BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg481086
Length=884
Score E
Sequences producing significant alignments: (Bits) Value
AT2G22230.1 | Symbols: | Thioesterase superfamily protein | ch... 1216 0.0
> AT2G22230.1 | Symbols: | Thioesterase superfamily protein |
chr2:9449984-9451622 FORWARD LENGTH=916
Length=916
Score = 1216 bits (658), Expect = 0.0
Identities = 772/825 (94%), Gaps = 16/825 (2%)
Strand=Plus/Plus
Query 21 CTCGACAATGGCTACTACTTCCAACTCGGTACTCTTCCTAAGTTCTGACTCACTGAGtca 80
||||||||||||||||||||| ||||||||||| |||||||||||||||||||| | |
Sbjct 52 CTCGACAATGGCTACTACTTCTAACTCGGTACTTTTCCTAAGTTCTGACTCACT--G--A 107
Query 81 tcatcatcatcatcatcatcaGCAGCAGCCTCTGCATCTCTCTTCCTCCAGATCTCACTC 140
| |||||||||||||||| || | ||||| ||||| ||||||||||||||||||||
Sbjct 108 T--TCATCATCATCATCAT---CA--A-CCTCTCCATCTATCTTCCTCCAGATCTCACTC 159
Query 141 TGTTTCTCTCCCACCCAACAAGCGATCCAATTCTCTCACGCTTCGTTGTTCTACAAATGG 200
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 160 TGTTTCTCTCCCACCCAACAAGCGATCCAATTCTCTCACGCTTCGTTGTTCAACAAATGG 219
Query 201 CGATAACACCTCATCGGAAAAGGAAACACCAATCGAACTCAAATTCCCTGCATTTCCAAC 260
||||| ||||||| | |||||||||||||||||||||||||||||||| |||||||||||
Sbjct 220 CGATAGCACCTCAACCGAAAAGGAAACACCAATCGAACTCAAATTCCCAGCATTTCCAAC 279
Query 261 GGTAATGGACATTAACCAAATCAGAGAGATATTGCCTCACAGGTTTCCGTTTCTGCTGGT 320
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 280 GGTAATGGACATTAACCAAATCAGAGAGATATTGCCTCACAGGTTTCCGTTTCTGCTGGT 339
Query 321 AGATAGAGTGATAGAGTATACGCCAGGTGTTTCAGCTGTAGCTATTAAGAATGTCACAAT 380
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||
Sbjct 340 AGATAGAGTGATAGAGTATACGCCTGGTGTTTCAGCTGTAGCTATTAAGAATGTCACCAT 399
Query 381 CAATGACAATTTCTTCCCTGGTCATTTCCCTGAACGACCCATCATGCCTGGTGTTCTCAT 440
||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||
Sbjct 400 CAATGACAATTTCTTCCCTGGCCATTTCCCTGAACGACCAATCATGCCTGGTGTTCTCAT 459
Query 441 GATTGAGGCAATGGCGCAAGTGGGAGGTATAGTAATGCTGCAGCCGGAAGTAGGAGGCTC 500
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 460 GATTGAGGCAATGGCGCAAGTCGGAGGTATAGTAATGCTGCAGCCGGAAGTAGGAGGCTC 519
Query 501 TCAAGATAACTTCTTCTTTGCAGGTATTGACAAAGTGAGATTCCGCAAACCAGTGATTGC 560
||||||||||||||||||||| |||||||| ||||||||||| |||||||||||||||||
Sbjct 520 TCAAGATAACTTCTTCTTTGCTGGTATTGATAAAGTGAGATTTCGCAAACCAGTGATTGC 579
Query 561 AGGAGACACGCTGGTCATGAGAATGACTCTTCTCAAGTTCCAGAAACGGTTCGGGCTTGC 620
|||||||||||| |||||||| ||||||||||||||||||||||| ||||||||||| ||
Sbjct 580 AGGAGACACGCTAGTCATGAGGATGACTCTTCTCAAGTTCCAGAAGCGGTTCGGGCTCGC 639
Query 621 TAAGATGGAAGGTAAAGCTTATGTTGGTGGCGCTTTGGTATGCGAAGGCGAGTTCATGAT 680
||| |||||||||||||||||||| ||||| ||| |||| || |||||||||||||||||
Sbjct 640 TAAAATGGAAGGTAAAGCTTATGTGGGTGGTGCTCTGGTGTGTGAAGGCGAGTTCATGAT 699
Query 681 GGTTTCTGCTGGTAGTTCTTGATCTCACCCATTAATGGTCTCACTTGCCACATGTTGATT 740
|||||||||||||||||||||||||||||||||||||||||||||| |||||||| || |
Sbjct 700 GGTTTCTGCTGGTAGTTCTTGATCTCACCCATTAATGGTCTCACTTCCCACATGTGGACT 759
Query 741 CTCCTAATGCTTTTTCTGTTATTCTAAAAACTAGACAAGACCAAGCTTTATGTTTTCCAC 800
|| || |||||| ||||||||||| |||| ||||||||||| | ||||||||||||| ||
Sbjct 760 CTTCTTATGCTTCTTCTGTTATTCGAAAATCTAGACAAGAC-A-GCTTTATGTTTTCGAC 817
Query 801 ATTTATATGAGCTTCTTTTGCCCTTTC-TGTCTTTATTGCTGTCT 844
||||||||||||| ||||||||||| | |||||||||||||||||
Sbjct 818 ATTTATATGAGCTACTTTTGCCCTT-CGTGTCTTTATTGCTGTCT 861
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43151132273
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5