BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg481130
Length=1370
Score E
Sequences producing significant alignments: (Bits) Value
AT2G22690.1 | Symbols: | zinc ion binding | chr2:9649690-96514... 1725 0.0
> AT2G22690.1 | Symbols: | zinc ion binding | chr2:9649690-9651439
REVERSE LENGTH=1386
Length=1386
Score = 1725 bits (934), Expect = 0.0
Identities = 1231/1369 (90%), Gaps = 42/1369 (3%)
Strand=Plus/Plus
Query 19 TCTCTTCTTCCTCCGATT-CATCTTTCTCCGTTTCCGGCGATTATCTTCATCGATTCTTC 77
|||||||||||||||||| ||||||||||||||||||||||| |||||||||| ||||||
Sbjct 34 TCTCTTCTTCCTCCGATTCCATCTTTCTCCGTTTCCGGCGATAATCTTCATCGCTTCTTC 93
Query 78 AGGTGATTATCTGTAGAATGGAGCTAAAGAATGTTAAAGATGCGTTTGATCGTGTTGCCA 137
|| ||||||||| ||||||||||||||||||||| ||||||||||||||||||||| |||
Sbjct 94 AGTTGATTATCTTTAGAATGGAGCTAAAGAATGTCAAAGATGCGTTTGATCGTGTTACCA 153
Query 138 AAAAGCAGAAGCTTTGCTATAGCAAAACGCAGGAAGTTGTAGATAGACTGTCTCAAGAAA 197
|||||||||| || ||||||||||||||||| ||||| ||||| | | ||||||||||||
Sbjct 154 AAAAGCAGAAACTATGCTATAGCAAAACGCATGAAGTGGTAGACAAAATGTCTCAAGAAA 213
Query 198 TCAACAAGGCATTGGATACGATACATGAGGATAATCATGAATCTGTTGTTGCTGATCTGA 257
|| ||||||||||| | |||||||| ||||||||||||||||||||||||||||||||||
Sbjct 214 TCGACAAGGCATTGAAAACGATACAGGAGGATAATCATGAATCTGTTGTTGCTGATCTGA 273
Query 258 AGAAAACTTTTGAGGAGATTTCTCCAATCAATCAACTAGAAGCGTCTCAGAAAGAAGTAA 317
|||||||||||||||||||| |||||||||||| |||||||||||||||||||||| |||
Sbjct 274 AGAAAACTTTTGAGGAGATTGCTCCAATCAATCTACTAGAAGCGTCTCAGAAAGAAATAA 333
Query 318 ATGGTGCTCTGACCAAATATCCGAAAGCT-TTGGATAAAACTCTGAATCCAGATATATCG 376
|||| | ||| |||||||| ||||||||| || || ||||||||||||||||||||||||
Sbjct 334 ATGGGGTTCTTACCAAATACCCGAAAGCTCTT-GACAAAACTCTGAATCCAGATATATCG 392
Query 377 ACGGCTTATAGAAACATCGAGTTTGAT-CGTCATACTGTTCACCAGATAATAGCTCAGTT 435
|||||||| |||||| | |||||||| | |||||| ||||| |||||| ||||||||||
Sbjct 393 ACGGCTTACAGAAACGTTAAGTTTGATAC-TCATACAGTTCATCAGATACTAGCTCAGTT 451
Query 436 TTTCTACAGGCAAGGCATGTATGAAATTGGTGA-TAGTTTCGTTTCTGAGATTGGTGAGC 494
||||||||||||||||||||| || ||||||| | ||||| |||| |||| |||||||
Sbjct 452 TTTCTACAGGCAAGGCATGTACGACGTTGGTGACT-GTTTCATTTCCGAGACTGGTGAGG 510
Query 495 CTGAGCTTGTTGAATCTTCTGTTACGAAAGCCTTCATGGAAATGAATATGATACTTGAAG 554
| ||| ||||||||||||||| ||||| ||||||||||||||||||||||||||||
Sbjct 511 TTAAGC---CTGAATCTTCTGTTACTAAAGCTTTCATGGAAATGAATATGATACTTGAAG 567
Query 555 CCATGGGAA-AACGAGATCTTGGACCAGCTCTT-AAGTGGGTAGCTTCAAACTCTGACAA 612
|||| | || |||| ||||| ||||||||| || || |||||||||||||||||||||||
Sbjct 568 CCAT-GAAAGAACGGGATCTCGGACCAGCT-TTGAAATGGGTAGCTTCAAACTCTGACAA 625
Query 613 GCTAAAGCAAGCAAAGTCAGATCTTGAGTTGAAACTTCACAGCCTTCACTTCCTGGAAAT 672
||||||| ||||||||||||||||||||||||||||||||||||||||||| |||| ||
Sbjct 626 GCTAAAGGAAGCAAAGTCAGATCTTGAGTTGAAACTTCACAGCCTTCACTTTTTGGAGAT 685
Query 673 AGCAAAAGACAAAAACTCCAAAGAAGCTATCAACTACGCGAGAAAACACTTTGCTGCATA 732
||| |||||||||| |||| ||||||||||||||||||||||||||||||||||| | ||
Sbjct 686 AGCTAAAGACAAAACCTCCGAAGAAGCTATCAACTACGCGAGAAAACACTTTGCTACGTA 745
Query 733 TT---CAGATA---GCTGTTTGCCTGAGATTCAGAAACTCATGTGCTCTCTTTTATGGAA 786
|| |||||| ||||||| |||||||| |||||||||||||||||||| |||||||
Sbjct 746 TTCAGCAGATAGCTGCTGTTTCCCTGAGATACAGAAACTCATGTGCTCTCTCTTATGGAT 805
Query 787 CAGAAACCTCGTTAAATCCCCGTACTCAGATTTCCTCTCACCGGTATTATGGACCAACGC 846
|||||||||| ||||||||| |||||||| ||||||||||| ||||| |||||||||||
Sbjct 806 CAGAAACCTCAATAAATCCCCATACTCAGAGTTCCTCTCACCTGTATTGTGGACCAACGC 865
Query 847 TGCCAAGGAACTAACCCGACAATACTGCAAACTACTCGGTGAACCACCAGAGAGCCCTTT 906
||||||||||||||||||||||||||||| |||||||||||| |||||||||| |||||
Sbjct 866 TGCCAAGGAACTAACCCGACAATACTGCATCCTACTCGGTGAATCACCAGAGAGTCCTTT 925
Query 907 AAGTGTAACAGTTGCAGCTGGTTCACAAGTTCTACCGACGTTTTTGAAATACTT-AACCG 965
|||||||||||||||||| |||||||||||| |||||||||||||||| || || || ||
Sbjct 926 AAGTGTAACAGTTGCAGCAGGTTCACAAGTTTTACCGACGTTTTTGAAGTATTTGAA-CG 984
Query 966 TGATGCCAGAGAAAAGACAAGAGTGGCAAACAATGAAGCAACTTCTTGTACCTGTGGAAC 1025
|| |||| ||||||||| ||||||||||||||||| ||||||||||||||||||||||||
Sbjct 985 TGCTGCCGGAGAAAAGAAAAGAGTGGCAAACAATGGAGCAACTTCTTGTACCTGTGGAAC 1044
Query 1026 TCTCTGAAGAGTATCGCTTCTACTCGGTCTTTGTTTGTCCTGTCTCTAAAGAACACTCTA 1085
|||||||||||||||||||||||||||||||||| || |||||||||||||||||||| |
Sbjct 1045 TCTCTGAAGAGTATCGCTTCTACTCGGTCTTTGTCTGCCCTGTCTCTAAAGAACACTCGA 1104
Query 1086 GTGAAGATAACCCGCCGATGAGATTGGGTTGCGGTCATGTCCTTTGCAAGCAGTCTATCA 1145
| |||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1105 GCGAAGATAATCCGCCGATGAGATTGGCTTGCGGTCATGTCCTTTGCAAGCAGTCTATCA 1164
Query 1146 ACAGAATGTCGAGGAATGGATCAAGGTCGTTCAAGTGTCCTTATTGTCCAACAGATATTG 1205
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1165 ACAGAATGTCGAGGAATGGTTCAAGGTCGTTCAAGTGTCCTTATTGTCCAACAGATATTG 1224
Query 1206 ATTCTTCGCAGTGTAAGCAGTTATATTTTTAGAGTAGTTTTATAACCCTTTCTTTT-CA- 1263
|| |||||||||||||||||||||||||||||| ||| |||| ||| || ||| | ||
Sbjct 1225 ATGCTTCGCAGTGTAAGCAGTTATATTTTTAGACTAGCTTTACAAC--TT-CTTATGCAG 1281
Query 1264 C-TT-CTCAAAGAAGGTAGACAAATGTTTGTGGTCAttttttttCTTCTTTCTTTTATGA 1321
| || || |||||| |||||||||||||| | | || ||| || |||||||||
Sbjct 1282 CATTTCT-AAAGAAAGTAGACAAATGTTTCT--T-AT-------CTT-TT-CTTTTATGA 1328
Query 1322 ACTTGAATTGAGTTCGTGTACAAAAACTATAGTTTTAAACAAAACCTTT 1370
|||||||||| |||||||||||||||||||||||| ||| |||||||||
Sbjct 1329 ACTTGAATTGGGTTCGTGTACAAAAACTATAGTTTGAAATAAAACCTTT 1377
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 67469532480
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5