BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg481119
Length=1902
Score E
Sequences producing significant alignments: (Bits) Value
AT2G22600.1 | Symbols: | RNA-binding KH domain-containing prot... 2680 0.0
> AT2G22600.1 | Symbols: | RNA-binding KH domain-containing protein
| chr2:9596617-9599050 FORWARD LENGTH=1899
Length=1899
Score = 2680 bits (1451), Expect = 0.0
Identities = 1767/1916 (92%), Gaps = 35/1916 (2%)
Strand=Plus/Plus
Query 1 ATGAGCAACCGCCGTGGAGTAACAACCGCCGTGTCGAAACGGCGTCCGGTGATTCACGTG 60
|||| ||||||||||||||||||||||||||| ||||| || ||||| ||||||||||||
Sbjct 1 ATGAACAACCGCCGTGGAGTAACAACCGCCGTATCGAAGCGTCGTCCAGTGATTCACGTG 60
Query 61 TTACCAGACGAAACAGCGATACGAGTAGTCTGCCACGCGTCAGTAATCGGCGGTATAATC 120
||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 61 TTACCAGACGAGACAGCGATACGAGTAGTCTGCCACGCGTCAGTAATCGGTGGTATAATC 120
Query 121 GGTTCAAATGGTTACGTTGTTTCCAAACTCCGTCGTGAAACCGGTACAAAAATCCATTGC 180
|||||||| |||||||||||||| |||||||| |||||||||||||| ||||||||||||
Sbjct 121 GGTTCAAACGGTTACGTTGTTTCAAAACTCCGGCGTGAAACCGGTACTAAAATCCATTGC 180
Query 181 GAGTCTCCGGTTAACGGCTCCGATCACTGGGTTGTCTTCATCGTTGGTTCAACCGCTGTT 240
|||||||| |||||||||||||| ||||||||||| ||||||||||||||||||||||||
Sbjct 181 GAGTCTCCAGTTAACGGCTCCGACCACTGGGTTGTGTTCATCGTTGGTTCAACCGCTGTT 240
Query 241 AACAAAAGTGTTCTATTGACTGATAGAGTCGGAGATTTCTCCGGCGGTGAACACGAAGAT 300
||| ||||| ||||||||||||||||||||||||| |||||||||||||| |||||||||
Sbjct 241 AACCAAAGTATTCTATTGACTGATAGAGTCGGAGAATTCTCCGGCGGTGAGCACGAAGAT 300
Query 301 TGGGTGACTTGTGATGTTTCCGCAGCTCAGACGGCGTTGATTAGGGTTTTGGAGAGATCA 360
|||||||| ||||| || ||||| ||||||||||||||||||||||||||||| ||||||
Sbjct 301 TGGGTGACGTGTGAAGTGTCCGCCGCTCAGACGGCGTTGATTAGGGTTTTGGAAAGATCA 360
Query 361 TGGGTTGTTTTAGCGGCGAAGGATGGCGGCGGAGTTGTTGATGGTGAGGATGAAGAAGCT 420
|||||||||||||| ||||| |||||||||||||||||||||||||| ||||||||||||
Sbjct 361 TGGGTTGTTTTAGCCGCGAAAGATGGCGGCGGAGTTGTTGATGGTGAAGATGAAGAAGCT 420
Query 421 TATTGTGGGATTTTGGCTGATCGGAATCAGATTGGTGCTGTTTTGGGTTTGGGTGGGAAG 480
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 TATTGTGGGATTTTGGCTGATCGGAATCAGATTGGTGCTGTTTTGGGTTTGGGTGGGAAA 480
Query 481 AATGTGGAGTGGATGCGGAGAAGTTCTGGTGCCATGATTAGGGTTTTGCCTCCTCCGATT 540
||||| |||||||||||||||| ||| |||||||||||||||||||||||||||||||||
Sbjct 481 AATGTTGAGTGGATGCGGAGAAATTCCGGTGCCATGATTAGGGTTTTGCCTCCTCCGATT 540
Query 541 TGCGGCACTAACACTGATGAACTCATTCAGGTTACTGGCGATGTCTTGGCTGTGAAGAAG 600
||||||||||| | |||||||||||||||| ||||||| ||||| |||||||||||||||
Sbjct 541 TGCGGCACTAAGAATGATGAACTCATTCAGATTACTGGTGATGTTTTGGCTGTGAAGAAG 600
Query 601 GCACTAGTTATGGTATCGACTTGTATTCAAGATAATCCACCTGTCAACGGGTATCCACAG 660
||||||||||||||||||| || ||||||| ||||| ||||| |||| |||||||||| |
Sbjct 601 GCACTAGTTATGGTATCGAGTTATATTCAAAATAATGCACCTCTCAATGGGTATCCACCG 660
Query 661 CCGCTTTGCATCAAAGCTTACGAGTC---ATCTACTGATGGGAACTCAGAGGATCCACAT 717
|||||| ||||||||| ||| ||||| ||| |||||||||||||||||||||||||||
Sbjct 661 CCGCTTAGCATCAAAGGTTATGAGTCATTATCAACTGATGGGAACTCAGAGGATCCACAT 720
Query 718 TCTGAGTTTTTTCCAAACCTGCG---TTCTTCGGTGCCTAATGCTTCAG-ATTCTGCTT- 772
||||||||||| ||||| |||| ||||||| || | |||||| ||| | | || ||
Sbjct 721 TCTGAGTTTTTCCCAAATTTGCGTTCTTCTTCGTTGTCAAATGCTACAGAAAT-TG-TTG 778
Query 773 CGTCGAATAGACATTTACCAGCGGTGTATGATGAAGGAAATGGTACAGAACGAAAAGTTG 832
| || |||||||||||| | | |||||||| |||||| ||||||||||||||||||
Sbjct 779 CATCCAATAGACATTTA-C--C---GTATGATGGTGGAAATAGTACAGAACGAAAAGTTG 832
Query 833 TGTTCAAGATAATCTTCACAAGTGTTGTAGCTGGAGGCATTATTGGGAAACAAGGAACAA 892
|||||||||||||||| || ||||||||||||||||| |||||||||||||||||||| |
Sbjct 833 TGTTCAAGATAATCTTTACTAGTGTTGTAGCTGGAGGTATTATTGGGAAACAAGGAACTA 892
Query 893 TTATCAGAGCTCTGCAGAATGAAACAGGTGCTTCTATTTC-GATTGGAGCTCCATTGAAA 951
|||| ||||||||||||||||||||||||||||||||||| | |||||||||||||||||
Sbjct 893 TTATTAGAGCTCTGCAGAATGAAACAGGTGCTTCTATTTCTG-TTGGAGCTCCATTGAAA 951
Query 952 GTATCCGGTGAGCGAGTTGTTACTATTTCTGCACGTGAGAACCTCGAGTCACGGTACTCT 1011
||||| ||||| |||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 952 GTATCTGGTGAACGAGTTGTTACTGTTTCTGCACGTGAGAACCTCGAGTCACGGTACTCT 1011
Query 1012 CATGCACAAAATGCCCTGGCTCTTGTCTTTGCAAGATCTGTTGAGATTGATGTTGAGAAA 1071
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1012 CATGCACAAAATGCTCTGGCTCTTGTCTTTGCAAGATCTGTTGAGATTGATGTTGAGAAA 1071
Query 1072 GGTCTGCGTCCGGGATTGCACAATGGTGCTGTAGTGAAAACTAAGCTATTGGTACCATCG 1131
||||||||||||||||||||||||||||| |||||||||||||| | |||||||||||
Sbjct 1072 GGTCTGCGTCCGGGATTGCACAATGGTGCCATAGTGAAAACTAAGTTGTTGGTACCATCA 1131
Query 1132 CAATTTGCTAATAGCTT-AGTTGGAAACGGAAACAGAGAAGCAATCATAGCAACCGGTGC 1190
|| |||||||||||||| | ||||||||||||||||||||||||||||||||| |||||
Sbjct 1132 CATTTTGCTAATAGCTTCA-ATGGAAACGGAAACAGAGAAGCAATCATAGCAACTGGTGC 1190
Query 1191 TGATGTACACATTCCAGTAGGCAACCAGATTTTAGAGTGGATCTCAGAAAATGAAGTGGT 1250
||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1191 TGATGTACACATTTCAGTAGGCAACCAGGTTTTAGAGTGGATCTCAGAAAATGAAGTGGT 1250
Query 1251 GATTGAGATTAAGGGAGAGTATAGTCATGTACAGAAGGCCTTGACTCATGTTTCATCTAA 1310
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1251 GATTGAGATTAAGGGAGAGTATAGTCATGTACAGAAGGCCTTGACTCATGTTTCGTCTAA 1310
Query 1311 ATTACGGGAAAACCTATTGCCAAAGAAGGTCCTCGGAGAAATGAGAGCTAGAGTTAGTAA 1370
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1311 ATTACGGGAAAATCTATTGCCAAAGAAGGTCCTCGGAGAAATGAGAGCTAGAGTTAGTAA 1370
Query 1371 TCCATATGAAAGTGCAGGA--AC-AAGCCAGATTTATAATCTGCAACAATCACAACAAAA 1427
||||||||||||||||||| | ||||||||||||||||||||||| |||||||||| |
Sbjct 1371 TCCATATGAAAGTGCAGGAGGAAGAAGCCAGATTTATAATCTGCAACCATCACAACAAGA 1430
Query 1428 CGCAAGCAGAGGTGATTCTCTCTCGGTATCAGATGGTGAACAAAACTTTAAGATGGTCAG 1487
|||||||| |||||||||||||||||||||| || || || | |||| |||||||| ||
Sbjct 1431 TGCAAGCAGGGGTGATTCTCTCTCGGTATCAGCTGCTGTACCAGACTTGAAGATGGTTAG 1490
Query 1488 AAGCGGTGCAGAAGTAATGAAATCGAATTCTGTAATGCACACCGAGGTCCTTAAAGAGGT 1547
|||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1491 AAGCGGTGCAGAAGTATTGAAATCAAATTCTGTAATGCACACCGAGGTCCTTAAAGAGGT 1550
Query 1548 GGATGAACTCAAAGGCTTTACACTTCCACAAAGTTTGCTGGAGGATGACTTGACACA-GG 1606
|||||||||||| | |||||||||||||||||||||||||||||| ||||||||||| ||
Sbjct 1551 GGATGAACTCAACGACTTTACACTTCCACAAAGTTTGCTGGAGGAAGACTTGACACAAGG 1610
Query 1607 AAATGAAACAGCTTCAGATGTCTAGGAATGGAGACGTCTCTTCTTTACCACAACGCAGAG 1666
|| ||||||| ||||| |||||||| ||||||||||||||||||||||||| ||| | ||
Sbjct 1611 AA-TGAAACAACTTCAAATGTCTAGCAATGGAGACGTCTCTTCTTTACCACCACG-A-AG 1667
Query 1667 GTAAAGGTGTATATGTGAGAAAAATCACATTGGAGTTAACCGTCGAGAAAGATGCTCTTG 1726
||||||||||| |||||||||||| || ||||||||| | || ||||||||||||||||
Sbjct 1668 -TAAAGGTGTATCTGTGAGAAAAATTACCTTGGAGTTAGCAGTTGAGAAAGATGCTCTTG 1726
Query 1727 GTTCACTCTATGGCAGAGATGGCACCGGTGTGGATAATCTACGACAGATTTCAGGAGCCG 1786
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1727 GTTCACTCTATGGCAGAGATGGCACCGGTGTGGATAATCTACAACAGATTTCAGGAGCCA 1786
Query 1787 GA-GTGGATGTGAAGGATCCTACAGGAATTGAAGCGACGGTCTTAATAATCTCCGGGAAT 1845
| ||||||||||||||||||||||||| |||||| || |||||||| ||| ||||||
Sbjct 1787 -ATGTGGATGTGAAGGATCCTACAGGAACTGAAGCTACAGTCTTAATC-TCT--GGGAAT 1842
Query 1846 CCTGAGCAAACCCGCACAGCGATGTCTTTGATCGAGTCAATCCTTGA-TGATCAAT 1900
||||||||| ||||||||||||||||||||||||||||||||||| | ||||||||
Sbjct 1843 CCTGAGCAAGCCCGCACAGCGATGTCTTTGATCGAGTCAATCCTT-ACTGATCAAT 1897
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 94176222420
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5