BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg481108
Length=1152
Score E
Sequences producing significant alignments: (Bits) Value
AT2G22475.1 | Symbols: GEM | GRAM domain family protein | chr2:... 1389 0.0
AT4G40100.1 | Symbols: | GRAM domain family protein | chr4:185... 196 3e-49
> AT2G22475.1 | Symbols: GEM | GRAM domain family protein | chr2:9541401-9545010
FORWARD LENGTH=1254
Length=1254
Score = 1389 bits (752), Expect = 0.0
Identities = 972/1072 (91%), Gaps = 39/1072 (4%)
Strand=Plus/Plus
Query 1 ATCCTTGCAGAATTCAAACTCAAACAAGCCGTTTATCTCACGCGCCGCCGTACGCGCCAC 60
||||||||| ||||||||||||||||| ||||||||||||||||||||||||| ||||||
Sbjct 40 ATCCTTGCAAAATTCAAACTCAAACAAACCGTTTATCTCACGCGCCGCCGTACTCGCCAC 99
Query 61 GATCCGTCCTTGGAGATCAATTGATGGAGCCGCCGAAGGGAGATACCGAAGTGAAGACTG 120
|||||||| ||||||| ||||| ||||||||||||||||||||||||| |||||||||||
Sbjct 100 GATCCGTCTTTGGAGACCAATTTATGGAGCCGCCGAAGGGAGATACCGTAGTGAAGACTG 159
Query 121 ATGTTCCGGTCAAGGATCCATCGCT----G-AG-CG--T------C-------GTCGAGG 159
| || ||||| |||||||||||||| | | || | | |||||||
Sbjct 160 AGGTCCCGGTGAAGGATCCATCGCTAAGCGTCGTCGATTCGAAAACGAAGGGAGTCGAGG 219
Query 160 ATGCGAGCACGGAGATATCTTTGTCCGATGAGGTT-TTATCGA-A-G--GGG-AGCGATA 213
|||||| ||| |||||| | ||||||||||||||| ||||| | | ||| ||||||
Sbjct 220 ATGCGAACACTGAGATAGCCTTGTCCGATGAGGTTGAAATCGAGACGAAGGGAAGCGATT 279
Query 214 CAACACCGGTGAAAGCTCCGAGTCGAACATCGTCTGGATCGAAGAAATCTGTACACTGGA 273
| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 280 CGACACCGGTGAAAGCTCCGAGTCGAACATCGTCTGGATCGAAGAAATCTGTACATTGGA 339
Query 274 GCCCCGAATTGGTGTCTGGGCCTCAGGAACCGGATCAGAAAGCTGCATCATCGTCTTCTT 333
||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||
Sbjct 340 GCCCCGAATTGGTGTCTGGATCTCAGGAACCGGATCAGAAAGCTG---CATCGTCTTCTT 396
Query 334 CGGGTGGATCTAATCCGTATATTGCTCGTTCTCCGGCTGAGACGTCGTCAGATGCGTCGT 393
||| |||||||||||||||||||||||||||||| |||||||| | |||||||| ||||
Sbjct 397 CGGCTGGATCTAATCCGTATATTGCTCGTTCTCCAGCTGAGAC-T--TCAGATGCTTCGT 453
Query 394 T---AGATACGATGGAGTCTGTGAAAGGAGTGCTTGGTAGATGGGGAAAGAAGGTTGCAG 450
| ||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||
Sbjct 454 TGAAAGATACGATGGAGACTGTGAAAGGAGTGCTTGGTAGATGGGGAAAGAGGGTTGCAG 513
Query 451 AAGCAGCGAAGAAGACGGAGAGCCTTGCCGGGAACACATGGCAACACCTGAGAACTGCTC 510
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 514 AAGCAGCAAAGAAGACGGAGAGCCTTGCCGGGAACACATGGCAACACCTGAGAACTGCTC 573
Query 511 CGAGTTTTGCGGATGCTGCTATGGGAAGAATTGCACAGAGTACTAAGGTCTTTGCAGAAG 570
||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||
Sbjct 574 CGAGTTTTGCGGATGCTGCAATGGGAAGAATTGCACAGAGTACAAAGGTCTTTGCAGAAG 633
Query 571 GAGGATATGAGAAGATATTTCGACAAACCTTTGAGACAGTTCCTGAAGAACAACTGCTAA 630
||||||||||||||||||| ||||||||||||||||||| ||| |||||||| ||||||
Sbjct 634 GAGGATATGAGAAGATATTCCGACAAACCTTTGAGACAGATCCCGAAGAACAGTTGCTAA 693
Query 631 ATTCTTTTGCATGTTACTTGTCAACATCAGCTGGCCCAGTTATGGGAGTTGTATATATAT 690
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 694 ATTCTTTTGCATGTTACTTGTCAACATCAGCTGGCCCAGTTATGGGAGTTCTATATATAT 753
Query 691 CAACTGCCAAACTTGCTTACTGTAGTGACAATCCTCTCTCCTATAAAAATGGTGATCAAA 750
| | ||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||
Sbjct 754 CCAGTGCCAAACTTGCTTACTGTAGTGACAACCCTCTCTCCTATAAAAACGGTGATCAAA 813
Query 751 CCGAATGGAGCTATTACAAGGTAGTAATCCCATTACATCAACTTAAAGCAGTGAACCCAT 810
|||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||
Sbjct 814 CCGAATGGAGCTATTACAAGGTAGTAATTCCATTACATCAACTTAAAGCAGTGAATCCAT 873
Query 811 CAACAAGCATAGTCAATCCTGCAGAGAAGTACATTCAGGTGATTTCGGTAGACAATCATG 870
|| | ||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 874 CAGCGAGCATAGTCAATCCTGCAGAGAAGTACATACAGGTGATTTCGGTAGACAATCATG 933
Query 871 AGTTCTGGTTCATGGGTTTCTTAAACTACGAAGGCGCCGTCACATCTCTGCAAGATTCTT 930
|||| |||||||||||||| ||||||||||| ||||| ||||| ||||||||||||||||
Sbjct 934 AGTTTTGGTTCATGGGTTTTTTAAACTACGACGGCGCTGTCACGTCTCTGCAAGATTCTT 993
Query 931 TGCAAGCTGGTGCTTTACGGTCGGTGTGATACATA-CTGGATGAATGATGACCATAAAAG 989
||||||| ||||||||| ||||||||||||||||| |||||||| |||||||||||||||
Sbjct 994 TGCAAGCCGGTGCTTTAAGGTCGGTGTGATACATAACTGGATGACTGATGACCATAAAAG 1053
Query 990 CCTGCTGGTCTGCAACG-TTGATTGCTTAGTCATATCAGAAGACTCAGATTT 1040
| || || ||| || | || ||||||||||||||||||||||||| ||||
Sbjct 1054 CATGTTGATCTCCACCTCTTC-TTGCTTAGTCATATCAGAAGACTCAAATTT 1104
Score = 122 bits (66), Expect = 5e-27
Identities = 84/92 (91%), Gaps = 3/92 (3%)
Strand=Plus/Plus
Query 1061 AAATTTAATTTAAAATGTTTTATCTTTTGATATTTTTATGAGAGGACAGCTTAATTGTAA 1120
||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||| ||
Sbjct 1166 AAATTTACTTTAAAATGTTTTATCTTTTGATATTTTTATGAGAAGACAGCTTAATTGCAA 1225
Query 1121 TTCATCATTCAGTAGCAGTTCCTTTTAGTTTC 1152
|| | ||||| |||||||| |||||||||||
Sbjct 1226 TT--T-ATTCAATAGCAGTTGCTTTTAGTTTC 1254
> AT4G40100.1 | Symbols: | GRAM domain family protein | chr4:18583244-18584524
FORWARD LENGTH=678
Length=678
Score = 196 bits (106), Expect = 3e-49
Identities = 163/191 (85%), Gaps = 2/191 (1%)
Strand=Plus/Plus
Query 771 GTAGTAATCCCATTACATCAACTTAAAGCAGTGAACCCATCAACAAGCATAGTCAATCCT 830
|||||||||||||||||||| |||||| | || ||||| || | ||||| ||| ||||||
Sbjct 487 GTAGTAATCCCATTACATCAGCTTAAATCGGTTAACCCTTCGATAAGCACAGTTAATCCT 546
Query 831 GCAGAGAAGTACATTCAGGTGATTTCGGTAGACAATCATGAGTTCTGGTTCATGGGTTTC 890
||||| |||||||| ||||| || ||||| ||| | |||||||| |||||||||||||||
Sbjct 547 GCAGAAAAGTACATCCAGGTAATCTCGGTCGACGACCATGAGTTTTGGTTCATGGGTTTC 606
Query 891 TTAAACTACGAAGGCGCCGTCACATCTCTGCAAGATTCTTTGCAAGCTGGTGCTTTACGG 950
||||||||||||||||| || |||||||| |||||| | |||||||| ||||| | | |
Sbjct 607 TTAAACTACGAAGGCGCTGTTACATCTCTACAAGATACATTGCAAGCCGGTGCCTCA-G- 664
Query 951 TCGGTGTGATA 961
|| ||||||||
Sbjct 665 TCTGTGTGATA 675
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56525813670
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5