BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg481095

Length=1017
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G22310.2 | Symbols: UBP4 | ubiquitin-specific protease 4 | c...   361    9e-99
  AT2G22300.1 | Symbols: CAMTA3, SR1 | signal responsive 1 | chr2...  75.0    1e-12


> AT2G22310.2 | Symbols: UBP4 | ubiquitin-specific protease 4 | 
chr2:9476637-9478881 REVERSE LENGTH=1292
Length=1292

 Score =  361 bits (195),  Expect = 9e-99
 Identities = 217/228 (95%), Gaps = 0/228 (0%)
 Strand=Plus/Plus

Query  535  GACAAATTTTGCTGTGATAAATGCTGCAGTTTACAAGAAGCGCAGAAGAGAATGAAGATC  594
            ||||| |||| |||||| ||||||||||||||||||||||||||||||||||||||||| 
Sbjct  768  GACAAGTTTTTCTGTGACAAATGCTGCAGTTTACAAGAAGCGCAGAAGAGAATGAAGATT  827

Query  595  AAGAAACCGCCACACATCTTAGTTATACATCTGAAACGGTTTAAATATATCCAACAGTTG  654
            ||||||||||||||||||||||||||||||||||||||||| ||||| ||  ||||||||
Sbjct  828  AAGAAACCGCCACACATCTTAGTTATACATCTGAAACGGTTCAAATACATGGAACAGTTG  887

Query  655  GGCCGCTACAAGAAGTTATCTTACAGAGTCGTCTTCCCTCTGGAACTGAAACTCAGCAAC  714
            ||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||
Sbjct  888  GGCCGCTACAAGAAGCTATCGTACAGAGTCGTCTTCCCTCTGGAACTGAAACTCAGCAAC  947

Query  715  ACAGTGGATGAATATGTGGACATTGAGTACTCTCTCTTCGCAGTCGTG  762
            |||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct  948  ACAGTGGATGAATATGTGGACATTGAGTACTCTCTCTTTGCAGTCGTG  995


 Score =  279 bits (151),  Expect = 3e-74
 Identities = 195/214 (91%), Gaps = 12/214 (6%)
 Strand=Plus/Plus

Query  765   TGTCGAAATGATTGAAGAATCTGCTGTCCAAACATTCTTCGGTTCATCGCAAGAGTACTC  824
             ||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct  1082  TGTCGAAATAATTGAAGAATCTGCTGTTCAAACATTCTTCGGTTCATCGCAAGAGTACTC  1141

Query  825   AAGCAATACTGATCATGGCTACATCTTGTTATACGAGAGCCTCGGAACAAGATAGAGAAA  884
             ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1142  AAGTAATACTGATCATGGCTACATCTTGTTATACGAGAGCCTCGGAACAAGATAGAGAAA  1201

Query  885   AGGGCTTTTAGTCATTTGACAAGAACATAACCTCTCTCCTCTCTT--TGTATACTT--AA  940
             |  ||||||||||||||||||||||||||||||||| | ||||||  | | | |||  ||
Sbjct  1202  AAAGCTTTTAGTCATTTGACAAGAACATAACCTCTC-C-TCTCTTACTCTCT-CTTCGAA  1258

Query  941   TGAA-ATCAACCATGTACAGTTTTAACT-ACAAG  972
              ||| || |||||||||||||||||| | |||||
Sbjct  1259  -GAACAT-AACCATGTACAGTTTTAA-TGACAAG  1289


 Score =  196 bits (106),  Expect = 3e-49
 Identities = 209/256 (82%), Gaps = 17/256 (7%)
 Strand=Plus/Plus

Query  1    AAAGCTCTGGGCGACCAGTTCCCGGAAGGAGAACGATACTTGGGTTTCGAAAATTTCGGC  60
            |||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct  84   AAAGCTCTCGGCGACCAGTTCCCGGAAGGAGAACGATACTTCGGTTTCGAAAATTTCGGC  143

Query  61   AACACTTGTTACTGTAACAGTGTTTTGCAGAGACTTC-TTCTAG-TCCTAGAGGGGCTAA  118
            |||||||||||||||||||||||||||||| ||||   || | | || ||| |    |  
Sbjct  144  AACACTTGTTACTGTAACAGTGTTTTGCAG-GACTGGGTTGTTGATCTTAG-G----T--  195

Query  119  CCTGTACAGAAGAACCATGT--GCATCATCAGTTTTTAAGATATGGATTCGTGAACTATT  176
            | |||   | |   | ||||  || || | | |||||  | |     ||||||||| |||
Sbjct  196  C-TGTTTTGCATT-CTATGTTTGC-TCTTTA-TTTTTGTGCTCCCT-TTCGTGAACAATT  250

Query  177  GCTTCAACATTATGCAAATGATCAAGCTGATGCTCAGGAGAATCTCTTGACCTGCTTGGC  236
            |||| |||||||||||||| || ||||||||||| |||||||||||||||||||||||||
Sbjct  251  GCTTGAACATTATGCAAATAATAAAGCTGATGCTGAGGAGAATCTCTTGACCTGCTTGGC  310

Query  237  AGACTTGTTTTCGCAG  252
             ||||| |||||||||
Sbjct  311  TGACTTATTTTCGCAG  326


 Score = 84.2 bits (45),  Expect = 2e-15
 Identities = 55/59 (93%), Gaps = 4/59 (7%)
 Strand=Plus/Plus

Query  421  GCAAATGGTGTTCATAAATTAAGAGCCAATTGTTACTTGGGTGCACAAGATTTTTCAGG  479
            |||||||||||||||  |  |||||||||||||||||||||||||||||||||||||||
Sbjct  561  GCAAATGGTGTTCAT--A--AAGAGCCAATTGTTACTTGGGTGCACAAGATTTTTCAGG  615


 Score = 75.0 bits (40),  Expect = 1e-12
 Identities = 44/46 (96%), Gaps = 0/46 (0%)
 Strand=Plus/Plus

Query  350  ATAAGTTCCCAGAAGAAGAAAACAGGAGTTATTGCTCCCAAGCGCT  395
            |||||||||||||||||||||||||||||||| ||||| |||||||
Sbjct  327  ATAAGTTCCCAGAAGAAGAAAACAGGAGTTATCGCTCCGAAGCGCT  372


> AT2G22300.1 | Symbols: CAMTA3, SR1 | signal responsive 1 | chr2:9471388-9476646 
FORWARD LENGTH=3484
Length=3484

 Score = 75.0 bits (40),  Expect = 1e-12
 Identities = 47/50 (94%), Gaps = 1/50 (2%)
 Strand=Plus/Minus

Query  968   ACAAGGTTACTATTTTGGTTATATAAGTTTGATTTATGTTTCAAATATAT  1017
             ||||| |||||| |||||||| ||||||||||||||||||||||||||||
Sbjct  3482  ACAAGATTACTA-TTTGGTTACATAAGTTTGATTTATGTTTCAAATATAT  3434



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 49832273824


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5