BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg481109
Length=1814
Score E
Sequences producing significant alignments: (Bits) Value
AT2G22480.1 | Symbols: PFK5 | phosphofructokinase 5 | chr2:9545... 2776 0.0
> AT2G22480.1 | Symbols: PFK5 | phosphofructokinase 5 | chr2:9545547-9548566
FORWARD LENGTH=1889
Length=1889
Score = 2776 bits (1503), Expect = 0.0
Identities = 1728/1834 (94%), Gaps = 26/1834 (1%)
Strand=Plus/Plus
Query 1 TGtttttttttttttttGTAAAATTGTCAAAAACTCCCTCCaaaaaaaaaaCTCAATTGA 60
||| |||||||| ||||||||| ||| |||||||||||||| ||||||||||| | ||||
Sbjct 16 TGTGTTTTTTTTGTTTTGTAAATTTGGCAAAAACTCCCTCC-AAAAAAAAACTTAGTTGA 74
Query 61 CTGAGAAAACTAAGCAAAAGGA--TCCGATCGGAATC-TC-----GGCCATGGATGCTCT 112
||||||||||||||||||| || ||||||||||||| || ||||||||||||||
Sbjct 75 CTGAGAAAACTAAGCAAAAAGATCTCCGATCGGAATCTTCTTATTCGCCATGGATGCTCT 134
Query 113 TTCTCAGGCGATCACTTCCGGGATCTCCTCCGTTCCTTACAAGAAGAACAATTCTTCTCT 172
|||||||||||||| |||||||| | |||||||||||||||||| || |||||||||
Sbjct 135 TTCTCAGGCGATCAGTTCCGGGA--T-CTCCGTTCCTTACAAGAACAATTCTTCTTCTCT 191
Query 173 CGTTCCTTCTCATGGACTCTCCTCCTTAATCCTCCGG-AATACGAGATCTCCGGCGAATC 231
|||||||||||| |||||| ||||||||||||||||| ||| |||||||||||| |||||
Sbjct 192 CGTTCCTTCTCACGGACTCACCTCCTTAATCCTCCGGAAAT-CGAGATCTCCGGTGAATC 250
Query 232 CCTCATCACGAATCT--CG--TCGGTGAGAGCTTCGGCGATTCAACATAGCAAAACCTCA 287
|||||||||| |||| || |||||| ||||||||| ||||||||| ||||||||||||
Sbjct 251 CCTCATCACG-ATCTCGCGTCTCGGTGCGAGCTTCGGAGATTCAACACAGCAAAACCTCA 309
Query 288 GCTTCATCGATCGATCTCAGCGATCCAGATTGGAAATTAAAGTATGAGAAAGATTTCGAG 347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 310 GCTTCATCGATCGATCTCAGCGATCCAGATTGGAAATTAAAGTATGAGAAAGATTTCGAG 369
Query 348 CAACGATTCAACATCCCTCACATCACTGATGTCTTACCTGATGCAGAAGCTATCCGTTCA 407
|||||||||| ||| ||||||||||||||||||||||||||||| ||||| || ||||||
Sbjct 370 CAACGATTCAGCATACCTCACATCACTGATGTCTTACCTGATGCTGAAGCCATTCGTTCA 429
Query 408 ACGTTTTGTCTCAAGATGAGGTCTCCGACGGAAGATTTTGTTGGTGGTTACCCTTCTGAT 467
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 430 ACGTTTTGTCTTAAGATGAGGTCTCCGACGGAAGATTTTGTTGGTGGTTACCCTTCTGAT 489
Query 468 GAAGAATGGCATGGATACATTAATAACAATGATAGAGTTCTTCTCAAGGTTATTAGATAC 527
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 490 GAAGAATGGCATGGATACATTAATAACAATGATAGAGTTCTTCTCAAGGTTATTAGTTAC 549
Query 528 TCCTCACCTACTTCTGCTGGAGCTGAGTGCATTGATCCTGACTGTTCTTGGATTGAGCAA 587
|||||||||||||||||||||||||||||| |||||| ||||||||||||| |||| |||
Sbjct 550 TCCTCACCTACTTCTGCTGGAGCTGAGTGCCTTGATCATGACTGTTCTTGGGTTGAACAA 609
Query 588 TGGATTCACCGTGCTGGTCCGAGGGAGAAGATATATTTCAGACCGGAACAAGTGAAGGCT 647
||||||||||||||||||||||||||||||||||| ||||| |||||| ||||||| |||
Sbjct 610 TGGATTCACCGTGCTGGTCCGAGGGAGAAGATATACTTCAGGCCGGAAGAAGTGAAAGCT 669
Query 648 GCGATTATCACTTGTGGTGGCCTTTGTCCTGGTCTTAATGATGTCATTAGACATATTGTC 707
|||||||||||||||||||||||||| |||||||| ||||||||||| ||||||||||||
Sbjct 670 GCGATTATCACTTGTGGTGGCCTTTGCCCTGGTCTCAATGATGTCATCAGACATATTGTC 729
Query 708 ATCACTCTTGAGATTTATGGTGTTAAGAACATTGTCGGGATTCCTTTTGGTTATCGAGGT 767
|| |||||||||||||||||||||||||||||||| ||||||||||| |||||||||||
Sbjct 730 ATTACTCTTGAGATTTATGGTGTTAAGAACATTGTGGGGATTCCTTTCGGTTATCGAGGC 789
Query 768 TTCTCTGATAAAGATCTAACTGAAATGCCGTTATCAAGGAAAGTGGTTCAGAATATTCAT 827
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 790 TTCTCTGATAAAGATCTAACTGAAATGCCGTTATCAAGGAAAGTGGTTCAGAATATTCAT 849
Query 828 CTATCTGGAGGAAGCTTGCTTGGAGTTTCACGTGGAGGCCCGAGTGTTAGCCAAATTGTC 887
||||||||||||| |||||||||||||||||||||||||||||||| || ||||||||
Sbjct 850 TTATCTGGAGGAAGTTTGCTTGGAGTTTCACGTGGAGGCCCGAGTGTGAGTGAAATTGTC 909
Query 888 GACAGCATGGAGGAGAGAGGAATCAACATGCTTTTCGTGCTCGGTGGAAACGGAACTCAT 947
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 910 GACAGCATGGAGGAGAGAGGAATCAACATGCTTTTCGTGCTCGGTGGAAACGGAACTCAT 969
Query 948 GCTGGCGCTGACGCTATACACAATGAGTGCCGCAAAAGAAAGATAAAGGTAGCTGTAGTT 1007
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 970 GCTGGCGCCAACGCTATACACAATGAGTGCCGCAAAAGAAAGATAAAGGTAGCTGTAGTT 1029
Query 1008 GGTGTGCCAAAAACCATTGACAATGATATTTTACATATGGACAAAACTTTTGGGTTTGAT 1067
||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1030 GGTGTGCCAAAAACCATCGACAATGATATTTTACATATGGATAAAACTTTTGGGTTTGAT 1089
Query 1068 ACTGCTGTTGAAGAAGCACAACGAGCTATAAACTCTGCCTACATCGAGGCACACAGTGCT 1127
||||||||||||||||| |||||||| || |||||||| ||||| |||||||| ||||||
Sbjct 1090 ACTGCTGTTGAAGAAGCTCAACGAGCAATTAACTCTGCTTACATTGAGGCACATAGTGCT 1149
Query 1128 TATCATGGCATTGGTGTTGTAAAACTGATGGGTCGTAACAGTGGTTTCATCGCGATGCAA 1187
|||||||||||||| ||||||||||||||||||||||||||||||||||| || ||||||
Sbjct 1150 TATCATGGCATTGGCGTTGTAAAACTGATGGGTCGTAACAGTGGTTTCATTGCTATGCAA 1209
Query 1188 GCCTCTCTAGCAAGTGGACAAGTTGACATCTGTTTGATTCCTGAGGTTCCCTTCAATCTT 1247
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1210 GCCTCTCTAGCAAGTGGACAAGTCGACATCTGTTTGATTCCTGAGGTTCCCTTCAATCTT 1269
Query 1248 CATGGGCCTAATGGTGTACTGAAGCATTTGAAGTACCTTATTGAAACAAAAGGCTCCGCT 1307
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||
Sbjct 1270 CATGGGCCTAATGGTGTATTGAAGCATTTGAAGTACCTTATTGAAACAAAAGGCTCTGCT 1329
Query 1308 GTGATCTGTGTAGCAGAAGGAGCTGGACAGAATTTTCTTGAGAAAACCAATGCCAAAGAT 1367
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1330 GTGATCTGTGTAGCAGAAGGAGCTGGACAGAATTTTCTTGAGAAAACCAATGCCAAAGAT 1389
Query 1368 GCATCTGGAAACGCAGTACTTGGTGATTTCGGTGTGTACATTCAACAAGAGACGAAGAAG 1427
|||||||||||||| ||||||||||||||||||||||| |||||||||||||| ||||||
Sbjct 1390 GCATCTGGAAACGCCGTACTTGGTGATTTCGGTGTGTATATTCAACAAGAGACTAAGAAG 1449
Query 1428 TATTTTAAAGAAATAAGTACTCCAATAGATGTGAAGTATATTGATCCAACATACATGATT 1487
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1450 TATTTCAAAGAAATAAGTACTCCAATAGATGTGAAGTATATTGATCCAACATACATGATT 1509
Query 1488 CGCGCTGTCCGTGCAAATGCCTCAGATGGTATCCTCTGTACCGTTCTTGGACAAAACGCA 1547
|||||||| |||||||||||||| |||||||||||||| ||||||||||||||||||||
Sbjct 1510 CGCGCTGTACGTGCAAATGCCTCGGATGGTATCCTCTGCACCGTTCTTGGACAAAACGCT 1569
Query 1548 GTTCATGGTGCGTTTGCTGGATACAGCGGAATCACGGTAGGCATAATCAACACTCACTAT 1607
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1570 GTTCATGGTGCGTTTGCTGGATACAGTGGAATCACGGTAGGCATAATCAACACTCACTAT 1629
Query 1608 GCTTATTTGCCAATCCCTGAGGTAATTGCATATCCAAAATCAGTCGATCCAAATAGTCGA 1667
|| |||||||||||| |||||||||||||||||||||||||||| ||||| |||||||||
Sbjct 1630 GCATATTTGCCAATCACTGAGGTAATTGCATATCCAAAATCAGTGGATCCTAATAGTCGA 1689
Query 1668 ATGTGGCATCGTTGCTTGACATCAACGGGTCAACCCGATTTCATCTAAAAA-ATCTTATT 1726
||||||||||||||||||||||||||||| ||||||||||||||||||||| || |||||
Sbjct 1690 ATGTGGCATCGTTGCTTGACATCAACGGGCCAACCCGATTTCATCTAAAAAGATATTATT 1749
Query 1727 ---CAATCACGAAACAAACTGAT-A-AAAA-TAAGCCTTGAAATGTATATACAGCAGCAT 1780
|||||||||||||||||||| | |||| |||||||||||||||||| |||| |||||
Sbjct 1750 ATTCAATCACGAAACAAACTGATGATAAAAATAAGCCTTGAAATGTATAGACAGTAGCAT 1809
Query 1781 TCTTGGTTCCTTATTATGATGTATCAAATCATAT 1814
|||||||||||| |||||||||||||||||||||
Sbjct 1810 TCTTGGTTCCTTGTTATGATGTATCAAATCATAT 1843
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 89758574460
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5