BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg481104

Length=352
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G22425.1 | Symbols:  | Microsomal signal peptidase 12 kDa su...   529    8e-150


> AT2G22425.1 | Symbols:  | Microsomal signal peptidase 12 kDa 
subunit (SPC12) | chr2:9514936-9515535 FORWARD LENGTH=516
Length=516

 Score =  529 bits (286),  Expect = 8e-150
 Identities = 335/357 (94%), Gaps = 9/357 (3%)
 Strand=Plus/Plus

Query  1    ATTGTTGAAAATCAGGTTTTTGA-AGATTCAGTGAGAGATCAGATCGCT-AA-AAG-AAA  56
            ||||||||||||||||  ||| | ||||||||||||||||||||||||| || ||| |||
Sbjct  4    ATTGTTGAAAATCAGG--TTT-ACAGATTCAGTGAGAGATCAGATCGCTAAAGAAGAAAA  60

Query  57   TGGATTGGCAAGGACAGAAACTGGTGGAGCAGCTGATGCAGATCTTACTTGTGATCTCCG  116
            ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct  61   TGGATTGGCAAGGACAGAAACTGGTGGAGCAGCTGATGCAGATCTTACTGGTGATCTCCG  120

Query  117  GCGTCGTCGCGGTGGTTGTTGGCTACACAACGGAATCGTTCAGGACGATGATGCTGATCT  176
            |||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  121  GCGTTGTAGCGGTGGTTGTTGGCTACACAACGGAATCGTTCAGGACGATGATGCTGATCT  180

Query  177  ACGCCGGTGGTGTTGTTCTCACGACTTTGGTTACTGTACCTAATTGGCCTTTCTACAATC  236
            | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  181  ATGCCGGTGGTGTTGTTCTCACGACTTTGGTTACTGTACCTAATTGGCCTTTCTACAATC  240

Query  237  TTCATCCTCTCAAATGGTTAGATCCGAGTGAGGCCGACAAGTATCCTAAACCAGAAGTTG  296
            |||||||||||||||||||||||||||| || ||||| ||| |||| |||||||||||||
Sbjct  241  TTCATCCTCTCAAATGGTTAGATCCGAGCGAAGCCGAGAAGCATCCCAAACCAGAAGTTG  300

Query  297  TT-GCTGTTGCTTCGAAGAAGAAATTCTCTAAGAAATAGGTCTGAATCTCTATCTCT  352
            |  | |||||||||||||||||||||||||||||||||||||||| |||  ||||||
Sbjct  301  TCAG-TGTTGCTTCGAAGAAGAAATTCTCTAAGAAATAGGTCTGATTCTGAATCTCT  356



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 16487821672


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5