BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg481098
Length=322
Score E
Sequences producing significant alignments: (Bits) Value
AT2G14365.1 | Symbols: LCR84 | low-molecular-weight cysteine-ri... 357 4e-98
> AT2G14365.1 | Symbols: LCR84 | low-molecular-weight cysteine-rich
84 | chr2:6088339-6088813 FORWARD LENGTH=336
Length=336
Score = 357 bits (193), Expect = 4e-98
Identities = 284/326 (87%), Gaps = 14/326 (4%)
Strand=Plus/Plus
Query 1 AGAAGTATTAACAATAAGAAAGAAAATAATGACTATGACAAAAGCTTTTGTGATTTTTAT 60
|||| ||||||| ||||| |||||||||||| |||||||| ||| |||||||||||||||
Sbjct 3 AGAATTATTAACCATAAGGAAGAAAATAATGGCTATGACACAAGTTTTTGTGATTTTTAT 62
Query 61 TCTTGTAGCAACGTCGTTGTGCAACTCCAATGCTTTGCCTTCATCGGTTGTCAATGGATT 120
|||| ||||||||||||||||||||||||||||||||||||||||||| |||| |||||
Sbjct 63 TCTTCTAGCAACGTCGTTGTGCAACTCCAATGCTTTGCCTTCATCGGTAATCAACGGATT 122
Query 121 TGGATATGATTATTGCATTGCAAAATGTTCAATAACTTTTTTAGATGATGTATGCAAGCC 180
|||||||||||||||||||| | ||||||||||||||||||||||||||| |||||||||
Sbjct 123 TGGATATGATTATTGCATTGTAGAATGTTCAATAACTTTTTTAGATGATGCATGCAAGCC 182
Query 181 GGTGTGTATA-AGCAAGGGGTACTCAGATGGAGGGTGTATTGG---AGGACCAAAACTTA 236
|||||||| | || ||||||||| |||||||| |||||||| | |||| | |||
Sbjct 183 ATTGTGTATAGA-CAGGGGGTACTCGGATGGAGGATGTATTGGTTTATCACCACATTTTA 241
Query 237 AATGTTGTTGTAAGAAATGATAGAAATCAATAATCTTTATAGTAAACTAGCGATTTGATA 296
|||||||||||||||||||||| ||||||||| ||||||| |||||||||||
Sbjct 242 AATGTTGTTGTAAGAAATGATATAAATCAATA---------GTAAACTGGCGATTTGATA 292
Query 297 TCTTGTTTGTTCTTGGATGAAATAAA 322
||| ||||||| || |||||||||||
Sbjct 293 TCTGGTTTGTTTTTTGATGAAATAAA 318
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 14979789202
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5