BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg481105
Length=1437
Score E
Sequences producing significant alignments: (Bits) Value
AT2G22430.1 | Symbols: ATHB6, HB6 | homeobox protein 6 | chr2:9... 1820 0.0
AT4G40060.1 | Symbols: ATHB16, ATHB-16, HB16 | homeobox protein... 326 5e-88
> AT2G22430.1 | Symbols: ATHB6, HB6 | homeobox protein 6 | chr2:9526095-9527830
REVERSE LENGTH=1529
Length=1529
Score = 1820 bits (985), Expect = 0.0
Identities = 1221/1326 (92%), Gaps = 51/1326 (4%)
Strand=Plus/Plus
Query 147 AGTAATTAAAGATTGTTGATAATGAAGAGATTAAGTAGTTCAGATTCAGTGGGTGGTCTC 206
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 201 AGTAATTAAAGATTGTTGATGATGAAGAGATTAAGTAGTTCAGATTCAGTGGGTGGTCTC 260
Query 207 AGCTCTTTATGTCCTACAACTTCCACAGATGAGCAGAGTCCGAGAAGATACGGTGGGAGA 266
| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 261 ATCTCTTTATGTCCTACAACTTCCACAGATGAGCAGAGTCCGAGGAGATACGGTGGGAGA 320
Query 267 GAGTTTCAGTCGATGCTTGAAGGTTACGAGGAAGAAGAAGAAGCTATAGTTGAAGAAAGA 326
||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||
Sbjct 321 GAGTTTCAGTCGATGCTTGAAGGATACGAGGAAGAAGAAGAAGCTATAGTAGAAGAAAGA 380
Query 327 GGACACGTGGGTTTGTCGGAGAAGAAGAGAAGGTTAAGCATTAACCAAGTTAAAGCTTTG 386
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 381 GGACACGTGGGCTTGTCGGAGAAGAAGAGAAGGTTAAGCATTAACCAAGTTAAAGCTTTG 440
Query 387 GAGAAGAATTTTGAGTTAGAGAATAAGCTTGAGCCTGAGAGGAAAGTTAAGTTAGCTCAA 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 441 GAGAAGAATTTTGAGTTAGAGAATAAGCTTGAGCCTGAGAGGAAAGTTAAGTTAGCTCAA 500
Query 447 GAACTTGGTCTTCAGCCTCGTCAAGTAGCTGTTTGGTTTCAGAACCGTCGTGCACGGTGG 506
|||||||||||||| ||||||||||| |||||||||||||| ||||||||||| ||||||
Sbjct 501 GAACTTGGTCTTCAACCTCGTCAAGTTGCTGTTTGGTTTCAAAACCGTCGTGCTCGGTGG 560
Query 507 AAGACAAAACAGCTTGAGAAAGATTACGGTGTTCTTAAAACCCAGTATGATTCTCTCCGT 566
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 561 AAGACAAAACAGCTTGAGAAAGATTACGGTGTTCTTAAAACCCAGTACGATTCTCTCCGT 620
Query 567 CACAACTTTGATTCCCTCCGCCGTGACAATGAATCTCTCCTTCAAGAGATTAGTAAACTG 626
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 621 CATAACTTTGATTCCCTCCGCCGTGACAATGAATCTCTCCTTCAAGAGATTAGTAAACTG 680
Query 627 AAAACTAAGCTTAACGGAGGAGGag-a-a-gaagaagaaga-ga-a-CAACGCGGCGGCG 680
||||| |||||||| |||||||||| | | ||||||||||| || | ||||||||||| |
Sbjct 681 AAAACGAAGCTTAATGGAGGAGGAGGAGAAGAAGAAGAAGAAGAGAACAACGCGGCGGTG 740
Query 681 ACAACAACGGAGAGTGATATTTCGGTCAAGGAGGAAGAAGTTTCGTTGCCAGAGAAGATC 740
||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 741 ACAAC---GGAGAGTGATATTTCGGTCAAGGAGGAAGAAGTTTCGTTGCCGGAGAAGATT 797
Query 741 ACAGAACCACCGTCGTCTCCTCCACAGTTTCTTGAACATTCCGATGGTCTTAATTACCGG 800
||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 798 ACAGAGGCACCGTCGTCTCCTCCACAGTTTCTTGAACATTCTGATGGTCTTAATTACCGG 857
Query 801 AGTTTCACTGATCTACGTGACCTTCTTCCATTAAAAGCGGCGGCTTCTTCTTTCGCCGCC 860
|||||||| ||||||||||| |||||||||||||| |||||||||||||| |||||||||
Sbjct 858 AGTTTCACAGATCTACGTGATCTTCTTCCATTAAAGGCGGCGGCTTCTTCATTCGCCGCC 917
Query 861 GCAGCTGGATCTTCAGACAGTAGCGATTCAAGCGCTCTTCTGAACGAGGAAAGCAGCTCT 920
|||||||||||||||||||||||||||||||||||||| ||||| || ||||||||||||
Sbjct 918 GCAGCTGGATCTTCAGACAGTAGCGATTCAAGCGCTCTGCTGAATGAAGAAAGCAGCTCT 977
Query 921 AACGTCACTGTGGCGGCTCCGGTGACGGTCCCCGGCGGCAATTTCTTCCAGTTTGTGAAA 980
|| |||||||||||||||||||||||||| || || || |||||||||||||||||||||
Sbjct 978 AATGTCACTGTGGCGGCTCCGGTGACGGTTCCAGGAGGTAATTTCTTCCAGTTTGTGAAA 1037
Query 981 ATGGAGCAGACGGAGGATCACGAGGACTTTTTGAGTGGAGAAGAAGCTTGTGAATTCTTT 1040
|||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||
Sbjct 1038 ATGGAGCAGACGGAGGATCATGAGGACTTTCTGAGTGGAGAAGAAGCTTGTGAATTCTTT 1097
Query 1041 TCCGATAAACAACCGCCGTCTCTACACTGGTACTCCACCGTCGATCACTGGACTTGAAGC 1100
|||||| |||||||||||||||||||||||||||||||||| ||||| |||| |||||||
Sbjct 1098 TCCGATGAACAACCGCCGTCTCTACACTGGTACTCCACCGTTGATCATTGGAATTGAAGC 1157
Query 1101 TGTAAACACCACTGGAAGAGATTTTGGATT--AT-ATGCTCTCTTCTTCTCTGCTTCTCT 1157
|| ||||||||| ||||||||||||||||| || | | | || ||| | | |||||||
Sbjct 1158 TGAAAACACCACCGGAAGAGATTTTGGATTGGATTA-GATG-CT-CTT-T-T-CTTCTCT 1211
Query 1158 GTGGAAAAAACAGAGGAGGGCACAATGGGAATAATGGTTAAAATTGAAGGGTGAAAGGGA 1217
|||||||||||||||||||||| ||||||||||| | ||||||||||||||||||||||
Sbjct 1212 GTGGAAAAAACAGAGGAGGGCAAAATGGGAATAAAG-TTAAAATTGAAGGGTGAAAGGGC 1270
Query 1218 AAAATTAAGGAAGGGTTAAATCTGGGCGGGAATAATGATTTTAGGGTGAATTTGTAATTA 1277
|| ||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||
Sbjct 1271 AA--TTAAGGAAGGGTTAAGTCTGGGCGGGAATAATGATTT-AGGGTGAATTTGTAATTA 1327
Query 1278 TGCTTTT-CTCTGGTGGTTT-CGTGCACTTCTTGTAATTAAG-ATCA--A-A-----GAG 1326
||||||| |||| ||| ||| ||||||||||||||||||||| |||| | | |||
Sbjct 1328 TGCTTTTTCTCTAGTGATTTTCGTGCACTTCTTGTAATTAAGGATCATCAGATCAAAGAG 1387
Query 1327 AAATTGAGAAGGG---aa-a----aaa---a----TTCAGCATGGACTCTTTAAATTACA 1371
||||||||||||| || | ||| | |||||||||| ||||||||||||||
Sbjct 1388 AAATTGAGAAGGGGTTAACATGTCAAAGGCAAAAATTCAGCATGGGCTCTTTAAATTACA 1447
Query 1372 ATAGTCGACCCTTAAAAACTAAATTATACCACTTTTAACCCTTAAATAAATTTTTGAATC 1431
|| | ||||||| ||| |||||||||||||||| | |||||||||| ||||||||||||
Sbjct 1448 AT--T-GACCCTTGAAACCTAAATTATACCACTTCTGACCCTTAAATCAATTTTTGAATC 1504
Query 1432 ATAAAA 1437
||||||
Sbjct 1505 ATAAAA 1510
> AT4G40060.1 | Symbols: ATHB16, ATHB-16, HB16 | homeobox protein
16 | chr4:18571359-18573084 REVERSE LENGTH=1518
Length=1518
Score = 326 bits (176), Expect = 5e-88
Identities = 272/318 (86%), Gaps = 8/318 (3%)
Strand=Plus/Plus
Query 330 CACGTGGGTTTGTCGGAGAAGAAGAGAAGGTTAAGCA-TTAACCAAGTTAAAGCT-TTGG 387
||| ||||| | ||||||||||||||||| |||| | || ||||||| |||||| || |
Sbjct 467 CACATGGGTCTATCGGAGAAGAAGAGAAGATTAA-AAGTTGACCAAGTCAAAGCTCTT-G 524
Query 388 AGAAGAATTTTG-AGTTAGAGAATAAGCTTGAGCCTGAGAGGAAAGTTAAGTTAGCTCAA 446
|||||||||| | | || |||||||| || || |||||||||||| ||| ||||| |||
Sbjct 525 AGAAGAATTTCGAACTT-GAGAATAAACTCGAACCTGAGAGGAAAACTAAATTAGCACAA 583
Query 447 GAACTTGGTCTTCAGCCTCGTCAAGTAGCTGTTTGGTTTCAGAACCGTCGTGCACGGTGG 506
|| ||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 584 GAGCTTGGACTTCAACCTCGTCAAGTAGCTGTTTGGTTTCAGAACCGTCGTGCACGGTGG 643
Query 507 AAGACAAAACAGCTTGAGAAAGATTACGGTGTTCTTAAAACCCAGTATGATTCTCTCCGT 566
|| |||||||||||||| |||||||||||||||||||| || || |||||||||||
Sbjct 644 AAAACAAAACAGCTTGAAAAAGATTACGGTGTTCTTAAGGGTCAATACGATTCTCTCCGC 703
Query 567 CACAACTTT-GATTCCCTCCGCCGTGACAATGAATCTCTCCTTCAAGAGATTAGTAAACT 625
||||| ||| ||||| ||||||||||||||||| || || || ||||||||||||||| |
Sbjct 704 CACAA-TTTCGATTCTCTCCGCCGTGACAATGATTCCCTTCTCCAAGAGATTAGTAAAAT 762
Query 626 GAAAACTAAGCTTAACGG 643
||| ||||| | |||||
Sbjct 763 CAAAGCTAAGGTAAACGG 780
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 70832968995
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5