BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg481081
Length=2055
Score E
Sequences producing significant alignments: (Bits) Value
AT2G21630.1 | Symbols: | Sec23/Sec24 protein transport family ... 1295 0.0
> AT2G21630.1 | Symbols: | Sec23/Sec24 protein transport family
protein | chr2:9250323-9253915 FORWARD LENGTH=2395
Length=2395
Score = 1295 bits (701), Expect = 0.0
Identities = 906/1002 (90%), Gaps = 25/1002 (2%)
Strand=Plus/Plus
Query 1071 GGGAATTATTGGCCCTTGCGCATCTCTCGAAAAGAAAGGACCGTTGTGCTCTGACACTGC 1130
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1277 GGGAATTATTGGCCCTTGCGCATCTCTCGAAAAGAAAGGACCGTTGTGCTCTGACACTGC 1336
Query 1131 CGTCGGTCAGGGACACACAAGCGCATGGAAGATGTGTGGCCTTGACAAAAACACTTCCAT 1190
| |||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||
Sbjct 1337 CATCGGTCAGGGACACACAAGCGCATGGAAGATGTGTGGCCTCGACAACAACACTTCCAT 1396
Query 1191 ATGTTTGGTTTTTGAAATTGCTAAAAGGGATACAGCTGATGTTGTTTTGCAGTCGCAGAG 1250
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1397 ATGTTTGGTTTTTGAAATTGCTAAAATAGATACAGCTGATGTTGTTTTGCAGTCGCAGAG 1456
Query 1251 CAATCAGTTTTACTTTCAATTTTTAACATATTATGGATCTATTAGCACTCAAATGGTCAA 1310
|||||||||||||||||||||||| || || | |||| |||||||||||||||||
Sbjct 1457 CAATCAGTTTTACTTTCAATTTTTGAC-----AT--A-CTATCAGCACTCAAATGGTCAA 1508
Query 1311 ACAAGACTCC-GGT-A-ATC-CATTC--GAAGCCAGGT-TTGAAAATTG---G-TCAGTG 1359
|||||||||| ||| | | | | ||| |||| ||| || || || | | | |
Sbjct 1509 ACAAGACTCCGGGTAACAACTCTTTCTAGAAGATGGGTAATGGGAACTGAAAGCTTACAG 1568
Query 1360 GAGTTGAGCAATGGTTTCGACCAAGAAGCAGCTGCTGTAGTCATGGCACGGCTTATTTCT 1419
||||||||||||||||| ||||||||||||||||||||||| |||||||| ||||||||
Sbjct 1569 GAGTTGAGCAATGGTTTTGACCAAGAAGCAGCTGCTGTAGTAATGGCACGACTTATTTCC 1628
Query 1420 TTTAAAAT--TG--T--TTCTTACTTTAATCCCCAAAGGTGGGTCGATAAAGCTTTGATA 1473
| ||||| | | || | ||||||||||||||||||||||||||||| ||||||
Sbjct 1629 TCCAAAATGGAGACTCAGCCTGAGTTTAATCCCCAAAGGTGGGTCGATAAAGCGTTGATA 1688
Query 1474 AATCTATGTACCTGGTTTGGAGATTACCAAAAAGGCAATCCTTCTTCGTTTAACTTGTCG 1533
|||||||| |||||||||||||||||||| ||||||||||||||||| |||| ||| ||
Sbjct 1689 AATCTATGCACCTGGTTTGGAGATTACCAGAAAGGCAATCCTTCTTCCTTTAGCTTATCT 1748
Query 1534 TCTCAGTTATCAATTTTCCCGCAGTTTGTATTTCACTTGCGCCGATCTCAGTTTGTCCAG 1593
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1749 TCTCAGTTATCAATTTTCCCGCAGTTTGTGTTTCACTTGCGCCGATCTCAGTTTGTCCAG 1808
Query 1594 GTCTTTAACAACAGCCCAGACGAGACAGCATATTTTCGAATGATATTGTACAGAGAGAAC 1653
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1809 GTCTTTAACAACAGCCCAGACGAGACAGCATATTTTCGAATGATATTGTACAGAGAGAAC 1868
Query 1654 GTTTCTAATTCAATCGTGATGATTCAACCTTCACTGATTTCTTTCTCATTCCATTCACCG 1713
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1869 GTTTCTAATTCAGTCGTGATGATTCAACCTTCACTGATTTCTTTCTCATTCCATTCACCG 1928
Query 1714 GCAGAACCAATTCTCCTGGATGTAGCATCCATTGCAGCTTACAGAATCCTACTGTTGGAT 1773
|||| |||||||| || ||||||||||||||||||||| |||||||| |||||||||||
Sbjct 1929 CCAGAGCCAATTCTTCTTGATGTAGCATCCATTGCAGCTGACAGAATCTTACTGTTGGAT 1988
Query 1774 TCATACTTTACTCTTGTAATATTTCACGGTTCTACCATTGCCCAATGGCGAAAAGCTGGA 1833
|||||||| || ||||||||||||||||| ||||| || || ||||||||||||||||||
Sbjct 1989 TCATACTTCACCCTTGTAATATTTCACGGCTCTACAATCGCTCAATGGCGAAAAGCTGGA 2048
Query 1834 TACCATAATCAACCTGAACATCAGGCATTTGAGCATCTGTTGCAATCACCTCGTAACTAT 1893
|||||||||||||||||||| |||||||||| |||||||||||| ||||||||| ||||
Sbjct 2049 TACCATAATCAACCTGAACACCAGGCATTTGGGCATCTGTTGCAGTCACCTCGTGACTAC 2108
Query 1894 GCAGATACAATCGTCAGTGAACGGTTTCCCACTCCGCGTCTTGTCACATGCGATCAGTAT 1953
||||| |||||| | |||||| |||||||||||||||||||||| | |||||||||||||
Sbjct 2109 GCAGACACAATCATGAGTGAAAGGTTTCCCACTCCGCGTCTTGTTATATGCGATCAGTAT 2168
Query 1954 GGTTCACAGGCTCGTTTTCTTCTAGCAAAACTGAATCCTTCTGATGGTGAAGCTCCTCTT 2013
|||||||||||||||||||||||||||||||||||||||| |||||| || |||| | ||
Sbjct 2169 GGTTCACAGGCTCGTTTTCTTCTAGCAAAACTGAATCCTTGTGATGGAGATGCTCATTTT 2228
Query 2014 TCCGGGGAGAGTAATGTTTTCACAGATGATGTTAGCTTGTCT 2055
||||| | |||||||||||||| ||||||||||||||||||
Sbjct 2229 TCCGGCCAAAGTAATGTTTTCACGGATGATGTTAGCTTGTCT 2270
Score = 1120 bits (606), Expect = 0.0
Identities = 661/688 (96%), Gaps = 2/688 (0%)
Strand=Plus/Plus
Query 375 GCTTGGATTCTCACACTGCACCAAATCTTACATT-TTCCATGGAAACAAAGACTGTACTA 433
|||||||||| ||||||| |||||||||||| || |||||||||||||||||||||||||
Sbjct 548 GCTTGGATTCCCACACTGTACCAAATCTTAC-TTCTTCCATGGAAACAAAGACTGTACTA 606
Query 434 AAGATCAGCTCTTGGATCAGCTGAGTTTCTTCGTCAAGAACCCTAAACCTTCTTCAGGTG 493
|||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 607 AAGATCAGCTTTTGGATCAGCTGAGTTTCTTCGTCAAGAATCCTAAACCTTCTTCAGGTG 666
Query 494 TCATTGCTGGTGCTAGAGATGGTCTCTCTTCCGACGACATTGCACGGTTTCTGTTACCGG 553
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
Sbjct 667 TCATTGCTGGTGCTAGAGATGGTCTCTCTTCCGACGACATTGCTCGGTTTCTGTTACCTG 726
Query 554 TCTCCGATTGCCAGTTTACTCTTCACTCTGTTCTTGAGGAGCTGGGAAACAATCCCTGGC 613
||| |||||||| ||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 727 CCTCTGATTGCCACTTTACTCTTCACTCTGTTCTTGAGGAGCTGGGAAACAGTCCCTGGC 786
Query 614 CCGTTGCAGCTGATCACCGTCCTGCGAGATGCACTGGTGTTGCTCTCCGAATCTCTGCTG 673
||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||
Sbjct 787 CCGTTGCAGCTGATCACCGTCCTGCGAGATGCACTGGTGTTGCTCTCCGTATCGCTGCTA 846
Query 674 GTCTCTTAGGAGCTTGCTTTCCTGGCTCTGCTGCTAGAATCATGGCTTTTATTGGTGGAC 733
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 847 GTCTCTTAGGAGCTTGCTTTCCTGGCTCTGCTGCTAGAATCATGGCTTTTATTGGTGGAC 906
Query 734 CTTCCACTGAAGGACCTGGAGCTATTGTTTCCCGGGAGCTTTCGGATCCAATTCGTTCTC 793
|||||||| |||| ||||||||||||||||| ||||||||||||||||| ||||||||||
Sbjct 907 CTTCCACTCAAGGCCCTGGAGCTATTGTTTCTCGGGAGCTTTCGGATCCTATTCGTTCTC 966
Query 794 ATAAGGACATTGATAAAGATTCTGCTACGTATTACTACAAAGCTGTCGAATTCTATGAGA 853
||||||| ||||||||||||||||||| ||||||| |||||||||| |||||||||||||
Sbjct 967 ATAAGGATATTGATAAAGATTCTGCTATGTATTACCACAAAGCTGTTGAATTCTATGAGA 1026
Query 854 TGCTTGCGAAACAACTTGTTCATCAAGGTCATGTTCTTGATGTTTTCGCAAGTTCTGTTG 913
|||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||
Sbjct 1027 TGCTTGCGAAACAACTTGTTCATCAAGGTCATGTTCTTGATGTTTTTGCTAGTTCTGTTG 1086
Query 914 ATCAGGTAGGCATTGCTGAGCTCAAAGTTGCAGTTGAGCAGACTGGTGGATATGTCGTGC 973
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1087 ATCAGGTAGGCATTGCTGAGCTCAAAGTTGCAGTTGAGCAGACTGGTGGATTTGTCGTGC 1146
Query 974 TTGCTGAAAGTTTTGGCCACTCAGTATTTAGGGATTCTCTCAAACGCGTGTGTCAGTCAG 1033
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1147 TTGCTGAAAGTTTTGGCCACTCAGTATTTAGAGATTCTCTCAAACGCGTGTGTCAGTCAG 1206
Query 1034 GTGAAAATGATCTAGGCTTGTCCTCATG 1061
||||||||||||||||||||||||||||
Sbjct 1207 GTGAAAATGATCTAGGCTTGTCCTCATG 1234
Score = 453 bits (245), Expect = 3e-126
Identities = 338/377 (90%), Gaps = 29/377 (8%)
Strand=Plus/Plus
Query 13 TACACACCTCTGAAACCTGTTAGATCTTTCACCGATCATTCTCTTCTCCTTCCTTACTCT 72
|||||||||||||||||| ||||||| ||| ||| | ||||||||||||||||||
Sbjct 141 TACACACCTCTGAAACCTCTTAGATC--TCA---ATC---C-CTTCTCCTTCCTTACTCT 191
Query 73 CCTCTCCGTTGCCGGACTTGTCGCTCCTTTCTAAACCCTTACTCCGTCGTTGATTTCTCC 132
||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||
Sbjct 192 CCTCTCCGTTGCCGGACTTGTCGCTCCGTTCTAAACCCTTACTCCGTCGTAGATTTCTCC 251
Query 133 GCTTGTATTTGGGGTTGTCCTTTCTGCTTCAATCGGAATCCTTTCCCGCGT-AATTACTC 191
||||||| ||||||||||||||||||||||||||||||||||||||||| | ||||||||
Sbjct 252 GCTTGTAATTGGGGTTGTCCTTTCTGCTTCAATCGGAATCCTTTCCCGC-TAAATTACTC 310
Query 192 TTCAATCGCTGATAACAATCTCCCGCCGGAGCTTTTTCCTCATTCCACAACTGTTGAGTA 251
|||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 311 TTCAGTCGCCGATAACAATCTCCCGCCGGAGCTTTTTCCTCATTCCACAACTGTTGAGTA 370
Query 252 TCTTTGTGATTCCTTCTCTTCTCCTTCTCCTCCTGTTTTCCTCTTCGTCGTTGATACTTG 311
||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 371 TCTCTGTGATTCCTTCTCTTCTCCTTCTCCTCCTGTTTTCCTCTTCGTTGTTGATACTTG 430
Query 312 ------CT-TGA-----T---TT-CCTCAAATTATCTCTCTTTCAAGCT-TTGGATCTTC 354
|| ||| | || |||||||| ||||||||| |||||| ||| ||||||
Sbjct 431 TTTGATCTCTGAAGAACTCGATTTCCTCAAATCATCTCTCTTCCAAGCTCTTG-ATCTTC 489
Query 355 TTCCTGATACCTCCATC 371
|||||||||||||||||
Sbjct 490 TTCCTGATACCTCCATC 506
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 101856905805
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5