BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg481091
Length=1114
Score E
Sequences producing significant alignments: (Bits) Value
AT2G22270.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 1411 0.0
AT2G22260.1 | Symbols: | oxidoreductase, 2OG-Fe(II) oxygenase ... 132 9e-30
> AT2G22270.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT4G39860.2);
Has 247 Blast hits to 231 proteins in 42 species: Archae -
0; Bacteria - 17; Metazoa - 14; Fungi - 5; Plants - 145; Viruses
- 0; Other Eukaryotes - 66 (source: NCBI BLink). | chr2:9463694-9465467
FORWARD LENGTH=1243
Length=1243
Score = 1411 bits (764), Expect = 0.0
Identities = 908/976 (93%), Gaps = 15/976 (2%)
Strand=Plus/Plus
Query 74 ATCCGCATCATTCCACCGCCGATCTTCTTTCTTGGTCTGAGATCCGTCGTCCTGACTATT 133
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 91 ATCCGCATCATTCCACCGCCGATCTTCTTTCTTGGTCTGAGATCCGCCGTCCTGACTATT 150
Query 134 CCACCGCCGCTAATCGCTCTAACCAGCCGTCTGATGGAATGAGCGAGGTGCTTGGCGGCG 193
|||||||||||||||||||||||||||||||||||||||||| ||| || ||||||||||
Sbjct 151 CCACCGCCGCTAATCGCTCTAACCAGCCGTCTGATGGAATGAACGATGTACTTGGCGGCG 210
Query 194 GCGGTCAGATCACTAACGCGGAATCCGAATCGCTTAATAAGAATGTTTCTTATAGGAAGA 253
||||||||||||||||||||||| | |||| ||||||| ||||||||| |||||||||
Sbjct 211 GCGGTCAGATCACTAACGCGGAAACTAAATCACTTAATACGAATGTTTCGCATAGGAAGA 270
Query 254 ATTGTTCTGGGCATAAGCTAAAAGAAATGACTGGTAGTGACATATTCTCTGATAATGGTA 313
| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 271 ACTGTTCTGGGCATAAGCTAAAAGAAATGACTGGTAGTGACATATTCTCTGATGATGGTA 330
Query 314 AAGATGATCCAAATCACCAGACAAGAATCCATTACCATCAGGATCAGCTAAGCCAGATAT 373
|| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 331 AATATGATCCAAATCACCAGACAAGAATCCATTACCATCAGGATCAGCTGAGCCAGATAT 390
Query 374 CATTCAGCGGCGAAGAGAATGCCATGA-AACCAAACGAT-AATGGTAAAGATGATCCAAA 431
||||||||||||||||||||| || | || | | || ||||| ||||||||||||||
Sbjct 391 CATTCAGCGGCGAAGAGAATG-CA--ACAA-C-TCCCATGAATGGCAAAGATGATCCAAA 445
Query 432 TCACCAGACAAGAATCCATTACCATCAAGATCAGCGAAGCCAGATATCTTTCAGCGGCGA 491
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||
Sbjct 446 TCACCAGACAAGAATCCATTACCATCAAGATCAGAGAAGCCAGATATCTTTCAGCGGTGA 505
Query 492 AGAGAATGTGACTCCGAAGAAACCAACCACTTCAAACGAGGCGGCAAAGCAAAAGGAGTT 551
||||||||||||||| |||||||||||||||| ||||||||| || ||||||||||||||
Sbjct 506 AGAGAATGTGACTCCAAAGAAACCAACCACTTTAAACGAGGCTGCTAAGCAAAAGGAGTT 565
Query 552 GAGCAGGACTATAGAAACCCAAGCAGATTTAAAGAGTAAGAAGAAACAGGCATTGAACAC 611
|||||||||| |||||||||||||||||| ||| |||||||||||||| || ||||||
Sbjct 566 GAGCAGGACTGTAGAAACCCAAGCAGATTCGAAGTGTAAGAAGAAACAGATATCGAACAC 625
Query 612 CAAGACCAAAGCAATGAGTGGTCATGACATCTTCGCATCTCCTGAAAGCCAACCTCGCCG 671
||||| |||||||||||||| ||||||||||| ||||||||||||||||||||||||||
Sbjct 626 CAAGAATAAAGCAATGAGTGGGCATGACATCTTTGCATCTCCTGAAAGCCAACCTCGCCG 685
Query 672 CTTG-TT--CGGTGCAACACAA-CAAGAAGTTGAAGGAAATAAGAACACGGGGGAATCTG 727
|||| || |||||||||||| | ||||||| |||||||||||||||||| ||||||||
Sbjct 686 CTTGTTTGGTGGTGCAACACAATC-AGAAGTTAAAGGAAATAAGAACACGGAGGAATCTG 744
Query 728 CACCGAGAAGCTCGCGTGCATCTGTTAAAGCCTTTAACGGGCAAAGCAGCAGCAACAGAC 787
||||||| ||||||||||||||||| ||| ||| ||||||| || ||||||||||||
Sbjct 745 CACCGAGGAGCTCGCGTGCATCTGTCAAAACCTCAAACGGGC-AA--AGCAGCAACAGAT 801
Query 788 TGTTTAGTGAAGAACATGTTGTGAAGTCATCAAAGAAGATACATAACCAGAAGTCTCAGT 847
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 802 TGTTTAGTGAAGAACATGTTGTGAAGTCATCAAAGAAGATACATAACCAGAAGTCTCAGT 861
Query 848 CTCAGGGACTCACAAGCAATGGTATCTTCAAATCTGATAAAATCCCTCCTGGCTATTCTG 907
|||||| |||||||||||||||||||||||||||||||||||||||||||| ||||| |
Sbjct 862 TTCAGGGGCTCACAAGCAATGGTATCTTCAAATCTGATAAAATCCCTCCTGGTTATTCAG 921
Query 908 AGAAGATGCAAAGCTCAGCTAAAAAGCGGGAAATGAGCGGACACAATATATTTGCAGACG 967
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 922 AGAAGATGCAAAGCTCAGCCAAAAAGCGGGAAATGAGCGGACACAATATATTTGCAGACG 981
Query 968 GGAAATCGGAATATCGGGATTACTATGGTGGTGCGAGGAGACCTCCTGGTGGTGAGAGCA 1027
|||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 982 GGAAGTCGGAATATCGGGATTACTATGGTGGTGCGAGGAGACCTCCTGGTGGCGAGAGCA 1041
Query 1028 GCATTTCGTTGGTCTA 1043
||||||| ||||||||
Sbjct 1042 GCATTTCATTGGTCTA 1057
Score = 135 bits (73), Expect = 7e-31
Identities = 86/92 (93%), Gaps = 2/92 (2%)
Strand=Plus/Plus
Query 409 GATAATGGTAAAGATGATCCAAATCACCAGACAAGAATCCATTACCATCAAGATCAGC-G 467
||| |||||||| ||||||||||||||||||||||||||||||||||||| ||||||| |
Sbjct 321 GATGATGGTAAATATGATCCAAATCACCAGACAAGAATCCATTACCATCAGGATCAGCTG 380
Query 468 AAGCCAGATATCTTTCAGCGGCGAAGAGAATG 499
| |||||||||| |||||||||||||||||||
Sbjct 381 A-GCCAGATATCATTCAGCGGCGAAGAGAATG 411
Score = 130 bits (70), Expect = 3e-29
Identities = 82/88 (93%), Gaps = 0/88 (0%)
Strand=Plus/Plus
Query 307 AATGGTAAAGATGATCCAAATCACCAGACAAGAATCCATTACCATCAGGATCAGCTAAGC 366
||||| ||||||||||||||||||||||||||||||||||||||||| |||||| ||||
Sbjct 426 AATGGCAAAGATGATCCAAATCACCAGACAAGAATCCATTACCATCAAGATCAGAGAAGC 485
Query 367 CAGATATCATTCAGCGGCGAAGAGAATG 394
|||||||| |||||||| ||||||||||
Sbjct 486 CAGATATCTTTCAGCGGTGAAGAGAATG 513
> AT2G22260.1 | Symbols: | oxidoreductase, 2OG-Fe(II) oxygenase
family protein | chr2:9461125-9463192 FORWARD LENGTH=1146
Length=1146
Score = 132 bits (71), Expect = 9e-30
Identities = 100/114 (88%), Gaps = 2/114 (2%)
Strand=Plus/Plus
Query 249 GAAGAATTGTTCTGGGCATAAGCTAAAAGAAATGACTGGTAGTGACATATTCTCTGATAA 308
|||||| ||||| ||||| |||||||||||| | |||| |||||||| ||||||||| ||
Sbjct 173 GAAGAACTGTTCAGGGCACAAGCTAAAAGAAGTAACTGATAGTGACACATTCTCTGACAA 232
Query 309 TGGTAAAGATGATCCAAATCACCA-GACAAGAATCCATTACCATCAGGATCAGC 361
||||||||||||| || || |||| || |||| |||||||||||||||||||||
Sbjct 233 TGGTAAAGATGATTCAGAT-ACCAAGAAAAGATTCCATTACCATCAGGATCAGC 285
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54618192960
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5