BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg481121 Length=2358 Score E Sequences producing significant alignments: (Bits) Value AT2G22620.1 | Symbols: | Rhamnogalacturonate lyase family prot... 3443 0.0 > AT2G22620.1 | Symbols: | Rhamnogalacturonate lyase family protein | chr2:9604772-9610595 REVERSE LENGTH=2444 Length=2444 Score = 3443 bits (1864), Expect = 0.0 Identities = 2123/2246 (95%), Gaps = 26/2246 (1%) Strand=Plus/Plus Query 118 aagagagagaTTACCTTCTTCATAGGAAAAGATTTCTTTCTTCTTCTGCATTCCTCAAAT 177 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 164 AAGAGAGAGATTACCTTCTTCATAGGAAAAGATTTCTTTCTTCTTCTGCATTCCCCAAAT 223 Query 178 TTTATCTTACCAAGAAACCCAAAACACAAGAAAATCTTAAAGTGAATTGTGGTGGAGATG 237 |||||||| ||||||||||||| ||| ||||||||||||||||||||||||||||||||| Sbjct 224 TTTATCTTCCCAAGAAACCCAACACAGAAGAAAATCTTAAAGTGAATTGTGGTGGAGATG 283 Query 238 AAAGTTGGAGCTCCGGCGAA-TAAGCCGGGTCGGATCATTGTGCAAGttcttcttctaca 296 ||||||||||||||||| || ||||||||||||||||||||| |||||| |||||||||| Sbjct 284 AAAGTTGGAGCTCCGGC-AAGTAAGCCGGGTCGGATCATTGTTCAAGTTTTTCTTCTACA 342 Query 297 tcttcttcttcttcttcttcttcttcAAAGTGTTCATTCTCAGAGATCACAAAACAAACT 356 ||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 343 ---------ACTTCTTCTTCTTCTTCAAAGTGTTCATTCACAGAGATCACAAAACAAACT 393 Query 357 TAACATCACAAAGCCTGGACAAAACATACCAGCCTTAACAGTTCAGCTAAGGAGAGTTGG 416 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 394 TAACATCACAAAGCCTGGACAAAACATACCAGCCTTAACAGTTCAGCTAAGGAGAGTTGG 453 Query 417 TCATGATGACACGGTGGTAATTGATAATGGTATTGTTCAAGTTACTTTCTCGAGCCCACA 476 |||||| ||||||||| |||||||||||||||| |||||||||||||||| |||| | Sbjct 454 CCATGAT---ACGGTGGTAGTTGATAATGGTATTGTCCAAGTTACTTTCTCGAACCCAGA 510 Query 477 AGGCTTAATTACTGGGATAAAATACCATGGTATCGACAATGTGTTGGACGACGAAATTGA 536 ||||||||| |||||||||||||||||||||||||| ||||||||||||||| ||||||| Sbjct 511 AGGCTTAATAACTGGGATAAAATACCATGGTATCGATAATGTGTTGGACGACAAAATTGA 570 Query 537 GGATCGTGGGTATTGGGACGTAGTCTGGTATGAACCGGGAAAGAAATC-GGAGACTGACA 595 ||||| ||||||||||||||||||||||||||||||| ||||||| | | ||||||||| Sbjct 571 TGATCGCGGGTATTGGGACGTAGTCTGGTATGAACCGGAAAAGAAA-CAGAAGACTGACA 629 Query 596 AATTAGAAGGATCTAAATTTGAAATCATAACTCAGAACGAAGAACAAATTGAAATTTCAT 655 ||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 630 AATTAGAAGGAACTAAATTTGAAATTATAACTCAGAACGAAGAACAAATTGAAATTTCAT 689 Query 656 TTACAAGAACGTGGACCATCTCCAAACGAGGCTCCTTGGTCCCCCTAAACGTAGATAAAA 715 |||||||||||||||| ||||| | ||| |||||||||||||||||||| |||||||||| Sbjct 690 TTACAAGAACGTGGACTATCTCTAGACGTGGCTCCTTGGTCCCCCTAAATGTAGATAAAA 749 Query 716 GATATATTATTCGAAGTGGTGTCTCCGGAATATACATGTACGGTATATTGGAGAGGTTAG 775 |||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||| Sbjct 750 GATATATTATTCGAAGTGGTGTGTCCGGATTATACATGTACGGTATATTGGAGAGGTTAG 809 Query 776 GAGGTTGGCCCGACGTGGACATGGACCAAATCAGGATTGTCTTCAAGCTCAACCCGAAAA 835 |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 810 AAGGTTGGCCCGACGTGGACATGGACCAAATCAGGATTGTCTTCAAGCTCAACCCAAAAA 869 Query 836 AATTTGATTTTATGGCGATATCCGATGATCGACAGAGAAGCATGCCATCGATGGCGGATC 895 |||||||||| |||||||||||||||||||| ||||||||||||||||||||||| |||| Sbjct 870 AATTTGATTTCATGGCGATATCCGATGATCGGCAGAGAAGCATGCCATCGATGGCAGATC 929 Query 896 GAGACAATTCTAAGACATTAGCTTACAAAGAAGCTGTTCTTTTGACAAATCCAAGCAACC 955 |||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 930 GAGAAAATTCTAAGTCATTAGCTTACAAAGAAGCTGTTCTTTTGACAAATCCAAGCAACC 989 Query 956 CTATGCTCAAAGGAGAGGTGGATGATAAGTATATGTACTCAATGGAAGACAAAGACAACA 1015 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 990 CTATGTTCAAAGGAGAGGTGGATGATAAGTATATGTACTCAATGGAAGACAAAGACAACA 1049 Query 1016 ATGTGCATGGTTGGATCACATCGGACCCACCGGTTGGGTTTTGGATGATAACTCCGAGCG 1075 ||||||||||||||||| |||| |||||||| |||||||||||||||||||||||||||| Sbjct 1050 ATGTGCATGGTTGGATCTCATCAGACCCACCTGTTGGGTTTTGGATGATAACTCCGAGCG 1109 Query 1076 ATGAGTTCCGTCTTGGTGGCCCCATCAAGCAAGACCTCACCTCTCATGCTGGACCCATCA 1135 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 1110 ATGAGTTCCGTCTTGGTGGCCCCATCAAGCAAGACCTCACCTCTCATGCCGGACCCATCA 1169 Query 1136 CACTCTCCATGTTTACGAGCACGCATTATGCGGGAAAAGAGATGAGAATGGATTATAGAA 1195 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1170 CACTCTCCATGTTTACGAGCACGCATTATGCGGGAAAAGAGATGAGAATGGATTATAGAA 1229 Query 1196 ATGGAGAGCCATGGAAGAAAGTTTTTGGTCCTGTCTTGGTTTATCTCAACTCTGTCTCTC 1255 ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 1230 ATGGAGAGCCATGGAAGAAAGTTTTTGGTCCTGTCTTGGCTTATCTCAACTCTGTCTCTC 1289 Query 1256 CCAAAGAATCCACTCTTCGTCTCTGGAGAGATGCTAAACGACAGATGGCTGCAGAAGTCA 1315 ||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1290 CCAAAGATTCTACTCTTCGTCTCTGGAGAGATGCTAAACGACAGATGGCTGCAGAAGTCA 1349 Query 1316 AAAGCTGGCCTTATGATTTTGTAACTTCAGAAGATTATCCTCTTCGTCATCAAAGAGGAA 1375 |||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||| Sbjct 1350 AAAGCTGGCCTTATGATTTTATAACTTCAGAAGATTATCCTCTTCGCCATCAAAGAGGAA 1409 Query 1376 CTATCGAAGGTCAATTCTTAATCAAAGACAGTTACGTGTCAAGGTTAAAGATATATGGAA 1435 || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1410 CTCTCGAAGGTCAATTCTTAATCAAAGACAGTTACGTGTCAAGGTTAAAGATATATGGAA 1469 Query 1436 AATTTGCGTTTGTTGGTTTGGCACCAATTGGTGAAGCCGGTTCATGGCAAACCGAATCCA 1495 ||||||| |||||||||||||| |||||||||||||| |||||||||||||||||||| | Sbjct 1470 AATTTGCTTTTGTTGGTTTGGCCCCAATTGGTGAAGCTGGTTCATGGCAAACCGAATCAA 1529 Query 1496 AGGGGTATCAATTTTGGACGAAAGCTGACAGAAAAGGGAGATTCATAATAGAGAATGTGA 1555 |||| |||||||||||||||||||||||||| | |||||||||||||||||||||||||| Sbjct 1530 AGGGTTATCAATTTTGGACGAAAGCTGACAGGAGAGGGAGATTCATAATAGAGAATGTGA 1589 Query 1556 GGACAGGCAATTATAGTCTCTACGCATGGGG-TATTGGTTTTATTGGAGACTATAAGTAT 1614 || |||||||||||||||||||||||||||| | | |||||||||||||||||||||||| Sbjct 1590 GGGCAGGCAATTATAGTCTCTACGCATGGGGGTCT-GGTTTTATTGGAGACTATAAGTAT 1648 Query 1615 GAGCAAAACATTATCATCACGCCAGGTAGCGAGATAAATGTAGGACCTATAGTGTATGAA 1674 ||||||||||||| ||||||||||||||||||||| |||||||| ||| ||||||||||| Sbjct 1649 GAGCAAAACATTACCATCACGCCAGGTAGCGAGATGAATGTAGGGCCTTTAGTGTATGAA 1708 Query 1675 CCGCCGAGAAACGGTCCAACATTGTGGGAAATCGGTGTACCGGATCGAACCGCGGGTGAA 1734 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 1709 CCGCCGAGAAACGGTCCAACATTGTGGGAAATCGGTGTACCGGATCGAACCGCAGGTGAA 1768 Query 1735 TTCTATATACCGGATCCTTATCCTACACTGATGAATAAGCTTTATGTTAACCCACTTCAA 1794 |||||||||||||||||||| |||||||||||||||||||||||||| |||||||| ||| Sbjct 1769 TTCTATATACCGGATCCTTACCCTACACTGATGAATAAGCTTTATGTCAACCCACTCCAA 1828 Query 1795 GACAGATTTAGGCAATATGGATTATGGGATCGTTACGCAGATTTATACCCTCAAAACGAT 1854 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1829 GACAGATTTAGGCAATATGGATTATGGGATCGTTACGCAGATTTATACCCTCAAAACGAT 1888 Query 1855 CTTGTCTACACAATCGGTGTAAGTGATTATAGAAGAGATTGGTTCTTTGCACATGTCACG 1914 ||||||||||||||||||||||||||||||||||| |||||||||||||||||||| || Sbjct 1889 CTTGTCTACACAATCGGTGTAAGTGATTATAGAAGTGATTGGTTCTTTGCACATGTGGCG 1948 Query 1915 AGAAACTTTGGTAACGATACATACCAACCAACGACATGGCAAATCATATTCAACCTAAAA 1974 |||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 1949 AGAAACGTTGGTAACGATACATACCAACCAACAACATGGCAAATCATATTCAACCTAAAA 2008 Query 1975 AACGTGAACCGGATCGGACTCTACACACTCCGACTAGCTCTAGCATCAGCCGCT-AGTTC 2033 ||||||||||| ||||||| ||||||||||||| |||||||||||||||| ||| | ||| Sbjct 2009 AACGTGAACCGTATCGGACGCTACACACTCCGAATAGCTCTAGCATCAGCAGCTGA-TTC 2067 Query 2034 CGAACTACAAATTCGAATCAACGATCCGAAATCCGGT-CATATTTTCACAACCGGTTTAA 2092 ||||||||||| |||||||||||||||||||||| | | ||||||||||||||||| | Sbjct 2068 GGAACTACAAATCCGAATCAACGATCCGAAATCCGATGCG-ATTTTCACAACCGGTTTTA 2126 Query 2093 TCGGAAAGGACAATGCGATCGCGAGACATGGAATTCATGGGTTATATAGATTGTATAGTA 2152 |||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||| Sbjct 2127 TCGGAAAGGACAATGCGATCGCAAGACATGGAATTCATGGATTATATAGATTGTATAGTA 2186 Query 2153 TCGACATTGCTGGAAATCTACTACGTGTTGGTGATAATACAATATATTTAACTCAAACGA 2212 ||||| ||||||||||| ||||| ||||||||||||||||||||| |||||||||||| | Sbjct 2187 TCGACGTTGCTGGAAATTTACTAAGTGTTGGTGATAATACAATATTTTTAACTCAAACCA 2246 Query 2213 GAAGTATAGGAATGTTTCAAGGTGTTATGTATGATTATATTCGTCTTGAAAGTCCTTTTA 2272 |||||| | | ||||||||| |||||||||| ||||||||||||||||||||||||| Sbjct 2247 GAAGTAGAACACCATTTCAAGGTATTATGTATGACTATATTCGTCTTGAAAGTCCTTTTA 2306 Query 2273 GAACTTGAAAAAATAAATTGGATAAGAGTTAAAA-TAATTT-AGTGTAGAAGGAGGTTTA 2330 |||||||| ||||||||||||||| ||||||||| |||||| | |||||||| ||||||| Sbjct 2307 GAACTTGAGAAAATAAATTGGATA-GAGTTAAAAATAATTTCA-TGTAGAAGAAGGTTTA 2364 Query 2331 AATTTATTTATTTGGATGTAATATGA 2356 |||||||||||||| ||||||| ||| Sbjct 2365 AATTTATTTATTTGAATGTAATGTGA 2390 Score = 187 bits (101), Expect = 4e-46 Identities = 127/139 (91%), Gaps = 4/139 (3%) Strand=Plus/Plus Query 1 CCCC-CACATCTGAATGCAGACTCTGTGAGATATATAAAGCTACTTAAGATTCTAATCCT 59 |||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 9 CCCCACACATCTGAATGCAGATTCTGTGAGATATATAAAGCTACTTAAGATTCTAATCCT 68 Query 60 ATAATTATTGTAAGCACTTAAAAAAGAATAATCAGTGAATTTCagagagaagagagagaa 119 || ||||||||||| ||| |||||||||||||||||| |||| |||||||||| ||||| Sbjct 69 ATGATTATTGTAAGAACTAAAAAAAGAATAATCAGTGCATTTTAGAGAGAAGATAGAGAT 128 Query 120 gagagagaTTACCTTCTTC 138 ||||| ||||||||||| Sbjct 129 -AGAGA--TTACCTTCTTC 144 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 117067670940 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5