BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg481108 Length=1152 Score E Sequences producing significant alignments: (Bits) Value AT2G22475.1 | Symbols: GEM | GRAM domain family protein | chr2:... 1389 0.0 AT4G40100.1 | Symbols: | GRAM domain family protein | chr4:185... 196 3e-49 > AT2G22475.1 | Symbols: GEM | GRAM domain family protein | chr2:9541401-9545010 FORWARD LENGTH=1254 Length=1254 Score = 1389 bits (752), Expect = 0.0 Identities = 972/1072 (91%), Gaps = 39/1072 (4%) Strand=Plus/Plus Query 1 ATCCTTGCAGAATTCAAACTCAAACAAGCCGTTTATCTCACGCGCCGCCGTACGCGCCAC 60 ||||||||| ||||||||||||||||| ||||||||||||||||||||||||| |||||| Sbjct 40 ATCCTTGCAAAATTCAAACTCAAACAAACCGTTTATCTCACGCGCCGCCGTACTCGCCAC 99 Query 61 GATCCGTCCTTGGAGATCAATTGATGGAGCCGCCGAAGGGAGATACCGAAGTGAAGACTG 120 |||||||| ||||||| ||||| ||||||||||||||||||||||||| ||||||||||| Sbjct 100 GATCCGTCTTTGGAGACCAATTTATGGAGCCGCCGAAGGGAGATACCGTAGTGAAGACTG 159 Query 121 ATGTTCCGGTCAAGGATCCATCGCT----G-AG-CG--T------C-------GTCGAGG 159 | || ||||| |||||||||||||| | | || | | ||||||| Sbjct 160 AGGTCCCGGTGAAGGATCCATCGCTAAGCGTCGTCGATTCGAAAACGAAGGGAGTCGAGG 219 Query 160 ATGCGAGCACGGAGATATCTTTGTCCGATGAGGTT-TTATCGA-A-G--GGG-AGCGATA 213 |||||| ||| |||||| | ||||||||||||||| ||||| | | ||| |||||| Sbjct 220 ATGCGAACACTGAGATAGCCTTGTCCGATGAGGTTGAAATCGAGACGAAGGGAAGCGATT 279 Query 214 CAACACCGGTGAAAGCTCCGAGTCGAACATCGTCTGGATCGAAGAAATCTGTACACTGGA 273 | ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 280 CGACACCGGTGAAAGCTCCGAGTCGAACATCGTCTGGATCGAAGAAATCTGTACATTGGA 339 Query 274 GCCCCGAATTGGTGTCTGGGCCTCAGGAACCGGATCAGAAAGCTGCATCATCGTCTTCTT 333 ||||||||||||||||||| |||||||||||||||||||||||| |||||||||||| Sbjct 340 GCCCCGAATTGGTGTCTGGATCTCAGGAACCGGATCAGAAAGCTG---CATCGTCTTCTT 396 Query 334 CGGGTGGATCTAATCCGTATATTGCTCGTTCTCCGGCTGAGACGTCGTCAGATGCGTCGT 393 ||| |||||||||||||||||||||||||||||| |||||||| | |||||||| |||| Sbjct 397 CGGCTGGATCTAATCCGTATATTGCTCGTTCTCCAGCTGAGAC-T--TCAGATGCTTCGT 453 Query 394 T---AGATACGATGGAGTCTGTGAAAGGAGTGCTTGGTAGATGGGGAAAGAAGGTTGCAG 450 | ||||||||||||| ||||||||||||||||||||||||||||||||| |||||||| Sbjct 454 TGAAAGATACGATGGAGACTGTGAAAGGAGTGCTTGGTAGATGGGGAAAGAGGGTTGCAG 513 Query 451 AAGCAGCGAAGAAGACGGAGAGCCTTGCCGGGAACACATGGCAACACCTGAGAACTGCTC 510 ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 514 AAGCAGCAAAGAAGACGGAGAGCCTTGCCGGGAACACATGGCAACACCTGAGAACTGCTC 573 Query 511 CGAGTTTTGCGGATGCTGCTATGGGAAGAATTGCACAGAGTACTAAGGTCTTTGCAGAAG 570 ||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||| Sbjct 574 CGAGTTTTGCGGATGCTGCAATGGGAAGAATTGCACAGAGTACAAAGGTCTTTGCAGAAG 633 Query 571 GAGGATATGAGAAGATATTTCGACAAACCTTTGAGACAGTTCCTGAAGAACAACTGCTAA 630 ||||||||||||||||||| ||||||||||||||||||| ||| |||||||| |||||| Sbjct 634 GAGGATATGAGAAGATATTCCGACAAACCTTTGAGACAGATCCCGAAGAACAGTTGCTAA 693 Query 631 ATTCTTTTGCATGTTACTTGTCAACATCAGCTGGCCCAGTTATGGGAGTTGTATATATAT 690 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 694 ATTCTTTTGCATGTTACTTGTCAACATCAGCTGGCCCAGTTATGGGAGTTCTATATATAT 753 Query 691 CAACTGCCAAACTTGCTTACTGTAGTGACAATCCTCTCTCCTATAAAAATGGTGATCAAA 750 | | ||||||||||||||||||||||||||| ||||||||||||||||| |||||||||| Sbjct 754 CCAGTGCCAAACTTGCTTACTGTAGTGACAACCCTCTCTCCTATAAAAACGGTGATCAAA 813 Query 751 CCGAATGGAGCTATTACAAGGTAGTAATCCCATTACATCAACTTAAAGCAGTGAACCCAT 810 |||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||| Sbjct 814 CCGAATGGAGCTATTACAAGGTAGTAATTCCATTACATCAACTTAAAGCAGTGAATCCAT 873 Query 811 CAACAAGCATAGTCAATCCTGCAGAGAAGTACATTCAGGTGATTTCGGTAGACAATCATG 870 || | ||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 874 CAGCGAGCATAGTCAATCCTGCAGAGAAGTACATACAGGTGATTTCGGTAGACAATCATG 933 Query 871 AGTTCTGGTTCATGGGTTTCTTAAACTACGAAGGCGCCGTCACATCTCTGCAAGATTCTT 930 |||| |||||||||||||| ||||||||||| ||||| ||||| |||||||||||||||| Sbjct 934 AGTTTTGGTTCATGGGTTTTTTAAACTACGACGGCGCTGTCACGTCTCTGCAAGATTCTT 993 Query 931 TGCAAGCTGGTGCTTTACGGTCGGTGTGATACATA-CTGGATGAATGATGACCATAAAAG 989 ||||||| ||||||||| ||||||||||||||||| |||||||| ||||||||||||||| Sbjct 994 TGCAAGCCGGTGCTTTAAGGTCGGTGTGATACATAACTGGATGACTGATGACCATAAAAG 1053 Query 990 CCTGCTGGTCTGCAACG-TTGATTGCTTAGTCATATCAGAAGACTCAGATTT 1040 | || || ||| || | || ||||||||||||||||||||||||| |||| Sbjct 1054 CATGTTGATCTCCACCTCTTC-TTGCTTAGTCATATCAGAAGACTCAAATTT 1104 Score = 122 bits (66), Expect = 5e-27 Identities = 84/92 (91%), Gaps = 3/92 (3%) Strand=Plus/Plus Query 1061 AAATTTAATTTAAAATGTTTTATCTTTTGATATTTTTATGAGAGGACAGCTTAATTGTAA 1120 ||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||| || Sbjct 1166 AAATTTACTTTAAAATGTTTTATCTTTTGATATTTTTATGAGAAGACAGCTTAATTGCAA 1225 Query 1121 TTCATCATTCAGTAGCAGTTCCTTTTAGTTTC 1152 || | ||||| |||||||| ||||||||||| Sbjct 1226 TT--T-ATTCAATAGCAGTTGCTTTTAGTTTC 1254 > AT4G40100.1 | Symbols: | GRAM domain family protein | chr4:18583244-18584524 FORWARD LENGTH=678 Length=678 Score = 196 bits (106), Expect = 3e-49 Identities = 163/191 (85%), Gaps = 2/191 (1%) Strand=Plus/Plus Query 771 GTAGTAATCCCATTACATCAACTTAAAGCAGTGAACCCATCAACAAGCATAGTCAATCCT 830 |||||||||||||||||||| |||||| | || ||||| || | ||||| ||| |||||| Sbjct 487 GTAGTAATCCCATTACATCAGCTTAAATCGGTTAACCCTTCGATAAGCACAGTTAATCCT 546 Query 831 GCAGAGAAGTACATTCAGGTGATTTCGGTAGACAATCATGAGTTCTGGTTCATGGGTTTC 890 ||||| |||||||| ||||| || ||||| ||| | |||||||| ||||||||||||||| Sbjct 547 GCAGAAAAGTACATCCAGGTAATCTCGGTCGACGACCATGAGTTTTGGTTCATGGGTTTC 606 Query 891 TTAAACTACGAAGGCGCCGTCACATCTCTGCAAGATTCTTTGCAAGCTGGTGCTTTACGG 950 ||||||||||||||||| || |||||||| |||||| | |||||||| ||||| | | | Sbjct 607 TTAAACTACGAAGGCGCTGTTACATCTCTACAAGATACATTGCAAGCCGGTGCCTCA-G- 664 Query 951 TCGGTGTGATA 961 || |||||||| Sbjct 665 TCTGTGTGATA 675 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 56525813670 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5