BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg481078 Length=1674 Score E Sequences producing significant alignments: (Bits) Value AT2G22140.1 | Symbols: ATEME1B, EME1B | essential meiotic endon... 1993 0.0 > AT2G22140.1 | Symbols: ATEME1B, EME1B | essential meiotic endonuclease 1B | chr2:9414839-9418668 REVERSE LENGTH=1796 Length=1796 Score = 1993 bits (1079), Expect = 0.0 Identities = 1269/1358 (93%), Gaps = 23/1358 (2%) Strand=Plus/Plus Query 1 CGTTATCGGCGATTACGAATTTCATCATCATCAT-ATCTTCCTCGATAATCCCGCGCTCC 59 |||||||||||||| |||| ||| |||||||| ||||||||||||| ||||||||| | Sbjct 1 CGTTATCGGCGATTTCGAAATTC-GAATCATCATCATCTTCCTCGATAGTCCCGCGCT-C 58 Query 60 TG-CGAAATTC-AAATTCTCTCTTCCATGAAGGATCACATTCTGATCTCCGACGGAGAAG 117 | |||||||| ||| ||||||||||||||| ||||||||||| ||||| ||||| || | Sbjct 59 AGTCGAAATTCAAAACTCTCTCTTCCATGAACGATCACATTCTCATCTCTGACGGTGAGG 118 Query 118 ATCAGGCTACTCCACTTCCATCACTGTCGAAGCGTGCTCGAAAAGATCCCATCTCTGCGA 177 ||||| ||||||||||||||||||||||||| || ||||||||| |||| |||||||||| Sbjct 119 ATCAGACTACTCCACTTCCATCACTGTCGAAACGGGCTCGAAAATATCCAATCTCTGCGA 178 Query 178 TACTGATTTCGGATTCAGATCCGACACCGCAGAAGCAACTGCCGGAATCTTCTTCCACTC 237 ||||||| ||||||||||||||||||||||||||||||| |||||||||||||| |||| Sbjct 179 TACTGATATCGGATTCAGATCCGACACCGCAGAAGCAACCGCCGGAATCTTCTTTTACTC 238 Query 238 CT-TTGTTCGTCCCTGATACACCTCTTTCCGATGATTTATCTGTCGTCAAATGTTCCTTT 296 || || ||||||||||| |||||||||||||||||||| ||||||||||| ||||||||| Sbjct 239 CTATT-TTCGTCCCTGAGACACCTCTTTCCGATGATTTCTCTGTCGTCAAGTGTTCCTTT 297 Query 297 GGTTCTGGAGCTTTAGCTTCTAACCGCGAAGACAAATTCTCCGGAAAACGGATAATATCT 356 |||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 298 GGTTCTAGAGCTTTAGCTTCTAACCGCGAAGACAAATTCTCCGGCAAACGGATAATATCT 357 Query 357 CTGGATTCGGAGTTTGAAGACAGTCCTCGACCT-AAATCTTCGAAGAAGTATGAATCCGT 415 |||||||||||||||||||| |||||||||||| ||| ||||||||||| |||||||||| Sbjct 358 CTGGATTCGGAGTTTGAAGATAGTCCTCGACCTGAAA-CTTCGAAGAAGAATGAATCCGT 416 Query 416 GCTTGCTGGTTTTAGGGAGCCACGTTTTGGATTGGAAGCTGGAACCAGTGAGGCATACTA 475 |||||||||||| |||||||| || |||||||||||||| | |||||||||||||||||| Sbjct 417 GCTTGCTGGTTTAAGGGAGCCTCGGTTTGGATTGGAAGCCGAAACCAGTGAGGCATACTA 476 Query 476 TAAGAATACTAGAAGAACTGAGACAAATTTAGATGATAATACTAATTGGATGCATGAAGT 535 |||||||||||||| | |||||||||||||||| ||| |||||| ||||||||||||||| Sbjct 477 TAAGAATACTAGAATACCTGAGACAAATTTAGACGATGATACTAGTTGGATGCATGAAGT 536 Query 536 TAGTTTTCGCTCTTCG-CAGACTAATGATACTATCGAGGTTGATTCTGACCAAGAAAAAG 594 ||||||||||||||| || |||||||||||||| ||||||| ||||||||||||||||| Sbjct 537 CAGTTTTCGCTCTTCGCCA-ACTAATGATACTATTGAGGTTGTTTCTGACCAAGAAAAAG 595 Query 595 AGGATATAAGCGTTGAGAAAATGGGTCGAAAAAATAAGATCAGAACTACAA--C-T-C-- 648 |||||||||||||||||||||| ||||||||||| |||||||||||||||| | | | Sbjct 596 AGGATATAAGCGTTGAGAAAATTGGTCGAAAAAAGAAGATCAGAACTACAACTCTTCCAG 655 Query 649 TTCCAGGTGAGGCATTGCCAAAAAAGCAGCTGTCGAAGGCAGACAAAACATGTGCAATGG 708 ||||||||||||||||||||||||||| || |||||||| |||||||||| ||||||||| Sbjct 656 TTCCAGGTGAGGCATTGCCAAAAAAGCGGCAGTCGAAGGAAGACAAAACAAGTGCAATGG 715 Query 709 AGgaaaagaagttaagaaaagagcaagagagattagagaaagcagccttaaaagcagaag 768 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 716 AGGAAAAGAAGTTAAGAAAAGAGCAAGAGAGATTAGAGAAAGCAGCCTCAAAAGCAGAAG 775 Query 769 aagctgagcgtaaaagattagagaaggaaaagaaaaaatgggaaaagggaaagTTAGCCC 828 | |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 776 AGGCTGAGCGTAAAAGATTAGAGAAGGAGAAGAAAAAATGGGAAAAGGGAAAGTTAGCCC 835 Query 829 TTAAATCTATTGTTGCCGAGATTGATACTAAAGTGGTTGAAGGATCCATTGGAGGACTTC 888 ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 836 TTAAATCTATTGTTGCCGAGATTGATACTAAAGTGCTTGAAGGATCCATTGGAGGACTTC 895 Query 889 TGCTTTCAAGGTTCTCTGAGAAAGGCATTACAATCCATGTAGGCCCTAATCCAATTGAGA 948 ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 896 TGCTTTCAAGGTTCTCTGAGAAAGGCATTACAATCCACGTAGGCCCTAATCCAATTGAGA 955 Query 949 GATCCATTGTGTGGACAATGACAATTCCAGA-GAGTATTGCTCCGCTTTTTCCCCAAGGG 1007 |||||||||||||||| |||||||||||||| || ||||||||||||||| ||||||||| Sbjct 956 GATCCATTGTGTGGACGATGACAATTCCAGAGGA-TATTGCTCCGCTTTTCCCCCAAGGG 1014 Query 1008 CCGAAGATTCCTTATGTGCTACTTGTATATGAAGCTGAAGAATTTTGTAATCTTGTTGCT 1067 || |||||||||||| |||||||||| ||||| ||||||||||||||||||||||||||| Sbjct 1015 CCCAAGATTCCTTATTTGCTACTTGTGTATGACGCTGAAGAATTTTGTAATCTTGTTGCT 1074 Query 1068 AAT-GAAAAGTTTCTAGAAAACATCTCAAGAGTTCAGGACCGATACCCAT-TTCATACGG 1125 ||| ||||| |||||||||| ||||||||||||||||||| ||||||||| || |||||| Sbjct 1075 AATGGAAAA-TTTCTAGAAATCATCTCAAGAGTTCAGGACAGATACCCATCTT-ATACGG 1132 Query 1126 TGTGCTGCCTCACCAATAAGTTAATGTCGTACGTAAAGAAAAGGGAAAAGGAAGAGTACA 1185 ||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 1133 TGTGCTGCCTCACGAATAAGTTAATGTCCTACGTAAAGAAAAGGGAAAAGGAAGAGTACA 1192 Query 1186 AAAACCCGGGAAATTGGAGACGGCCTCCTATCGATGAGGTACTTGCAAAATTAACTACTC 1245 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1193 AAAATCCGGGAAATTGGAGACGGCCTCCTATCGATGAGGTACTTGCAAAATTAACTACTC 1252 Query 1246 ACTATGTTAAAGTACATTCCAGACACTGTGTAGACGAGGCTGAGGTGGCTGAACATGTTG 1305 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 1253 ACTATGTTAAAGTACATTCCAGACACTGTGTAGACGAGGCTGAGGTGGCTGAACATATTG 1312 Query 1306 TTGGCCTAACAAGCAGTCTAGCCTCTTGCCAATTTAGG 1343 ||||||||||||||||||| |||||||||||||| ||| Sbjct 1313 TTGGCCTAACAAGCAGTCTGGCCTCTTGCCAATTCAGG 1350 Score = 521 bits (282), Expect = 7e-147 Identities = 302/312 (97%), Gaps = 0/312 (0%) Strand=Plus/Plus Query 1342 GGTTAAAAGCGTTAGTAGCAATACCAAAGGTGCAGCCACGATACGCTTTAGCAGTGTGGA 1401 ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 1439 GGTTAAAAGCGTTAGTAGCAATACCAAAGGTACAGCCACGATACGCTTTAGCAGTGTGGA 1498 Query 1402 AGAAATATCCCTCCATGAAGTCTCTTCTTAAGGTTTATCTGGACCGTAACAAATCGGTTC 1461 |||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||| Sbjct 1499 AGAAATATCCCTCCATGAAGTCTCTTCTTAAGGTTTATATGGATCGTAACAAATCGGTTC 1558 Query 1462 ATGAGAAGGAGTTTCTACTAAAAGACTTGAAAGTGGAAGGTTTAGTGGGAGGAGACATAA 1521 |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 1559 ATGAGAAGGAGTTTCTACTAAAAGACTTGAAAGTAGAAGGTTTAGTGGGAGGAGACATAA 1618 Query 1522 GGTTAGGTGAGATTTGTTCAAAGCGGATATACAGAGTTCTCATGTCTCACAATGGAGCCA 1581 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 1619 GGTTAGGTGAGATTTGTTCAAAGCGGATATACAGAGTTCTCATGTCTCACGATGGAGCCA 1678 Query 1582 TTAAGACGGATGACGTCGAAAATGGTGCTGCTTTCTTTACAGTTTCTCCAGGTGTTAATT 1641 ||||||| ||||||||||||||||||||||||||||| || | ||||||||||||||||| Sbjct 1679 TTAAGACTGATGACGTCGAAAATGGTGCTGCTTTCTTCACCGATTCTCCAGGTGTTAATT 1738 Query 1642 AGAGTCGAAGAG 1653 |||||| ||||| Sbjct 1739 AGAGTCAAAGAG 1750 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 82730498160 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5