BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg481111
Length=1413
Score E
Sequences producing significant alignments: (Bits) Value
AT2G22500.1 | Symbols: UCP5, ATPUMP5, DIC1 | uncoupling protein... 1967 0.0
AT4G24570.1 | Symbols: DIC2 | dicarboxylate carrier 2 | chr4:12... 219 8e-56
> AT2G22500.1 | Symbols: UCP5, ATPUMP5, DIC1 | uncoupling protein
5 | chr2:9563224-9564751 REVERSE LENGTH=1528
Length=1528
Score = 1967 bits (1065), Expect = 0.0
Identities = 1317/1432 (92%), Gaps = 43/1432 (3%)
Strand=Plus/Plus
Query 2 TTATGTCTCAAAGACCTCTGATTCCTCATTCTTCTTCTATAGCTTTTGGTCTCCATTCTC 61
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 64 TTATGTCTCAAAGATCTCTGATTCCTCATTCTTCTTCTATAGCTTTTGGTCTCCATTCTC 123
Query 62 ATCTCTTAATCTCCAGTGAGATCAGCTCTAATTCTAACTGGTCTCTCTAAGaaaaataaa 121
|||||||||||||||||||||||||||| ||||||||||||||||||| |||||||
Sbjct 124 ATCTCTTAATCTCCAGTGAGATCAGCTCCAATTCTAACTGGTCTCTCT-----AAATAAA 178
Query 122 cacaacccaaaaataaaaaTCTAACCttttt--tttttaactttctattttcccgg--aa 177
| || || ||||||||||| ||||||||| |||| | ||| |||||||||| ||
Sbjct 179 -A-AA--CAGAAATAAAAATCCAACCTTTTTCAATTTT--CGTTCAATTTTCCCGGAAAA 232
Query 178 aaaagggat-c--tt--tttttcgattt-t-cga-tttc---TCAAAATGGGTCTCAAGG 226
||||| ||| | || ||||||||||| | | | | | ||||||||||||| ||||
Sbjct 233 AAAAGCGATCCTTTTGATTTTTCGATTTCTCCAAGTAACAATTCAAAATGGGTCTAAAGG 292
Query 227 GTTTTGCTGAAGGAGGAATCGCTTCAATTGTTGCGGGTTGTTCGACCCACCCGCTTGATC 286
||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||
Sbjct 293 GTTTTGCTGAAGGAGGAATAGCTTCGATTGTTGCGGGTTGTTCGACCCACCCGCTTGATC 352
Query 287 TAATCAAGGTCCGAATGCAACTTCAAGGCGAATCAGCTCCGATTCAGACCAATCTCCGAC 346
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 353 TAATCAAGGTCCGAATGCAACTTCAAGGCGAATCAGCTCCGATTCAAACCAATCTCCGAC 412
Query 347 CAGCTCTTGCCTTTCAAACTTCGACCACCGTCAACGCGCCTCCTCTACGCGTTGGTGTAA 406
|||||||||| ||||| |||||||||||||||||||||||||||||||| ||||||||||
Sbjct 413 CAGCTCTTGCTTTTCAGACTTCGACCACCGTCAACGCGCCTCCTCTACGTGTTGGTGTAA 472
Query 407 TCGGAGTCGGATCTCGTTTAATCCGTGAAGAAGGCTTGCGTGCTCTGTTTTCCGGCGTCT 466
|||||||||||||||||||||| | ||||||||| ||||||||||||||||||||||||
Sbjct 473 TCGGAGTCGGATCTCGTTTAATAAGAGAAGAAGGCATGCGTGCTCTGTTTTCCGGCGTCT 532
Query 467 CCGCCACCGTTCTCCGTCAAACTCTGTATTCAACGACTCGTATGGGTTTATATGATATCC 526
||||||||||||| |||||||||||||||||||||||||||||||||||||| || |||
Sbjct 533 CCGCCACCGTTCTTCGTCAAACTCTGTATTCAACGACTCGTATGGGTTTATACGACATCA 592
Query 527 TCAAAGGAAAATGGACCGACCCGGAAACAAAAACGATGCCTTTAACaaaaaaaaTCGGTG 586
|||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 593 TCAAAGGAGAATGGACCGACCCGGAAACAAAAACGATGCCTTTAATGAAAAAAATCGGTG 652
Query 587 CCGGAGCCATCGCCGGAGCAATCGGAGCCGCCGTTGGGAATCCTGCTGACGTGGCGATGG 646
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 653 CCGGAGCCATCGCCGGAGCAATCGGAGCCGCCGTTGGGAATCCTGCTGACGTGGCGATGG 712
Query 647 TTAGGATGCAAGCCGATGGTCGTTTACCGTTGGCTGAGAGAAGAAACTATAAAAGCGTTT 706
| |||||||||||||||||||||||||||||| |||| ||||||||||| ||||||||||
Sbjct 713 TGAGGATGCAAGCCGATGGTCGTTTACCGTTGACTGATAGAAGAAACTACAAAAGCGTTT 772
Query 707 TAGACGCGATCACGCAAATGATTCGCGGTGAAGGCGTTACGTCTTTGTGGAGAGGATCGT 766
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 773 TAGACGCGATCACGCAAATGATTCGCGGTGAAGGCGTTACGTCGTTGTGGAGAGGATCGT 832
Query 767 CTTTGACGATAAACAGAGCAATGCTTGTGACGTCATCGCAGTTAGCTTCGTATGATTCTG 826
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 833 CTTTGACGATAAACAGAGCAATGCTTGTGACGTCATCGCAGTTGGCTTCGTATGATTCTG 892
Query 827 TTAAAGAGACGATTTTGGAGAAAGGGTTGTTGGAAGATGGGCTTGGGACTCATGTTTTGG 886
|||||||||||||||||||||||||||||||| |||||||||||||||||||||| | ||
Sbjct 893 TTAAAGAGACGATTTTGGAGAAAGGGTTGTTGAAAGATGGGCTTGGGACTCATGTGTCGG 952
Query 887 CGAGTTTCGCTGCTGGGTTTGTAGCGTCCGTTGCTTCG-AATCCGGTTGATGTGATTAAG 945
|||||||||| || |||||||| ||| |||||| | ||||| |||||||||||||||
Sbjct 953 CGAGTTTCGCGGCGGGGTTTGTTGCGAGCGTTGCGA-GTAATCCTGTTGATGTGATTAAG 1011
Query 946 ACGAGAGTGATGAATATGAAGGTGGTGGCTGGAGTTGCACCGCCGTATAAAGGAGCGGTA 1005
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1012 ACGAGAGTGATGAATATGAAGGTGGTGGCTGGAGTTGCTCCGCCGTATAAAGGAGCGGTT 1071
Query 1006 GATTGTGCTTTGAAAACGGTGAAAGCGGAAGGGATTATGGCTTTATATAAAGGATTTGTG 1065
||||||||||||||||||||||||||||||||||||||| |||| |||||||| ||| |
Sbjct 1072 GATTGTGCTTTGAAAACGGTGAAAGCGGAAGGGATTATGTCTTTGTATAAAGGTTTTATC 1131
Query 1066 CCGACGGTTTCGAGACAAGCACCGTTCACGGTGGTTTTGTTTGTTACGCTTGAACAAGTT 1125
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1132 CCGACGGTTTCGAGACAAGCACCGTTCACGGTGGTTTTGTTTGTTACGCTTGAACAAGTT 1191
Query 1126 C-GCAAGGTGTTTAAGGACTATGACTTTTGAATAA--CAAGAGTTGAATTATTGAAGAAG 1182
| ||| |||| ||||||||||||||||||| || ||||||||||||||| | ||||
Sbjct 1192 AAG-AAGTTGTTCAAGGACTATGACTTTTGAAAAAAACAAGAGTTGAATTAT-GTTGAAG 1249
Query 1183 ACGATGATGAATGATGTTGGCGACAATAAGAttttttttttcttttggttataattttca 1242
| | ||||||||||| ||||||||||||| || | ||||| || ||||||||||||||
Sbjct 1250 A--A-GATGAATGATGGTGGCGACAATAAGCTTCTCTTTTT-TTCTGGTTATAATTTTCT 1305
Query 1243 tttgattaatcgagtagttttaaattgttttccatttgTTCGAATAGATCTATGATATGA 1302
|||||||| | ||||||||||||||||||| ||||||||| |||||||||||||||||||
Sbjct 1306 TTTGATTATTTGAGTAGTTTTAAATTGTTTCCCATTTGTTGGAATAGATCTATGATATGA 1365
Query 1303 -AATTTCTTCTCATGACTTGAGAAGAGAGAACGAAAGAAACAGTTCATTTGATTCATTAT 1361
|||| ||||||||| ||||||| |||| ||||||||||||||||||||||||||||
Sbjct 1366 TAATT-CTTCTCATG----GAGAAGAAAGAAAGAAAGAAACAGTTCATTTGATTCATTAT 1420
Query 1362 TCAAGGCAGTGAAATATTTAGATTCGTTTATGTTAATTTTGAACTATGTAAT 1413
|||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1421 TCAAGGCAGTGAAATACTTAGATTCGTTTATGTTAATTTTGAACTATGTAAT 1472
> AT4G24570.1 | Symbols: DIC2 | dicarboxylate carrier 2 | chr4:12686459-12687650
FORWARD LENGTH=1192
Length=1192
Score = 219 bits (118), Expect = 8e-56
Identities = 310/401 (77%), Gaps = 20/401 (5%)
Strand=Plus/Plus
Query 580 ATCGGTGCCGGAGCCA-TCGCCGGAGCAATCGGAGCCGCCGTTGGGAATCCTGCTGACGT 638
|||||||| || || | |||| || | |||||||||||||||||| ||||| ||||||||
Sbjct 475 ATCGGTGCAGG-GCTAGTCGCTGGTGGAATCGGAGCCGCCGTTGGAAATCCAGCTGACGT 533
Query 639 GGCGATGGTTAGGATGCAAGCCGATGGTCGTTTACCGTTGGCTG-AGA-GAAGAAACTAT 696
||||||||||||||||||||| || || | ||||| || || | | | | | |||||
Sbjct 534 GGCGATGGTTAGGATGCAAGCTGACGGGAGGTTACCTTTAGC-GCA-ACGTCGTAACTAC 591
Query 697 AAAAGCGTTTTAGACGCGATCACGCA-AATGATT-CGCGGTGAAGGCGTTACG-TCTTTG 753
| || |||||| |||| | | ||| || | || |||||||| ||| | |||
Sbjct 592 GCCGGAGTAGGAGACGCAATCA-GGAGCATGGTTAAG-GGAGAAGGCGTAACGAGC-TTG 648
Query 754 TGGAGAGGATCGTCTTTGACGATAAACAGAGCAATGCTTGTGACGTCATCGCAGTTAGCT 813
||| |||| ||| | |||||||| ||| |||| ||| |||||||| | | ||| ||||
Sbjct 649 TGGCGAGGCTCGGCGTTGACGATTAACCGAGCGATGATTGTGACGGCGGCTCAGCTAGCG 708
Query 814 TCGTATGATTCTGTT-AAAG-AGACGATTTTGGAGAAAGGGT-TGTTGGAA-GATGGGCT 869
|| || || || ||| || | || ||| |||||| || ||| || | ||| ||||||||
Sbjct 709 TCTTACGA-TCAGTTCAAGGAAG-GGATATTGGAG-AATGGTGTGAT-GAATGATGGGCT 764
Query 870 TGGGACTCATGTTTTGGCGAGTTTCGCTGCTGGGTTTGTAGCGTCCGTTGCTTCGAATCC 929
|||||||| || | |||||||| || || |||||||| || || ||||| || |||||
Sbjct 765 AGGGACTCACGTGGTAGCGAGTTTTGCGGCGGGGTTTGTTGCTTCGGTTGCGTCTAATCC 824
Query 930 GGTTGATGTGATTAAGACGAGAGTGATGAATATGAAGGTGG 970
||| |||||||| ||||||||||||||||||||||||||||
Sbjct 825 GGTGGATGTGATAAAGACGAGAGTGATGAATATGAAGGTGG 865
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 69628155915
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5