BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg481118
Length=1479
Score E
Sequences producing significant alignments: (Bits) Value
AT2G22590.1 | Symbols: | UDP-Glycosyltransferase superfamily p... 1199 0.0
> AT2G22590.1 | Symbols: | UDP-Glycosyltransferase superfamily
protein | chr2:9592996-9594535 FORWARD LENGTH=1540
Length=1540
Score = 1199 bits (649), Expect = 0.0
Identities = 772/831 (93%), Gaps = 9/831 (1%)
Strand=Plus/Plus
Query 650 TATGAAGCAGAGTGGTTAGGACTTATACAAGATCTTCACCGGAAACCGGTTATACCGGTG 709
|||||||| |||||||||||||||| |||||| ||||||||||||||||||||||||||
Sbjct 710 TATGAAGCGGAGTGGTTAGGACTTACACAAGAACTTCACCGGAAACCGGTTATACCGGTC 769
Query 710 GGAGTTTTACCTCCAAAACCGGAAGAAAAGTTTGAAGATACCGACACGTGGCTGACTGTT 769
|||||||| |||||||||||||| |||||||||||||||||||||||||||||| |||||
Sbjct 770 GGAGTTTTGCCTCCAAAACCGGACGAAAAGTTTGAAGATACCGACACGTGGCTGTCTGTT 829
Query 770 AAAAAGTGGTTGGACTTACGGAAAAGTAAGTCCGTTGTTTACGTAGCTTTTGGTTCAGAA 829
||||| |||||||||| |||||||||||||||| |||| |||||||||||||||||||||
Sbjct 830 AAAAAATGGTTGGACTCACGGAAAAGTAAGTCCATTGTCTACGTAGCTTTTGGTTCAGAA 889
Query 830 GCTAAACCGAGTCAAACGGAGCTGAATGAGATAGCTCTCGGTTTAGAGCTTTCCGGTTTA 889
||||||||||||||||||||||| |||||||| |||||||||||||||||||| ||||||
Sbjct 890 GCTAAACCGAGTCAAACGGAGCTAAATGAGATCGCTCTCGGTTTAGAGCTTTCTGGTTTA 949
Query 890 CCTTTCTTCTGGGTGTTAAAGAATCGGCGTGGTCCGTGGGATACCGAACCGGTTGAGCTT 949
|||||||| ||||||||||||| ||| |||||||||||||||||||||||||| ||||||
Sbjct 950 CCTTTCTTTTGGGTGTTAAAGACTCGTCGTGGTCCGTGGGATACCGAACCGGTCGAGCTT 1009
Query 950 CTAGAAGGATTCGAGGAGCGTACAGCGGATAGAGGTATGGTGTGGAGAGGTTGGGTTGAG 1009
| ||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1010 CCGGAAGGATTCGAAGAGCGTACAGCGGATAGAGGGATGGTGTGGAGAGGTTGGGTTGAG 1069
Query 1010 CAATTGAGAACATTGAGCCATGACTCGATCGGTTTGGTTCTAACTCATCCCGGTTGGGGA 1069
|||||| | |||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1070 CAATTGCGTACATTGAGCCATGACTCGATCGGTTTGGTTCTGACTCATCCCGGTTGGGGA 1129
Query 1070 ACGATAATTGAAGCTGTCCGGTTTGCTAAACCGATGGCAATGCTGGTTTTTGTGTACGAC 1129
||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1130 ACGATAATTGAAGCTATCCGGTTTGCTAAACCGATGGCAATGCTGGTTTTTGTGTATGAC 1189
Query 1130 CAAGGATTAAATGCGAGAGTAATCGAAGAGAAGAAAATTGGTTATATGATCCCTCGGGAT 1189
|||||||| ||||||||||| || ||||||||||||||||| |||||||||||||| ||
Sbjct 1190 CAAGGATTGAATGCGAGAGTCATTGAAGAGAAGAAAATTGGGTATATGATCCCTCGAGAC 1249
Query 1190 GAAACAGAAGGTTTCTTTACTAAAGAAAGTGTTGCGAAATCACTAAGATTGGTAATGGAG 1249
|| ||||||||||||||||||||||||||||||||||| || |||||||||||||||| |
Sbjct 1250 GAGACAGAAGGTTTCTTTACTAAAGAAAGTGTTGCGAATTCGCTAAGATTGGTAATGGTG 1309
Query 1250 GAAGACGAAGGAAAGGTTTATAGAGAGAATGTGTAGGAGATGAAAGGAGTGTTTGGAGAC 1309
||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1310 GAAGAAGAAGGAAAGGTTTATAGAGAGAATGTGAAGGAGATGAAAGGAGTGTTTGGAGAT 1369
Query 1310 ATGGATAGACAAGATCATTATGTGGATTCATTCTTGGATTATCTTGTTGCTAATCGTTAA 1369
|||||||||||||||| ||||||||||||||||||||| ||||||||| |||||||||||
Sbjct 1370 ATGGATAGACAAGATCGTTATGTGGATTCATTCTTGGAATATCTTGTTACTAATCGTTAA 1429
Query 1370 GTTTGAGCATGGAGTCTTGATCCAATGG-CGGGTTAATTGAATGAATTTGATCAAGTGTT 1428
|||||| | ||||||||||||| ||| |||||||| |||| |||||||||||||
Sbjct 1430 CTTTGAG--T-----CTTGATCCAATGGTCGG-TTAATTGAGTGAAGTTGATCAAGTGTT 1481
Query 1429 GCAACGATGATCAATGTATAATATTATGATGTTTTGGAATGGTCAAGTTTT 1479
|||| |||||||| |||||||| ||||||| ||||||||||||||||||||
Sbjct 1482 GCAAGGATGATCATTGTATAATGTTATGATATTTTGGAATGGTCAAGTTTT 1532
Score = 435 bits (235), Expect = 8e-121
Identities = 257/268 (96%), Gaps = 0/268 (0%)
Strand=Plus/Plus
Query 200 TCCACTCCACGTAACATCGATCGTCTCCTCCCACGGTTGCCGGAAAATCTCTCCTCCATC 259
|||||||||||||||||||| ||||||||||||||||| |||||||||||||||||| ||
Sbjct 158 TCCACTCCACGTAACATCGACCGTCTCCTCCCACGGTTACCGGAAAATCTCTCCTCCGTC 217
Query 260 ATTAACTTCGTCAAGCTCCCACTTCCCGTCGGCGACAATAAACTCCCGGAAGACGGTGAA 319
||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||
Sbjct 218 ATTAACTTCGTCAAGCTATCACTTCCCGTCGGCGACAACAAACTCCCGGAAGACGGTGAA 277
Query 320 GCTACCACCGACGTGCCTTTCGAACTCATACCTTACTTAAAAATCGCTTTCAACGGGTTA 379
|||||||| ||||| |||||||||||||||||||||||||||||||||| | ||||||||
Sbjct 278 GCTACCACAGACGTCCCTTTCGAACTCATACCTTACTTAAAAATCGCTTACGACGGGTTA 337
Query 380 AAAGTTCCGGTGACGGAGTTTCTTGAATCTTCGAAACCCGATTGGGTTCTTCAAGATTTC 439
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 338 AAAGTTCCGGTGACGGAGTTTCTTGAATCTTCGAAACCCGATTGGGTTCTTCAAGATTTC 397
Query 440 GCGGCGTTTTGGCTTCCTCCAATCTCTC 467
|||| |||||||||||||||||||||||
Sbjct 398 GCGGGGTTTTGGCTTCCTCCAATCTCTC 425
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 72941391885
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5