BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg481078
Length=1674
Score E
Sequences producing significant alignments: (Bits) Value
AT2G22140.1 | Symbols: ATEME1B, EME1B | essential meiotic endon... 1993 0.0
> AT2G22140.1 | Symbols: ATEME1B, EME1B | essential meiotic endonuclease
1B | chr2:9414839-9418668 REVERSE LENGTH=1796
Length=1796
Score = 1993 bits (1079), Expect = 0.0
Identities = 1269/1358 (93%), Gaps = 23/1358 (2%)
Strand=Plus/Plus
Query 1 CGTTATCGGCGATTACGAATTTCATCATCATCAT-ATCTTCCTCGATAATCCCGCGCTCC 59
|||||||||||||| |||| ||| |||||||| ||||||||||||| ||||||||| |
Sbjct 1 CGTTATCGGCGATTTCGAAATTC-GAATCATCATCATCTTCCTCGATAGTCCCGCGCT-C 58
Query 60 TG-CGAAATTC-AAATTCTCTCTTCCATGAAGGATCACATTCTGATCTCCGACGGAGAAG 117
| |||||||| ||| ||||||||||||||| ||||||||||| ||||| ||||| || |
Sbjct 59 AGTCGAAATTCAAAACTCTCTCTTCCATGAACGATCACATTCTCATCTCTGACGGTGAGG 118
Query 118 ATCAGGCTACTCCACTTCCATCACTGTCGAAGCGTGCTCGAAAAGATCCCATCTCTGCGA 177
||||| ||||||||||||||||||||||||| || ||||||||| |||| ||||||||||
Sbjct 119 ATCAGACTACTCCACTTCCATCACTGTCGAAACGGGCTCGAAAATATCCAATCTCTGCGA 178
Query 178 TACTGATTTCGGATTCAGATCCGACACCGCAGAAGCAACTGCCGGAATCTTCTTCCACTC 237
||||||| ||||||||||||||||||||||||||||||| |||||||||||||| ||||
Sbjct 179 TACTGATATCGGATTCAGATCCGACACCGCAGAAGCAACCGCCGGAATCTTCTTTTACTC 238
Query 238 CT-TTGTTCGTCCCTGATACACCTCTTTCCGATGATTTATCTGTCGTCAAATGTTCCTTT 296
|| || ||||||||||| |||||||||||||||||||| ||||||||||| |||||||||
Sbjct 239 CTATT-TTCGTCCCTGAGACACCTCTTTCCGATGATTTCTCTGTCGTCAAGTGTTCCTTT 297
Query 297 GGTTCTGGAGCTTTAGCTTCTAACCGCGAAGACAAATTCTCCGGAAAACGGATAATATCT 356
|||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 298 GGTTCTAGAGCTTTAGCTTCTAACCGCGAAGACAAATTCTCCGGCAAACGGATAATATCT 357
Query 357 CTGGATTCGGAGTTTGAAGACAGTCCTCGACCT-AAATCTTCGAAGAAGTATGAATCCGT 415
|||||||||||||||||||| |||||||||||| ||| ||||||||||| ||||||||||
Sbjct 358 CTGGATTCGGAGTTTGAAGATAGTCCTCGACCTGAAA-CTTCGAAGAAGAATGAATCCGT 416
Query 416 GCTTGCTGGTTTTAGGGAGCCACGTTTTGGATTGGAAGCTGGAACCAGTGAGGCATACTA 475
|||||||||||| |||||||| || |||||||||||||| | ||||||||||||||||||
Sbjct 417 GCTTGCTGGTTTAAGGGAGCCTCGGTTTGGATTGGAAGCCGAAACCAGTGAGGCATACTA 476
Query 476 TAAGAATACTAGAAGAACTGAGACAAATTTAGATGATAATACTAATTGGATGCATGAAGT 535
|||||||||||||| | |||||||||||||||| ||| |||||| |||||||||||||||
Sbjct 477 TAAGAATACTAGAATACCTGAGACAAATTTAGACGATGATACTAGTTGGATGCATGAAGT 536
Query 536 TAGTTTTCGCTCTTCG-CAGACTAATGATACTATCGAGGTTGATTCTGACCAAGAAAAAG 594
||||||||||||||| || |||||||||||||| ||||||| |||||||||||||||||
Sbjct 537 CAGTTTTCGCTCTTCGCCA-ACTAATGATACTATTGAGGTTGTTTCTGACCAAGAAAAAG 595
Query 595 AGGATATAAGCGTTGAGAAAATGGGTCGAAAAAATAAGATCAGAACTACAA--C-T-C-- 648
|||||||||||||||||||||| ||||||||||| |||||||||||||||| | | |
Sbjct 596 AGGATATAAGCGTTGAGAAAATTGGTCGAAAAAAGAAGATCAGAACTACAACTCTTCCAG 655
Query 649 TTCCAGGTGAGGCATTGCCAAAAAAGCAGCTGTCGAAGGCAGACAAAACATGTGCAATGG 708
||||||||||||||||||||||||||| || |||||||| |||||||||| |||||||||
Sbjct 656 TTCCAGGTGAGGCATTGCCAAAAAAGCGGCAGTCGAAGGAAGACAAAACAAGTGCAATGG 715
Query 709 AGgaaaagaagttaagaaaagagcaagagagattagagaaagcagccttaaaagcagaag 768
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 716 AGGAAAAGAAGTTAAGAAAAGAGCAAGAGAGATTAGAGAAAGCAGCCTCAAAAGCAGAAG 775
Query 769 aagctgagcgtaaaagattagagaaggaaaagaaaaaatgggaaaagggaaagTTAGCCC 828
| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 776 AGGCTGAGCGTAAAAGATTAGAGAAGGAGAAGAAAAAATGGGAAAAGGGAAAGTTAGCCC 835
Query 829 TTAAATCTATTGTTGCCGAGATTGATACTAAAGTGGTTGAAGGATCCATTGGAGGACTTC 888
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 836 TTAAATCTATTGTTGCCGAGATTGATACTAAAGTGCTTGAAGGATCCATTGGAGGACTTC 895
Query 889 TGCTTTCAAGGTTCTCTGAGAAAGGCATTACAATCCATGTAGGCCCTAATCCAATTGAGA 948
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 896 TGCTTTCAAGGTTCTCTGAGAAAGGCATTACAATCCACGTAGGCCCTAATCCAATTGAGA 955
Query 949 GATCCATTGTGTGGACAATGACAATTCCAGA-GAGTATTGCTCCGCTTTTTCCCCAAGGG 1007
|||||||||||||||| |||||||||||||| || ||||||||||||||| |||||||||
Sbjct 956 GATCCATTGTGTGGACGATGACAATTCCAGAGGA-TATTGCTCCGCTTTTCCCCCAAGGG 1014
Query 1008 CCGAAGATTCCTTATGTGCTACTTGTATATGAAGCTGAAGAATTTTGTAATCTTGTTGCT 1067
|| |||||||||||| |||||||||| ||||| |||||||||||||||||||||||||||
Sbjct 1015 CCCAAGATTCCTTATTTGCTACTTGTGTATGACGCTGAAGAATTTTGTAATCTTGTTGCT 1074
Query 1068 AAT-GAAAAGTTTCTAGAAAACATCTCAAGAGTTCAGGACCGATACCCAT-TTCATACGG 1125
||| ||||| |||||||||| ||||||||||||||||||| ||||||||| || ||||||
Sbjct 1075 AATGGAAAA-TTTCTAGAAATCATCTCAAGAGTTCAGGACAGATACCCATCTT-ATACGG 1132
Query 1126 TGTGCTGCCTCACCAATAAGTTAATGTCGTACGTAAAGAAAAGGGAAAAGGAAGAGTACA 1185
||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1133 TGTGCTGCCTCACGAATAAGTTAATGTCCTACGTAAAGAAAAGGGAAAAGGAAGAGTACA 1192
Query 1186 AAAACCCGGGAAATTGGAGACGGCCTCCTATCGATGAGGTACTTGCAAAATTAACTACTC 1245
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1193 AAAATCCGGGAAATTGGAGACGGCCTCCTATCGATGAGGTACTTGCAAAATTAACTACTC 1252
Query 1246 ACTATGTTAAAGTACATTCCAGACACTGTGTAGACGAGGCTGAGGTGGCTGAACATGTTG 1305
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1253 ACTATGTTAAAGTACATTCCAGACACTGTGTAGACGAGGCTGAGGTGGCTGAACATATTG 1312
Query 1306 TTGGCCTAACAAGCAGTCTAGCCTCTTGCCAATTTAGG 1343
||||||||||||||||||| |||||||||||||| |||
Sbjct 1313 TTGGCCTAACAAGCAGTCTGGCCTCTTGCCAATTCAGG 1350
Score = 521 bits (282), Expect = 7e-147
Identities = 302/312 (97%), Gaps = 0/312 (0%)
Strand=Plus/Plus
Query 1342 GGTTAAAAGCGTTAGTAGCAATACCAAAGGTGCAGCCACGATACGCTTTAGCAGTGTGGA 1401
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1439 GGTTAAAAGCGTTAGTAGCAATACCAAAGGTACAGCCACGATACGCTTTAGCAGTGTGGA 1498
Query 1402 AGAAATATCCCTCCATGAAGTCTCTTCTTAAGGTTTATCTGGACCGTAACAAATCGGTTC 1461
|||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||
Sbjct 1499 AGAAATATCCCTCCATGAAGTCTCTTCTTAAGGTTTATATGGATCGTAACAAATCGGTTC 1558
Query 1462 ATGAGAAGGAGTTTCTACTAAAAGACTTGAAAGTGGAAGGTTTAGTGGGAGGAGACATAA 1521
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1559 ATGAGAAGGAGTTTCTACTAAAAGACTTGAAAGTAGAAGGTTTAGTGGGAGGAGACATAA 1618
Query 1522 GGTTAGGTGAGATTTGTTCAAAGCGGATATACAGAGTTCTCATGTCTCACAATGGAGCCA 1581
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1619 GGTTAGGTGAGATTTGTTCAAAGCGGATATACAGAGTTCTCATGTCTCACGATGGAGCCA 1678
Query 1582 TTAAGACGGATGACGTCGAAAATGGTGCTGCTTTCTTTACAGTTTCTCCAGGTGTTAATT 1641
||||||| ||||||||||||||||||||||||||||| || | |||||||||||||||||
Sbjct 1679 TTAAGACTGATGACGTCGAAAATGGTGCTGCTTTCTTCACCGATTCTCCAGGTGTTAATT 1738
Query 1642 AGAGTCGAAGAG 1653
|||||| |||||
Sbjct 1739 AGAGTCAAAGAG 1750
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 82730498160
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5