BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg481085
Length=1244
Score E
Sequences producing significant alignments: (Bits) Value
AT2G22190.1 | Symbols: TPPE | Haloacid dehalogenase-like hydrol... 1906 0.0
AT5G10100.1 | Symbols: TPPI | Haloacid dehalogenase-like hydrol... 442 4e-123
> AT2G22190.1 | Symbols: TPPE | Haloacid dehalogenase-like hydrolase
(HAD) superfamily protein | chr2:9433765-9436544 REVERSE
LENGTH=1259
Length=1259
Score = 1906 bits (1032), Expect = 0.0
Identities = 1190/1262 (94%), Gaps = 27/1262 (2%)
Strand=Plus/Plus
Query 1 ACATTCAGTCTCATTTCCATCAAAATTATAACTTCATTTCA-AGTTTTGATTAATATCCT 59
||||||| ||||||||||||||||||||||||||||||| | | ||||||||||||||||
Sbjct 1 ACATTCACTCTCATTTCCATCAAAATTATAACTTCATTTTACA-TTTTGATTAATATCCT 59
Query 60 AAAATGGTTAGATTCGTCGAAGAGAATACTACTAAAATGTTGGAGACAAAGGTCATCTCA 119
||||||||||||||| ||||||| |||| ||||||||||||||||||||||| |||||||
Sbjct 60 AAAATGGTTAGATTCATCGAAGAAAATATTACTAAAATGTTGGAGACAAAGGCCATCTCA 119
Query 120 AACTCGGAGGTTTTATATGTCGGAAGAGACGACGGAGACACGTCACCATCGACGAAAGTT 179
|||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||
Sbjct 120 AACTCGGAGGTTTTATATGTCGGAGGAGACGACGGAGACACGTCACCAACGACGAAAGTT 179
Query 180 CTTCATGATTTTCAGATCAACGGCGGAGGAGGAGGAGGACTGATAAGATCATGGGTTGAT 239
|||||||||||||||||||| | | | ||||||||||||||||||||||||||||||
Sbjct 180 CTTCATGATTTTCAGATCAA---C--A-GCGGAGGAGGACTGATAAGATCATGGGTTGAT 233
Query 240 TCCATGAGAGCTTGTTCTCCTACTCGTCCTAAATCCTTCAATAGCCAATCTTGTTGGATT 299
|| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 234 TCTATGAGAGCTTGTTCTCCTACTCGCCCTAAATCCTTCAATAGCCAATCTTGTTGGATT 293
Query 300 AAGGAACATCCATCAGCTTTGAACATGTTCGAAGAAATACTTCATAAATCTAAAGGAAAA 359
|||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 294 AAGGAACATCCATCTGCTTTGAACATGTTCGAAGAAATACTTCATAAATCTGAAGGAAAA 353
Query 360 CAAATAGTTATGTTTCTTGATTATGATGGTACTCTCTCTCCCATTGTTGATGATCCTGAT 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 354 CAAATAGTTATGTTTCTTGATTATGATGGTACTCTCTCTCCCATTGTTGATGATCCTGAT 413
Query 420 CGAGCTTTCATGTCCAAGAAGATGCGAAATACAGTAAGGAAACTTGCAAAGTGTTTTCCA 479
|||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||
Sbjct 414 CGAGCTTTCATGTCCAAGAAGATGCGAAATACTGTGAGGAAACTTGCAAAGTGTTTTCCA 473
Query 480 ACAGCCATAGTTAGTGGGAGATGCAGAGAGAAGGTTTCTAGTTTTGTGAAATTAACTGAG 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 474 ACAGCCATAGTTAGTGGGAGATGCAGAGAGAAGGTTTCTAGTTTTGTGAAATTAACTGAG 533
Query 540 CTATACTACGCTGGAAGTCATGGCATGGACATCAAAGGACCAGAGCAAGGACCTAAATAC 599
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 534 TTATACTACGCTGGAAGTCATGGCATGGACATCAAAGGACCAGAGCAAGGATCTAAATAC 593
Query 600 AAGAAAGAAAATCAGTCTCTTCTTTGTCAACCCGCGACTGAGTTCCTCCCAGTGATCAAC 659
||||||||||||||||||||||||||||||||||| ||||| |||||||| ||||| |||
Sbjct 594 AAGAAAGAAAATCAGTCTCTTCTTTGTCAACCCGCAACTGAATTCCTCCCGGTGATAAAC 653
Query 660 GAGGTTTATAAAAAACTACTCGAGAAAAC-CAAATCGATTCCAGGAGCCAAAGTTGAGAA 718
|||||||||||||||||| ||||||| || ||| |||||||||||||| |||||||||||
Sbjct 654 GAGGTTTATAAAAAACTAGTCGAGAACACTCAA-TCGATTCCAGGAGCGAAAGTTGAGAA 712
Query 719 CAACAAATTTTGTGCGTCTGTTCACTTTCGATGCGTAGAAGAAAATAAATGGAGTGACTT 778
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 713 CAACAAATTTTGTGCGTCTGTTCACTTTCGATGCGTAGAAGAAAATAAATGGAGTGACTT 772
Query 779 GACCAATCAAGTTCGATCAGTCTTGAAGAACTACCCCAAGCTCATGCTTACCCAAGGAAG 838
| || ||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 773 GGCCCATCAAGTTCGATCAGTCTTGAAGAATTACCCCAAGCTCATGCTTACCCAAGGAAG 832
Query 839 AAAAGTGTTGGAGATTCGTCCAATCATTAAGTGGGATAAAGGCAAAGCACTCGAGTTTTT 898
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 833 AAAAGTATTGGAGATTCGTCCAATCATTAAGTGGGATAAAGGCAAAGCACTCGAGTTTTT 892
Query 899 GTTAGAATCACTCGGATATAATAATTGTACTGATGTTTTTCCTATATATATTGGAGATGA 958
|||||||||||| |||||| |||||||||| |||||||||||||||||||||||||||||
Sbjct 893 GTTAGAATCACTAGGATATGATAATTGTACCGATGTTTTTCCTATATATATTGGAGATGA 952
Query 959 TCGTACCGACGAAGATGCCTTTAAGATATTGAGAGATAAAAAACAAGGTCTTGGAATTCT 1018
||||||||||||||| |||||||||||| ||||||| |||||||||||||||||||||||
Sbjct 953 TCGTACCGACGAAGACGCCTTTAAGATACTGAGAGACAAAAAACAAGGTCTTGGAATTCT 1012
Query 1019 TGTGTCCAAATACGCAAAGGAGACTAATGCTTCTTATTCTTTGCAAGAGCCAGATGAGGT 1078
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1013 TGTGTCCAAATACGCAAAGGAGACTAATGCTTCTTATTCTTTGCAAGAGCCAGATGAGGT 1072
Query 1079 TATGGATTTTTTAGAACGTTTGGTGGACTGGAAACAATTAAGATGTGGGGCATGAAGAGT 1138
||||| ||||||||||||||||||||| |||||||| | ||| |||||||||||||||||
Sbjct 1073 TATGGTTTTTTTAGAACGTTTGGTGGAATGGAAACAGTCAAGGTGTGGGGCATGAAGAGT 1132
Query 1139 TTACAAGTACAGGAGAA--T----Ctttttattttt-cttttt--tattt-GT-T----A 1183
||||||||||||||||| | |||||| ||||| |||||| ||| | || | |
Sbjct 1133 TTACAAGTACAGGAGAAACTTGTTCTTTTTCTTTTTTCTTTTTACTATGTAGTATTGGTA 1192
Query 1184 A-GATTCTAACGTATAAGAGAACGAGAATTATTTTGTTAAATATAACAAAAAGACAAATA 1242
| ||||||||||||||||||||||||||| | ||| |||| |||||||| ||||||||||
Sbjct 1193 AAGATTCTAACGTATAAGAGAACGAGAATAAGTTTATTAA-TATAACAAGAAGACAAATA 1251
Query 1243 TT 1244
||
Sbjct 1252 TT 1253
> AT5G10100.1 | Symbols: TPPI | Haloacid dehalogenase-like hydrolase
(HAD) superfamily protein | chr5:3157980-3160445 FORWARD
LENGTH=1280
Length=1280
Score = 442 bits (239), Expect = 4e-123
Identities = 611/786 (78%), Gaps = 43/786 (5%)
Strand=Plus/Plus
Query 353 AGGAAAACAAATAGTTATGTTTCTTGATTATGATGGTACTCTCTCTCCCATTGTTGATGA 412
||| |||||||| || ||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 327 AGGGAAACAAATCGTAATGTTTCTTGATTATGACGGTACTCTCTCTCCCATTGTTGATGA 386
Query 413 TCCTGATCGA-GCTTTCATGTCCAAG-AAGATGCGAA-ATACAGT-AAGGAAACTTGCAA 468
||| || | | ||||||||||| ||| |||||| ||| | ||||| || ||||| || |
Sbjct 387 TCCAGA-CAAAGCTTTCATGTC-AAGCAAGATGAGAAGA-ACAGTGAAA-AAACTGGCTA 442
Query 469 AGTGTTTTCCAACAGCCATAGTTAGTGGGAGATGCAGAGAGAAGGTTTCTAGTTTTGTGA 528
||||||| || || || ||||||| ||| ||||||| ||| ||||| | || |||||||
Sbjct 443 AGTGTTTCCCCACTGCTATAGTTACTGGTAGATGCATAGACAAGGTGTATAACTTTGTGA 502
Query 529 AA-TTAACTGAGCTATACTACGCTGGAAGTCATGGCATGGACATCAAAGGACCAG-AGCA 586
| || ||||||| || || |||||||| |||||||||||||| ||||| |||| | |
Sbjct 503 AGCTTG-CTGAGCTGTATTATGCTGGAAGCCATGGCATGGACATTAAAGGTCCAGCAA-A 560
Query 587 AGGAC--CTA-A-ATACAAGAAAGA-AAATCAGTCTCTTCTTTGTCAACCCGCGACTGAG 641
||| | || | | |||||| | ||| ||||||||||| | ||||| || | |||
Sbjct 561 AGG-CTTCTCCAGACACAAGAGGGTTAAA-CAGTCTCTTCTGTACCAACCAGCTAATGAC 618
Query 642 T-TCCTCCCAGTGATCAACGAGGTTTATAAAAAACTACTCG-AGAAAACCAAATCGATTC 699
| || ||||| ||||| | || ||||||| | |||| || | | ||||| ||||||| ||
Sbjct 619 TATCTTCCCA-TGATCGATGAAGTTTATAGACAACT-CTTGGAAAAAACAAAATCGACTC 676
Query 700 CAGGAGCCAAAGTTGAGAACAACAAATTTTGTGCGTCTGTTCACTTTCGATGCGTAGAAG 759
||||||||||||| || ||| |||| |||||||| ||||| |||||||| ||||| || |
Sbjct 677 CAGGAGCCAAAGTAGAAAACCACAAGTTTTGTGCTTCTGTGCACTTTCGCTGCGTCGATG 736
Query 760 AAAATAAATGGAGTGA-CTTGACCAATCAAGTTCGATCAGTCTTGAAGAACTACCCCAAG 818
| || |||||||| || || | | | || ||||| || || || ||||| | ||| | |
Sbjct 737 AGAAGAAATGGAGCGAACTGGTTCTA-CAGGTTCGGTCGGTATTAAAGAAATTCCCTACG 795
Query 819 CT-CATGCTTACCCAAGGAAGAAAAGTGTTGGAGATTCGTCCAATCATT-AAGTGGGATA 876
|| || || |||||||| | || || || || || |||||||| ||| || |||||||
Sbjct 796 CTGCAA-CTGACCCAAGGTCGGAAGGTTTTCGAAATCCGTCCAATGATTGAA-TGGGATA 853
Query 877 AAGGCAAAG-CACTCGAGTTTTTGTTAGAATCACTCGGATATAATAATTGTA-CTGATGT 934
|||| |||| | || ||||| |||||||||||||| |||| | || || | ||||
Sbjct 854 AAGG-AAAGGCTCTTGAGTTCTTGTTAGAATCACTTGGATTTGGGAACACTAACA-ATGT 911
Query 935 TTTTCCTATATATATTGGAGATGATCGTACCGACGAAGATGCCTTTAAGATATTGA-GAG 993
||| || | |||||||| || ||||| || ||||||||||| |||||||| | | |||
Sbjct 912 TTTCCCGGTTTATATTGGTGACGATCGAACTGACGAAGATGCATTTAAGATGCT-ACGAG 970
Query 994 ATAAAAAAC-AAGGTCTT-GGAATTCTTGTGTCCAAATA-CGCAAAGGAGACTAATGCTT 1050
| | | | |||| ||| || |||||||| ||||| | | ||| ||| ||| ||||||
Sbjct 971 ACAGAGG-CGAAGG-CTTTGGCATTCTTGTCTCCAAGTTTCCCAA-GGATACTGATGCTT 1027
Query 1051 CTTATTCTTTGCAAGAGCCAGATGAGGTTATGGATTTTTTA-GAACGTTTGGTGGACTGG 1109
| |||||||||||||| ||| ||||| |||||||| ||| || || |||||||| |||
Sbjct 1028 CGTATTCTTTGCAAGATCCATCCGAGGTGATGGATTTCTTACGA-CGATTGGTGGAATGG 1086
Query 1110 AAACAA 1115
||||||
Sbjct 1087 AAACAA 1092
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 61144263810
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5