BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg481110
Length=1628
Score E
Sequences producing significant alignments: (Bits) Value
AT2G22490.2 | Symbols: CYCD2;1 | Cyclin D2;1 | chr2:9553803-955... 1934 0.0
> AT2G22490.2 | Symbols: CYCD2;1 | Cyclin D2;1 | chr2:9553803-9556145
REVERSE LENGTH=1715
Length=1715
Score = 1934 bits (1047), Expect = 0.0
Identities = 1325/1449 (91%), Gaps = 60/1449 (4%)
Strand=Plus/Plus
Query 216 CAAACCAAA-CCCATGGCCGAGAATCTTGCTTGTGGTGAAACCACCGAGTCATGGATCAT 274
||||||||| |||||||| ||||||||||||||||||||||||| |||||||||||||||
Sbjct 260 CAAACCAAACCCCATGGCTGAGAATCTTGCTTGTGGTGAAACCAGCGAGTCATGGATCAT 319
Query 275 TGACAACGACGCCGATGATATCAACTATGGCGGCGGATTTACGAACGAGATTGATTACAG 334
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 320 TGACAACGACGATGATGATATCAACTATGGCGGCGGATTTACGAACGAGATTGATTACAA 379
Query 335 TCATCAACTTTTTACTAAAGACGACAACTTTGGCGGCAACGGATCAATTCCGATGATGGG 394
||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 380 TCACCAACTTTTTGCTAAAGACGACAACTTTGGCGGCAACGGATCAATTCCGATGATGGG 439
Query 395 TTCTTCTTCTTCATCGTCCTTGAGTGAAGACAGAATCAGAGAGATGTTGGAGAGAGAGAT 454
||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||
Sbjct 440 ---TTCTTCTTCATCGTCCTTGAGTGAAGACAGAATCAAAGAGATGTTGGTGAGAGAGAT 496
Query 455 TGAGTTCTGCCCTGGAACTGATTATGTTAAGAGATTGCTTTCTGGTGATTTGGATTTGTC 514
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 497 TGAGTTTTGCCCTGGAACTGATTATGTTAAGAGATTGCTTTCTGGTGATTTGGATTTGTC 556
Query 515 TGTTAGAAGCCAAGCTCTGGATTGGATTTTAAAGGTTTGTGCTCATTACCATTTTGGACC 574
|||| ||| ||||||||| ||||||||| ||||||||||||||||||||||||||||||
Sbjct 557 TGTTCGAAACCAAGCTCTTGATTGGATTCTAAAGGTTTGTGCTCATTACCATTTTGGACA 616
Query 575 TCTGTGCATATGTCTATCCATGAACTACTTGGATCGGTTCTTAACGTCCTATGAATTGCC 634
|||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 617 TCTGTGCATATGCCTATCCATGAACTACTTGGATCGGTTCTTAACATCCTATGAATTGCC 676
Query 635 GAAAGACAAGGATTGGGCTGTTCAGTTGCTAGCTGTCTCTTGCTTATCATTAGCAGCCAA 694
|||||||||||||||||||| |||||| |||||||| |||||||||||||||||| ||||
Sbjct 677 GAAAGACAAGGATTGGGCTGCTCAGTTACTAGCTGTGTCTTGCTTATCATTAGCATCCAA 736
Query 695 AATGGAAGAAACTGATGTGCCTCAAATTGTTGATTTACAGGTGGAAGATCCCAAGTTTGT 754
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 737 AATGGAAGAAACTGATGTGCCTCACATTGTTGATTTACAGGTGGAAGATCCCAAGTTTGT 796
Query 755 TTTTGAGGCCAAAACAATAAAAAGGATGGAGCTTTTGGTTCTCAACACATTGAACTGGAG 814
|||||||||||||||||||||||||||||||||||||||| ||| ||| ||||| |||||
Sbjct 797 TTTTGAGGCCAAAACAATAAAAAGGATGGAGCTTTTGGTTGTCACCACTTTGAATTGGAG 856
Query 815 ATTGCAAGCTCTAACTCCATTCTCCTTCGTTGATTATTTCGTCGACAAGATTAGTGGTCA 874
|||||||||||||||||||||||||||| ||||||||||||| |||||||| ||||||||
Sbjct 857 ATTGCAAGCTCTAACTCCATTCTCCTTCATTGATTATTTCGTTGACAAGATCAGTGGTCA 916
Query 875 TGTGTCAGAGAATTTGATCTATAGATCGTCGCGATTCATCTTAAACACCACCAAAGCAAT 934
||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 917 CGTGTCGGAGAATTTGATCTATAGATCGTCAAGATTCATCTTAAACACCACCAAAGCAAT 976
Query 935 TGAATTCTCAGACTTCAGGCCTTCTGAGATAGCTGCAGCAGCAGCAGTATCTGTCTCCAT 994
|||||||| |||||||||||||||||||||||||||||| || ||||| ||||| |||||
Sbjct 977 TGAATTCTTAGACTTCAGGCCTTCTGAGATAGCTGCAGCTGCTGCAGTGTCTGTTTCCAT 1036
Query 995 TTCAGGAGAAACAGAATGCATTGATGACGAAAAGGCGA-TGTCTAATCTCCTATATGTAA 1053
||||||||||||||||||||||||||| |||||||| | |||||| |||| |||||||||
Sbjct 1037 TTCAGGAGAAACAGAATGCATTGATGAGGAAAAGGC-ACTGTCTAGTCTCATATATGTAA 1095
Query 1054 AACAGGAG-AGAG--TGAAGAGATGTTTGAATCTGATGAGAACTCTCACAGGGGAG-A-A 1108
||||| || |||| ||||||||||||||||||||||||||| |||||| |||||| | |
Sbjct 1096 AACAGCAGGAGAGGGTGAAGAGATGTTTGAATCTGATGAGAAGTCTCACTGGGGAGGAGA 1155
Query 1109 -TGTGTCGGG-AACTAGTTTATCGCAGGAGCAGCCGCGA-TTAGCAGTAAGAG-TGGTAC 1164
|||| |||| |||||||||||||||||||||| ||||| || || ||||||| || |||
Sbjct 1156 ATGTG-CGGGGAACTAGTTTATCGCAGGAGCAGGCGCGAGTT-GCGGTAAGAGCTG-TAC 1212
Query 1165 CGGCAAGTCCAATTGGAGTGTTGGAAGCAACATGTTTGAGCTATAAGAGTGAAGAGAGAA 1224
| ||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1213 CTGCAAGTCCAGTTGGAGTGTTGGAAGCAACATGTTTGAGCTATAGGAGTGAAGAGAGAA 1272
Query 1225 CAGTTGAGTCATGTACAAATTCCTCACAGAGTAGTCCAGACAACAACAACAATA------ 1278
|||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1273 CAGTTGAGTCATGTACAAATTCCTCACAGAGTAGTCCAGACAACAACAACAACAACAACA 1332
Query 1279 ---GCAACAAGAGGAGGAGAAAACAATGAGAGAGAATAAAAGAGTCATACATTTCTTTT- 1334
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1333 ACAGCAACAAGAGGAGGAGAAAACAATGAGAGAGAATAAAAGAGTCATACATTGCTTTTT 1392
Query 1335 ACAACTCAAATCCACAAGGACTCATGACATTTGAGGTTCTTAttt-ttttttt------- 1386
||||| |||| ||||||| |||||||||||||||||||||||||| |||||||
Sbjct 1393 ACAACCCAAAACCACAAGTACTCATGACATTTGAGGTTCTTATTTATTTTTTTGGTTTTT 1452
Query 1387 -----ctacagaaaatttctttt-ctctctttgatttctcattttcAATCTaaaaattgg 1440
||||| ||| |||||||| || |||||||||||||||||||||||| ||||||||
Sbjct 1453 TTTTTCTACATAAATTTTCTTTTTCTTTCTTTGATTTCTCATTTTCAATCTGAAAATTGG 1512
Query 1441 attggaa-atgagagttttgtgagaggggaaaaaagaaaataagagagagagagagagCT 1499
|||| || ||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1513 ATTG-AATATGAGAGTTTTGTGAGAAAGGAAAAAAGAAAATAAGAGAGAGAGAGAGAGCT 1571
Query 1500 CTTACATAAAGGCGGCAAAATTAATAAGTCATTATTGATGATGATGAGAGACATCCCTAG 1559
||| || |||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1572 CTTTGG-AA-GGCGGCAAAATTAATAAGTCATTATTGATGATGATGAGAGACATCCCT-G 1628
Query 1560 TTCATGTTCTTGCTCCAAGGGACtttttttttttttttttCTACAGAATGTCAGAGATAT 1619
||| | | |||||||||||||||||||||| ||||| ||||||||||||||
Sbjct 1629 TTC-T-T----GCTCCAAGGGACTTTTTTTTTT-------CTACATAATGTCAGAGATAT 1675
Query 1620 AATTAAAAA 1628
|||||||||
Sbjct 1676 AATTAAAAA 1684
Score = 331 bits (179), Expect = 1e-89
Identities = 207/219 (95%), Gaps = 8/219 (4%)
Strand=Plus/Plus
Query 1 GGAGTGGTCGCTCCCCTCTCTACCCT-AAACACACTCACCCACTTTCCTCTGTATAAACC 59
||||||||| |||||||||||||||| |||||||||||||||||||||||||||| ||
Sbjct 5 GGAGTGGTCTCTCCCCTCTCTACCCTAAAACACACTCACCCACTTTCCTCTGTAT-AA-G 62
Query 60 Cctctctctcctctctcttct-ctcCTGCCATGAAAATCGCAGTTCCTCGAGACAAAACC 118
||||||||||||||||||||| || |||||||||||||||||||||||| ||||||||||
Sbjct 63 CCTCTCTCTCCTCTCTCTTCTCCT-CTGCCATGAAAATCGCAGTTCCTCAAGACAAAACC 121
Query 119 TCCTCAGAAATCTCCCATCTCTGATGACTTTTGCTTCCTTAGTTTTCACTTTACT-GTCC 177
|||||||||||||||||||| ||||||||||||||||||||||||||||||| || ||||
Sbjct 122 TCCTCAGAAATCTCCCATCTTTGATGACTTTTGCTTCCTTAGTTTTCACTTT-CTTGTCC 180
Query 178 GAACGCTCTCAAAAACTTTGAGAC-ACCCCAATAAACGA 215
|||||||||||||||||||||||| ||||||||||||||
Sbjct 181 GAACGCTCTCAAAAACTTTGAGACCACCCCAATAAACGA 219
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 80421273090
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5