BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg481106
Length=1025
Score E
Sequences producing significant alignments: (Bits) Value
AT2G22460.1 | Symbols: | Protein of unknown function, DUF617 |... 1555 0.0
> AT2G22460.1 | Symbols: | Protein of unknown function, DUF617
| chr2:9533094-9534119 REVERSE LENGTH=1026
Length=1026
Score = 1555 bits (842), Expect = 0.0
Identities = 969/1030 (94%), Gaps = 10/1030 (1%)
Strand=Plus/Plus
Query 1 TTTTTTGCTTCATCGGAAGTATTAACAATGTCAAAGAGCAAAGTCATAGCTTCAATGGAG 60
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2 TTTTTTGCTTCATCAGAAGTATTAACAATGTCAAAGAGCAAAGTCATAGCTTCAATGGAG 61
Query 61 TTTCAATCGACGGTGGTAACCACCGTAGACTGCCAGAAACAAGTCAGGTCATGGCGTCTC 120
|||||||||||||||||| | |||||||||||||||||||||||| ||||||||||||||
Sbjct 62 TTTCAATCGACGGTGGTAGCAACCGTAGACTGCCAGAAACAAGTCCGGTCATGGCGTCTC 121
Query 121 CTCCGCTCATTCATTCAGCTTCTAATCCCAACTTGCAACTGCACATTAGTCCAAGAACTC 180
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 122 CTCCGCTCATTCATTCAGCTTTTAATCCCAACTTGCAACTGCACATTAGTCCAAGAACTC 181
Query 181 GAACAAGATAACACTAACTTGAGAGGAAAGAACCTCTACAACGACATCAAATCACGCACG 240
|||||||||||||||||||||||||| ||||| |||||||| ||||||||||||||||||
Sbjct 182 GAACAAGATAACACTAACTTGAGAGGCAAGAAACTCTACAATGACATCAAATCACGCACG 241
Query 241 TCTTCTTTTCGTTCCTCTTCATCCCTTTCTTCGTCGACTGTCACTGGAACAATCTTCGGA 300
||||| ||||| |||||||| ||||||||||| || || ||||| |||||||||||||||
Sbjct 242 TCTTCCTTTCGCTCCTCTTCGTCCCTTTCTTCATCTACAGTCACAGGAACAATCTTCGGA 301
Query 301 TACCGCAAAGGAAAGATCAATTTCTGTATCCAAACACCAAGAAAATCAACAAACCTCGAT 360
||||| |||||||| |||||||||||||||||||||||||||||||| |||||||| |||
Sbjct 302 TACCGAAAAGGAAAAATCAATTTCTGTATCCAAACACCAAGAAAATCGACAAACCTTGAT 361
Query 361 CTTCTCCTCGAGCTAGCAGTTCCAACGACGGTTTTAGCTCGAGAAATGAGAGAAGGCGCG 420
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 362 CTTCTCCTCGAGCTAGCAGTTCCAACGACGGTTTTAGCTCGAGAAATGAGAGAAGGAGCG 421
Query 421 TTGCGTATAGTGTTAGAACGTAACAACGAAAAAGAAGACGACGACTCTATTTTGTCAAAG 480
||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||
Sbjct 422 TTGCGTATAGTGTTAGAACGTAACAACGAAAAACAAGACGACGACTCTTTTTTGTCAAAG 481
Query 481 CCATTTTGGAACATGTATTGCAACGGAAAAAGAGTTGGGTATGCGAGAAAACGCAGTCCG 540
||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||
Sbjct 482 CCATTTTGGAACATGTATTGCAATGGAAAAAGAGTTGGTTATGCGAGAAAACGCAGTCCC 541
Query 541 TCTCAAGATGACATGACGGCGTTGACCGCTCTGAGTAAAGTGATGGTTGGAGCCGGCGTT 600
||||| |||||||||||||||||||||||||| ||||||||| |||||||||| || |||
Sbjct 542 TCTCAGGATGACATGACGGCGTTGACCGCTCTTAGTAAAGTGGTGGTTGGAGCAGGAGTT 601
Query 601 GTGACTGGGAAAGAACTTGGCCGGTTCGATGATGAATTGATGTATTTGAGAGCTAGTTTC 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 602 GTGACTGGGAAAGAACTTGGCCGGTTCGATGATGAATTGATGTATTTGAGAGCTAGTTTC 661
Query 661 AGACGAGTGAATGGTTCGAAAGAATCTGAATCTTTCCATTTGATTGATCCAGCTGGGAAT 720
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 662 AGACGAGTTAATGGTTCGAAAGAATCTGAATCTTTCCATTTGATTGATCCAGCTGGGAAT 721
Query 721 ATCGGACAAGAACTCAGTATCTTCATCGTCCCATCATCGGTCTGAGTTAATTACC-GCTG 779
|| ||||||||||||||||||||||| ||||||||||| |||||| || |||||| | ||
Sbjct 722 ATTGGACAAGAACTCAGTATCTTCATTGTCCCATCATCAGTCTGATTTGATTACCCG-TG 780
Query 780 GAG-TGATCGTACATAAGAGTTCTGTTTTCAAGTTTCTTCCCtttttttttttCTTTGG- 837
||| || |||||||||||||||||||||||||||||||| |||||| ||||||| ||||
Sbjct 781 GAGATGCTCGTACATAAGAGTTCTGTTTTCAAGTTTCTTTCCTTTTATTTTTTCCTTGGG 840
Query 838 TCTAGAGAAAAGAACTTGTTTTTGAGTCGTGCTTAAAGCTATTGGCTTTAGCTCTGGCTT 897
||||||||||||||||||||||||||||||||| |||||| |||| ||||||||||||||
Sbjct 841 TCTAGAGAAAAGAACTTGTTTTTGAGTCGTGCT-AAAGCTTTTGGTTTTAGCTCTGGCTT 899
Query 898 TGTATGTAATCTACATCATACCAATTCGATAGTCCATTGATTCGAGTTT-AAGTGTTT-A 955
|||||||||| ||||| | ||| |||||||||||||||||| |||||| || | ||| |
Sbjct 900 TGTATGTAATTTACAT-A--CCATTTCGATAGTCCATTGATTTGAGTTTTAATTTTTTTA 956
Query 956 TCTTGTTGCTATCATTTCTGTACTACATAAATAATGGTCTCGTCTTTaaaaaaaCTGCTT 1015
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||
Sbjct 957 TCTTGTTGCTATCATTTCTGTACTACATAAATAATGGTCTTGTCTTTAAAAAAACTGATT 1016
Query 1016 ATCAAGAGAC 1025
|| ||||||
Sbjct 1017 ATTTAGAGAC 1026
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50234147000
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5