGCAC 832
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 791 GCCTGGGATATGCACAGACTGCCATCTACCAGGAACTATTTGTATGTGGGCAGATTGCAC 850
Query 833 CGCATGTACTGAAGGCTGTGCAAGTGCAGTTAGTGAGTGTGGAGGTTGCCTTGGAGGTGC 892
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 851 CGCATGTACTGAAGGCTGTGCAAGTGCAGTTAGTGAGTGTGGAGGTTGCCTTGGAGGTGC 910
Query 893 AGGGGAAGCCGGATTGCCATTACTCTTCATAACGGCATTAGTAATTCTCGGTTTATTTAC 952
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 911 AGGGGAAGCCGGATTGCCATTACTCTTCATAACGGCATTAGTAATTCTCGGTCTATTTAC 970
Query 953 AGTTATCGGTATATTCTATAGCGTATTGGTTGCAACTATGGTTGGACAACGCATTTGGCA 1012
|||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||
Sbjct 971 AGTTATCGGTATATTCTATAGCGTATTGGTTGCAACCATGGTTGGACAGCGCATTTGGCA 1030
Query 1013 GCGCCATTACCACATTCTCGCCAAAAGAATGCTAACAAAGGAGTATGTGGTCGAGGATGT 1072
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1031 GCGCCATTACCACATTCTCGCCAAAAGAATGCTAACAAAGGAGTATGTGGTCGAGGATGT 1090
Query 1073 AGATGGGGAAATGACGGGGTCAGAATGGTCTCCCCCGGCTTTACCAACTGAGCATGTCCA 1132
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1091 AGATGGCGAAATGACGGGGTCAGAATGGTCTCCCCCGGCTTTACCAACTGAGCATGTCCA 1150
Query 1133 GCAGCTGAAGACACTTGGCCTTCT 1156
|||||||||||| |||||||||||
Sbjct 1151 GCAGCTGAAGACGCTTGGCCTTCT 1174
Score = 246 bits (133), Expect = 4e-64
Identities = 143/148 (97%), Gaps = 0/148 (0%)
Strand=Plus/Plus
Query 1259 GAAATCTAATAGATCTTCTGTATTTGTAAAGAAAAGACTCCAACTTATTAGAGAGTCAGT 1318
||||||||||||||||| |||||||||||||||||||||||||||||||| |||||| ||
Sbjct 1181 GAAATCTAATAGATCTTTTGTATTTGTAAAGAAAAGACTCCAACTTATTAAAGAGTCCGT 1240
Query 1319 GATCTCTCCCACTGAGTCAGAGACCTCTCCAATTCACGAACTGAGCTTGTGTTGAATGTT 1378
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1241 GATCTCTCCCATTGAGTCAGAGACCTCTCCAATTCACGAACTGAGCTTGTGTTGAATGTT 1300
Query 1379 TGTTTCTAATATAGATAAATATCCGAAA 1406
|||||||||||||| |||||||||||||
Sbjct 1301 TGTTTCTAATATAGGTAAATATCCGAAA 1328
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 69276752100
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5