BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg481121
Length=2358
Score E
Sequences producing significant alignments: (Bits) Value
AT2G22620.1 | Symbols: | Rhamnogalacturonate lyase family prot... 3443 0.0
> AT2G22620.1 | Symbols: | Rhamnogalacturonate lyase family protein
| chr2:9604772-9610595 REVERSE LENGTH=2444
Length=2444
Score = 3443 bits (1864), Expect = 0.0
Identities = 2123/2246 (95%), Gaps = 26/2246 (1%)
Strand=Plus/Plus
Query 118 aagagagagaTTACCTTCTTCATAGGAAAAGATTTCTTTCTTCTTCTGCATTCCTCAAAT 177
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 164 AAGAGAGAGATTACCTTCTTCATAGGAAAAGATTTCTTTCTTCTTCTGCATTCCCCAAAT 223
Query 178 TTTATCTTACCAAGAAACCCAAAACACAAGAAAATCTTAAAGTGAATTGTGGTGGAGATG 237
|||||||| ||||||||||||| ||| |||||||||||||||||||||||||||||||||
Sbjct 224 TTTATCTTCCCAAGAAACCCAACACAGAAGAAAATCTTAAAGTGAATTGTGGTGGAGATG 283
Query 238 AAAGTTGGAGCTCCGGCGAA-TAAGCCGGGTCGGATCATTGTGCAAGttcttcttctaca 296
||||||||||||||||| || ||||||||||||||||||||| |||||| ||||||||||
Sbjct 284 AAAGTTGGAGCTCCGGC-AAGTAAGCCGGGTCGGATCATTGTTCAAGTTTTTCTTCTACA 342
Query 297 tcttcttcttcttcttcttcttcttcAAAGTGTTCATTCTCAGAGATCACAAAACAAACT 356
||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 343 ---------ACTTCTTCTTCTTCTTCAAAGTGTTCATTCACAGAGATCACAAAACAAACT 393
Query 357 TAACATCACAAAGCCTGGACAAAACATACCAGCCTTAACAGTTCAGCTAAGGAGAGTTGG 416
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 394 TAACATCACAAAGCCTGGACAAAACATACCAGCCTTAACAGTTCAGCTAAGGAGAGTTGG 453
Query 417 TCATGATGACACGGTGGTAATTGATAATGGTATTGTTCAAGTTACTTTCTCGAGCCCACA 476
|||||| ||||||||| |||||||||||||||| |||||||||||||||| |||| |
Sbjct 454 CCATGAT---ACGGTGGTAGTTGATAATGGTATTGTCCAAGTTACTTTCTCGAACCCAGA 510
Query 477 AGGCTTAATTACTGGGATAAAATACCATGGTATCGACAATGTGTTGGACGACGAAATTGA 536
||||||||| |||||||||||||||||||||||||| ||||||||||||||| |||||||
Sbjct 511 AGGCTTAATAACTGGGATAAAATACCATGGTATCGATAATGTGTTGGACGACAAAATTGA 570
Query 537 GGATCGTGGGTATTGGGACGTAGTCTGGTATGAACCGGGAAAGAAATC-GGAGACTGACA 595
||||| ||||||||||||||||||||||||||||||| ||||||| | | |||||||||
Sbjct 571 TGATCGCGGGTATTGGGACGTAGTCTGGTATGAACCGGAAAAGAAA-CAGAAGACTGACA 629
Query 596 AATTAGAAGGATCTAAATTTGAAATCATAACTCAGAACGAAGAACAAATTGAAATTTCAT 655
||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 630 AATTAGAAGGAACTAAATTTGAAATTATAACTCAGAACGAAGAACAAATTGAAATTTCAT 689
Query 656 TTACAAGAACGTGGACCATCTCCAAACGAGGCTCCTTGGTCCCCCTAAACGTAGATAAAA 715
|||||||||||||||| ||||| | ||| |||||||||||||||||||| ||||||||||
Sbjct 690 TTACAAGAACGTGGACTATCTCTAGACGTGGCTCCTTGGTCCCCCTAAATGTAGATAAAA 749
Query 716 GATATATTATTCGAAGTGGTGTCTCCGGAATATACATGTACGGTATATTGGAGAGGTTAG 775
|||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||
Sbjct 750 GATATATTATTCGAAGTGGTGTGTCCGGATTATACATGTACGGTATATTGGAGAGGTTAG 809
Query 776 GAGGTTGGCCCGACGTGGACATGGACCAAATCAGGATTGTCTTCAAGCTCAACCCGAAAA 835
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 810 AAGGTTGGCCCGACGTGGACATGGACCAAATCAGGATTGTCTTCAAGCTCAACCCAAAAA 869
Query 836 AATTTGATTTTATGGCGATATCCGATGATCGACAGAGAAGCATGCCATCGATGGCGGATC 895
|||||||||| |||||||||||||||||||| ||||||||||||||||||||||| ||||
Sbjct 870 AATTTGATTTCATGGCGATATCCGATGATCGGCAGAGAAGCATGCCATCGATGGCAGATC 929
Query 896 GAGACAATTCTAAGACATTAGCTTACAAAGAAGCTGTTCTTTTGACAAATCCAAGCAACC 955
|||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 930 GAGAAAATTCTAAGTCATTAGCTTACAAAGAAGCTGTTCTTTTGACAAATCCAAGCAACC 989
Query 956 CTATGCTCAAAGGAGAGGTGGATGATAAGTATATGTACTCAATGGAAGACAAAGACAACA 1015
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 990 CTATGTTCAAAGGAGAGGTGGATGATAAGTATATGTACTCAATGGAAGACAAAGACAACA 1049
Query 1016 ATGTGCATGGTTGGATCACATCGGACCCACCGGTTGGGTTTTGGATGATAACTCCGAGCG 1075
||||||||||||||||| |||| |||||||| ||||||||||||||||||||||||||||
Sbjct 1050 ATGTGCATGGTTGGATCTCATCAGACCCACCTGTTGGGTTTTGGATGATAACTCCGAGCG 1109
Query 1076 ATGAGTTCCGTCTTGGTGGCCCCATCAAGCAAGACCTCACCTCTCATGCTGGACCCATCA 1135
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1110 ATGAGTTCCGTCTTGGTGGCCCCATCAAGCAAGACCTCACCTCTCATGCCGGACCCATCA 1169
Query 1136 CACTCTCCATGTTTACGAGCACGCATTATGCGGGAAAAGAGATGAGAATGGATTATAGAA 1195
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1170 CACTCTCCATGTTTACGAGCACGCATTATGCGGGAAAAGAGATGAGAATGGATTATAGAA 1229
Query 1196 ATGGAGAGCCATGGAAGAAAGTTTTTGGTCCTGTCTTGGTTTATCTCAACTCTGTCTCTC 1255
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1230 ATGGAGAGCCATGGAAGAAAGTTTTTGGTCCTGTCTTGGCTTATCTCAACTCTGTCTCTC 1289
Query 1256 CCAAAGAATCCACTCTTCGTCTCTGGAGAGATGCTAAACGACAGATGGCTGCAGAAGTCA 1315
||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1290 CCAAAGATTCTACTCTTCGTCTCTGGAGAGATGCTAAACGACAGATGGCTGCAGAAGTCA 1349
Query 1316 AAAGCTGGCCTTATGATTTTGTAACTTCAGAAGATTATCCTCTTCGTCATCAAAGAGGAA 1375
|||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||
Sbjct 1350 AAAGCTGGCCTTATGATTTTATAACTTCAGAAGATTATCCTCTTCGCCATCAAAGAGGAA 1409
Query 1376 CTATCGAAGGTCAATTCTTAATCAAAGACAGTTACGTGTCAAGGTTAAAGATATATGGAA 1435
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1410 CTCTCGAAGGTCAATTCTTAATCAAAGACAGTTACGTGTCAAGGTTAAAGATATATGGAA 1469
Query 1436 AATTTGCGTTTGTTGGTTTGGCACCAATTGGTGAAGCCGGTTCATGGCAAACCGAATCCA 1495
||||||| |||||||||||||| |||||||||||||| |||||||||||||||||||| |
Sbjct 1470 AATTTGCTTTTGTTGGTTTGGCCCCAATTGGTGAAGCTGGTTCATGGCAAACCGAATCAA 1529
Query 1496 AGGGGTATCAATTTTGGACGAAAGCTGACAGAAAAGGGAGATTCATAATAGAGAATGTGA 1555
|||| |||||||||||||||||||||||||| | ||||||||||||||||||||||||||
Sbjct 1530 AGGGTTATCAATTTTGGACGAAAGCTGACAGGAGAGGGAGATTCATAATAGAGAATGTGA 1589
Query 1556 GGACAGGCAATTATAGTCTCTACGCATGGGG-TATTGGTTTTATTGGAGACTATAAGTAT 1614
|| |||||||||||||||||||||||||||| | | ||||||||||||||||||||||||
Sbjct 1590 GGGCAGGCAATTATAGTCTCTACGCATGGGGGTCT-GGTTTTATTGGAGACTATAAGTAT 1648
Query 1615 GAGCAAAACATTATCATCACGCCAGGTAGCGAGATAAATGTAGGACCTATAGTGTATGAA 1674
||||||||||||| ||||||||||||||||||||| |||||||| ||| |||||||||||
Sbjct 1649 GAGCAAAACATTACCATCACGCCAGGTAGCGAGATGAATGTAGGGCCTTTAGTGTATGAA 1708
Query 1675 CCGCCGAGAAACGGTCCAACATTGTGGGAAATCGGTGTACCGGATCGAACCGCGGGTGAA 1734
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1709 CCGCCGAGAAACGGTCCAACATTGTGGGAAATCGGTGTACCGGATCGAACCGCAGGTGAA 1768
Query 1735 TTCTATATACCGGATCCTTATCCTACACTGATGAATAAGCTTTATGTTAACCCACTTCAA 1794
|||||||||||||||||||| |||||||||||||||||||||||||| |||||||| |||
Sbjct 1769 TTCTATATACCGGATCCTTACCCTACACTGATGAATAAGCTTTATGTCAACCCACTCCAA 1828
Query 1795 GACAGATTTAGGCAATATGGATTATGGGATCGTTACGCAGATTTATACCCTCAAAACGAT 1854
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1829 GACAGATTTAGGCAATATGGATTATGGGATCGTTACGCAGATTTATACCCTCAAAACGAT 1888
Query 1855 CTTGTCTACACAATCGGTGTAAGTGATTATAGAAGAGATTGGTTCTTTGCACATGTCACG 1914
||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||
Sbjct 1889 CTTGTCTACACAATCGGTGTAAGTGATTATAGAAGTGATTGGTTCTTTGCACATGTGGCG 1948
Query 1915 AGAAACTTTGGTAACGATACATACCAACCAACGACATGGCAAATCATATTCAACCTAAAA 1974
|||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1949 AGAAACGTTGGTAACGATACATACCAACCAACAACATGGCAAATCATATTCAACCTAAAA 2008
Query 1975 AACGTGAACCGGATCGGACTCTACACACTCCGACTAGCTCTAGCATCAGCCGCT-AGTTC 2033
||||||||||| ||||||| ||||||||||||| |||||||||||||||| ||| | |||
Sbjct 2009 AACGTGAACCGTATCGGACGCTACACACTCCGAATAGCTCTAGCATCAGCAGCTGA-TTC 2067
Query 2034 CGAACTACAAATTCGAATCAACGATCCGAAATCCGGT-CATATTTTCACAACCGGTTTAA 2092
||||||||||| |||||||||||||||||||||| | | ||||||||||||||||| |
Sbjct 2068 GGAACTACAAATCCGAATCAACGATCCGAAATCCGATGCG-ATTTTCACAACCGGTTTTA 2126
Query 2093 TCGGAAAGGACAATGCGATCGCGAGACATGGAATTCATGGGTTATATAGATTGTATAGTA 2152
|||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||
Sbjct 2127 TCGGAAAGGACAATGCGATCGCAAGACATGGAATTCATGGATTATATAGATTGTATAGTA 2186
Query 2153 TCGACATTGCTGGAAATCTACTACGTGTTGGTGATAATACAATATATTTAACTCAAACGA 2212
||||| ||||||||||| ||||| ||||||||||||||||||||| |||||||||||| |
Sbjct 2187 TCGACGTTGCTGGAAATTTACTAAGTGTTGGTGATAATACAATATTTTTAACTCAAACCA 2246
Query 2213 GAAGTATAGGAATGTTTCAAGGTGTTATGTATGATTATATTCGTCTTGAAAGTCCTTTTA 2272
|||||| | | ||||||||| |||||||||| |||||||||||||||||||||||||
Sbjct 2247 GAAGTAGAACACCATTTCAAGGTATTATGTATGACTATATTCGTCTTGAAAGTCCTTTTA 2306
Query 2273 GAACTTGAAAAAATAAATTGGATAAGAGTTAAAA-TAATTT-AGTGTAGAAGGAGGTTTA 2330
|||||||| ||||||||||||||| ||||||||| |||||| | |||||||| |||||||
Sbjct 2307 GAACTTGAGAAAATAAATTGGATA-GAGTTAAAAATAATTTCA-TGTAGAAGAAGGTTTA 2364
Query 2331 AATTTATTTATTTGGATGTAATATGA 2356
|||||||||||||| ||||||| |||
Sbjct 2365 AATTTATTTATTTGAATGTAATGTGA 2390
Score = 187 bits (101), Expect = 4e-46
Identities = 127/139 (91%), Gaps = 4/139 (3%)
Strand=Plus/Plus
Query 1 CCCC-CACATCTGAATGCAGACTCTGTGAGATATATAAAGCTACTTAAGATTCTAATCCT 59
|||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 9 CCCCACACATCTGAATGCAGATTCTGTGAGATATATAAAGCTACTTAAGATTCTAATCCT 68
Query 60 ATAATTATTGTAAGCACTTAAAAAAGAATAATCAGTGAATTTCagagagaagagagagaa 119
|| ||||||||||| ||| |||||||||||||||||| |||| |||||||||| |||||
Sbjct 69 ATGATTATTGTAAGAACTAAAAAAAGAATAATCAGTGCATTTTAGAGAGAAGATAGAGAT 128
Query 120 gagagagaTTACCTTCTTC 138
||||| |||||||||||
Sbjct 129 -AGAGA--TTACCTTCTTC 144
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 117067670940
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5