BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg481075

Length=515
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G22122.1 | Symbols:  | unknown protein; Has 35333 Blast hits...   599    9e-171


> AT2G22122.1 | Symbols:  | unknown protein; Has 35333 Blast hits 
to 34131 proteins in 2444 species: Archae - 798; Bacteria 
- 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses 
- 0; Other Eukaryotes - 9610 (source: NCBI BLink). | chr2:9403264-9403808 
FORWARD LENGTH=545
Length=545

 Score =  599 bits (324),  Expect = 9e-171
 Identities = 476/544 (88%), Gaps = 31/544 (6%)
 Strand=Plus/Plus

Query  1    CTCATCCTTCACTTCATTATTCTTTTAACCACACTTTCTCTTTGTTTATAATAACAATCA  60
            |||||||||||||||||||||| ||||||||||| ||||||||||| || |||| |||||
Sbjct  4    CTCATCCTTCACTTCATTATTCCTTTAACCACACATTCTCTTTGTTCATTATAATAATCA  63

Query  61   AACTAACTAACATATAACT-GAACTATAAACACAAAATGTCTTCCATGGGAGCAAACTAT  119
            || |||||||||||||| | ||||||||| |||||||||||||| |||||||||||||||
Sbjct  64   AATTAACTAACATATAA-TCGAACTATAATCACAAAATGTCTTCGATGGGAGCAAACTAT  122

Query  120  GCACAACTTCAAGTCATGCagaagaagcagaaggagaaaatgatgaaaaagaagttggag  179
            |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct  123  GCACAACTTCAAGTCATGCAGAAGAAGCAGAAGGAGAAGATGATGAAAAAGAAGTTGGAG  182

Query  180  aagagaagagaTGGCGGCGTAGACGGTGGAGAAGGAGGTGGCGTTTCTTCCGCCGGTAAC  239
            ||||||||||||||||| || ||||||| |||||||||||||||||||||||||||||| 
Sbjct  183  AAGAGAAGAGATGGCGGTGTTGACGGTGAAGAAGGAGGTGGCGTTTCTTCCGCCGGTAAT  242

Query  240  AGAATATTTCCGGTCAAGTCTTCTCCATCGTCGACTTATGAAAAAGTCGAAAGACAAGAG  299
            ||| |||||||||||||||||||||| | ||||||||| |||||||| ||||||||||||
Sbjct  243  AGAGTATTTCCGGTCAAGTCTTCTCCGTTGTCGACTTAAGAAAAAGTAGAAAGACAAGAG  302

Query  300  TGAATTATGAAGTGTGAGATATTT-CTTCTATTTTCAGTTGAATTTatgtgtct-t-tgt  356
            |||||||||||||||||||||||| ||||||||||||||||| ||||||||||| | |||
Sbjct  303  TGAATTATGAAGTGTGAGATATTTTCTTCTATTTTCAGTTGACTTTATGTGTCTCTATGT  362

Query  357  ------gtgtgatgtgatgtgatgtgat-T-CAAGTGGTCGTCTTTTGTATTTAGTCTTT  408
                  ||||||||||||| |||||||| | ||||||||||||||||||||  ||| |  
Sbjct  363  CACTATGTGTGATGTGATGCGATGTGATATACAAGTGGTCGTCTTTTGTATCAAGT-TAC  421

Query  409  -TAAGTTACGTAATTTGTGTTCCttttt---t-t---tt-tA--AA------CTTTGTAT  451
             ||| ||  ||  ||| | ||  |||||   | |   || ||  ||      ||||||||
Sbjct  422  GTAATTTGTGTTCTTTTTTTTTTTTTTTCAATGTCGATTGTATTAAAAAAAACTTTGTAT  481

Query  452  ATTTTCGTAGATTTCAATTAACATGTAAGATATTTCTGTATTGACAATCTATTTTGAAGA  511
            |||||||||||||||||| |||||||||||||| ||| ||||||||||||||||||||| 
Sbjct  482  ATTTTCGTAGATTTCAATCAACATGTAAGATATATCTCTATTGACAATCTATTTTGAAGT  541

Query  512  TTTT  515
            ||||
Sbjct  542  TTTT  545



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 24614732030


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5