BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg481107
Length=685
Score E
Sequences producing significant alignments: (Bits) Value
AT2G22470.1 | Symbols: AGP2, ATAGP2 | arabinogalactan protein 2... 1035 0.0
> AT2G22470.1 | Symbols: AGP2, ATAGP2 | arabinogalactan protein
2 | chr2:9538197-9538879 REVERSE LENGTH=683
Length=683
Score = 1035 bits (560), Expect = 0.0
Identities = 643/683 (94%), Gaps = 5/683 (1%)
Strand=Plus/Plus
Query 1 ACACCAtcaacaaaaacaaagaaaagagtttaaaacatcaaacaaacagagtttcaagat 60
|||||||||||||||| |||| ||||||||| ||||| ||||| | |||||||||||||
Sbjct 1 ACACCATCAACAAAAATAAAG--AAGAGTTTATAACATTAAACAGAGAGAGTTTCAAGAT 58
Query 61 tcagacaaagaagaGAGATTCTAAAAATGAATTCTAAGGCAATGCAAGCTTTGATCTTTC 120
|||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||
Sbjct 59 TCAGACAAAGAAGAGATAATCTAAAAATGAATTCTAAGGCAATGCAAGCTTTGATCTTTC 118
Query 121 TTGGTTTCTTGGCCACTTCATGTCTCGCTCAAGCGCCTGCACCTGCACCAACCACCGTTA 180
|||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||
Sbjct 119 TTGGTTTCTTGGCCACTTCATGTCTCGCTCAAGCTCCTGCACCAGCACCAACCACCGTTA 178
Query 181 CTCCTCCACCAACGGCACTTCCTCCGGTGACAGCAGAAACACCTTCACCAGTTGCCTCAC 240
|||||||||||||||| |||||||| |||||||||||||||||||||||| |||| ||||
Sbjct 179 CTCCTCCACCAACGGCGCTTCCTCCAGTGACAGCAGAAACACCTTCACCAATTGCTTCAC 238
Query 241 CGCCGGTCCCAGTTAACGAGCCAACTCCAGCTCCAACCACTTCTCCAACAACATCTCCGG 300
|||| || |||||||||||||||||||||||||| |||||||||||||||||||| ||||
Sbjct 239 CGCCTGTTCCAGTTAACGAGCCAACTCCAGCTCCTACCACTTCTCCAACAACATCCCCGG 298
Query 301 TTGCTTCTCCTCCTCAGACCGATGCTCCTGCTCCTGGTCCCTCCGCTGGATTAACTCCAA 360
|||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||
Sbjct 299 TTGCTTCTCCTCCTCAGACCGATGCTCCTGCTCCCGGTCCTTCCGCTGGATTAACTCCAA 358
Query 361 CTCCGGCTCCAGCTCCAGGACCAGACGGTGCCGCTGATGCACCAAGCGCCGCGTGGGCTA 420
|| || ||||||||||||||||||||||||| |||||||||||||| ||||| |||||||
Sbjct 359 CTTCGTCTCCAGCTCCAGGACCAGACGGTGCTGCTGATGCACCAAGTGCCGCATGGGCTA 418
Query 421 ACAAAGCTTTCCTTGTAGGAACAGCTGTTGCCGGAGCTTTATACGCTGTCGCTTTGGCTT 480
|||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||
Sbjct 419 ACAAAGCTTTCCTTGTGGGAACAGCTGTTGCCGGAGCTTTATACGCTGTCGTTTTGGCTT 478
Query 481 AGAGAGCTTTTGAGTTTGGTGGATTTGGATCCTCTGCTTTCTATTACTGTTTTATCTTAA 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 479 AGAGAGCTTTTGAGTTTGGTGGATTTGGATCCTCTGCTTTCTATTACTGTTTTATTTTAA 538
Query 541 TTACTTCTTCTCGTTCATATTTGTTATTTACTTCTATTATTATTTTGACGTGGACACATG 600
|||||||||||||||||||||||||||||||| ||||||| |||||||||||||||| ||
Sbjct 539 TTACTTCTTCTCGTTCATATTTGTTATTTACTACTATTATCATTTTGACGTGGACACTTG 598
Query 601 TATAATTTGTTGGGGTTGAGATGAACATAGAGACGAGATGGTGTAATATCTATTCTTTTT 660
| | || ||||||| |||||||||||||||||| | ||||||||||||||||||||||
Sbjct 599 T-TG-TT-GTTGGGGATGAGATGAACATAGAGACAATATGGTGTAATATCTATTCTTTTA 655
Query 661 TATAAATCAAAATAATTCTTTTA 683
|||||||||||||||||||||||
Sbjct 656 TATAAATCAAAATAATTCTTTTA 678
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 33154537020
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5