BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg481136
Length=1120
Score E
Sequences producing significant alignments: (Bits) Value
AT2G22750.2 | Symbols: | basic helix-loop-helix (bHLH) DNA-bin... 1186 0.0
AT4G37850.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-bin... 272 5e-72
> AT2G22750.2 | Symbols: | basic helix-loop-helix (bHLH) DNA-binding
superfamily protein | chr2:9672144-9673625 FORWARD LENGTH=920
Length=920
Score = 1186 bits (642), Expect = 0.0
Identities = 837/923 (91%), Gaps = 45/923 (5%)
Strand=Plus/Plus
Query 1 CATGAATTCACTCGTCGGAGATGTTCCACAGTCTCTCTCATCTCTTGATGATACCACCAC 60
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 CATGAACTCACTCGTCGGAGATGTTCCACAGTCTCTCTCATCTCTTGATGATACCACCAC 60
Query 61 TTGTTATAACTTTGATGCTTCTTATAATGATGA-TTTGGTCGAAGAGAA-ACCTTCAAAG 118
|||||||||| |||||||||||| |||| | | |||||| ||||| || ||||||||||
Sbjct 61 TTGTTATAACCTTGATGCTTCTTGTAAT-AAAAGTTTGGTAGAAGA-AAGACCTTCAAAG 118
Query 119 ATCCTCAAGACCACTCTCATATCGCCAAAGTTACATCCTTTTTCTTCTTCCAATCCTCCT 178
|||||||||||||||| |||||| ||||| |||||||||||||||||||| |||||||||
Sbjct 119 ATCCTCAAGACCACTCACATATCACCAAACTTACATCCTTTTTCTTCTTCTAATCCTCCT 178
Query 179 CCTCCAAAGGACCAGCCCTCTTCTACGATTATTTCTTTCGAAAAGACGGGTTTAAATGTA 238
||||||||| ||||||||||||||| |||| ||||||| |||||||| |||||| ||||
Sbjct 179 CCTCCAAAGCACCAGCCCTCTTCTAGGATTCTTTCTTTTGAAAAGACAGGTTTACATGTT 238
Query 239 ATGAATCACAACTCTCCAAACTTAATATTTAGCACCAAGGAAGAAGAAATTGGATTACCA 298
||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||
Sbjct 239 ATGAATCACAACTCTCCAAACTTAATATTTAGCCCCAAGGACGAAGAAATTGGATTACCA 298
Query 299 AACCAGaaaaaaaCCGAGCTGATAATAAGAGGGACAAAGAGGGCGCAACCCTTGACTCGA 358
| || || ||| |||||||||||||||||||||||||||| || ||| |||||||||||
Sbjct 299 GAGCATAAGAAAGCCGAGCTGATAATAAGAGGGACAAAGAGAGCTCAATCCTTGACTCGA 358
Query 359 AGCCAATCAAATGCTCAAGATCACATACTCGCAGAGAGAAAACGGAGAGAGAAGCTTACT 418
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 359 AGCCAATCAAATGCTCAAGATCACATACTGGCAGAGAGAAAACGGAGAGAGAAGCTTACT 418
Query 419 CAAAGATTTGTAGCTCTTTCAGCCCTAGTTCCTGGCCTAAAGAAGATGGACAAGGCTTCT 478
|||||||||||||||||||| || ||| ||||||||||||||||||||||||||||||||
Sbjct 419 CAAAGATTTGTAGCTCTTTCCGCGCTAATTCCTGGCCTAAAGAAGATGGACAAGGCTTCT 478
Query 479 GTGTTGGGAGATGCAATAAAGCATATAAAGTACCTCCAAGAGAGTGTGAAAGAGTATGAG 538
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 479 GTGTTGGGAGATGCAATAAAGCATATAAAGTACCTCCAAGAGAGTGTGAAAGAGTATGAG 538
Query 539 GAACAAAAGAAGGAAAAAACAATGG--T---TG-TT---GTAAAGAAGTCTCAG-CTAGT 588
||||||||||||||||| ||||||| | || || |||||||||||| || || ||
Sbjct 539 GAACAAAAGAAGGAAAAGACAATGGAATCAGTGGTTCTTGTAAAGAAGTCT-AGTCTGGT 597
Query 589 TTTAGACGAAAATCATCAA---TCATCATCATC--C-TC-GA-G----T-----T--C-- 627
|||||| |||||||||||| ||||||||||| | || || | | | |
Sbjct 598 TTTAGATGAAAATCATCAACCATCATCATCATCTTCCTCAGATGGAAATCGCAATAGCTC 657
Query 628 -A----AA-TCTTCCAGAGATAGAAGTTAGGGTTTCGGGAAAAGATGTTCTTATTAAGAT 681
| || ||||||||| ||||||||||||||||| |||||||||||||||||||||||
Sbjct 658 GAGCTCAAATCTTCCAGAAATAGAAGTTAGGGTTTCAGGAAAAGATGTTCTTATTAAGAT 717
Query 682 CCTATGCGAGAAGCAAAAGGGTAATGTGATCAAGATTATGGGGGAAATTGAGAAGCTTGG 741
||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||
Sbjct 718 CCTATGCGAGAAGCAAAAGGGTAATGTGATCAAGATTATGGGGGAGATTGAAAAGCTTGG 777
Query 742 TTTGTCTATCACCAACAGCAATGTCTTGCCCTTTGGACCCGCTTTTGACATCTCTATTAT 801
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 778 TTTGTCTATCACCAACAGCAATGTCTTGCCCTTTGGACCCACTTTTGACATCTCTATTAT 837
Query 802 CGCTCAGAA---TAACAATTTTGATATGAAAATCGATGATGTTGTGAAGAACTTGAGTTG 858
||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 838 CGCTCAGAAGAATAACAATTTTGATATGAAAATCGAGGATGTTGTGAAGAACTTGAGTTT 897
Query 859 TGGCTTATCAAAGCTCACTTAAT 881
|||||||||||||||||||||||
Sbjct 898 TGGCTTATCAAAGCTCACTTAAT 920
> AT4G37850.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-binding
superfamily protein | chr4:17796093-17797900 REVERSE
LENGTH=1315
Length=1315
Score = 272 bits (147), Expect = 5e-72
Identities = 434/565 (77%), Gaps = 50/565 (9%)
Strand=Plus/Plus
Query 328 AGGGACAAAGAGGGCGCAACCCTTGACTCGAAGCCAATCAAATGCTCAAGATCACATACT 387
|||||| |||||||| ||||| || | ||| |||||| |||||||| ||||||||| |
Sbjct 464 AGGGACCAAGAGGGCTCAACCGTTTTCAAGAAACCAATCCAATGCTCAGGATCACATAAT 523
Query 388 CGCAGAGAGAAAACGGAGAGAGAAGCTTACTCAAAGATTTGTAGCTCTTTCAGCCCTAGT 447
|| || |||||||| ||||||||||||||||||||||| ||||||||||| || |||||
Sbjct 524 AGCCGAAAGAAAACGTAGAGAGAAGCTTACTCAAAGATTCGTAGCTCTTTCCGCTCTAGT 583
Query 448 TCCTGGCC-TAAAGAAGATGGACAAGGCTTCTGTGTTGGGAGATGCAATAAAGCATATAA 506
|||||||| |||| ||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 584 TCCTGGCCTTAAA-AAGATGGACAAGGCTTCTGTGTTGGGAGATGCATTAAAGCATATAA 642
Query 507 AGTACCTCCAAGAGAGTGTGAAAGAGTATG-AGGAACAAAAGAAGGAAA-AA-A------ 557
|||| |||||||| || ||| ||||| || ||||||| ||||| |||| || |
Sbjct 643 AGTATCTCCAAGAAAGAGTGGGAGAGT-TGGAGGAACAGAAGAAAGAAAGAAGATTGGAA 701
Query 558 -CAATGGTTGTTGTAAAGAAGTCTCAGCTAGTT-TTAGACGAAAATCATCAATCAT-CAT 614
|||||||| |||| ||||||||| |||| | | || ||||| ||| ||||||||| | |
Sbjct 702 TCAATGGTTCTTGTGAAGAAGTCTAAGCT-GATCTTGGACGATAATAATCAATCATTC-T 759
Query 615 CATCCTC--G--A-G-T---T-CA---A-----ATCTTCCAGAGATAGAAGTTAGGGTT- 655
| || || | | | | | | | ||||||| ||||| || || || ||
Sbjct 760 CTTCTTCTTGTGAAGATGGCTTCTCGGACTTGGATCTTCCCGAGATCGAGGTAAGA-TTC 818
Query 656 TCGGGAA-AAGATGTTCTTATTAAGATCCTATGCGAGAAGCAAAAGGGTAATGT-GATCA 713
|||| | |||||||||| || |||||||| |||||||||||||||||| || | | ||
Sbjct 819 TCGG-ATGAAGATGTTCTAATCAAGATCCTTTGCGAGAAGCAAAAGGGTCATCTTGC-CA 876
Query 714 AGATTATGGGGGAAATTGAGAAGCTTGGTTTGTCT-ATCACCAACAGCAA-TGTCTTGCC 771
||||||||| || |||||||| ||| | | | | || || || ||| ||| |||
Sbjct 877 AGATTATGGCCGAGATTGAGAAACTTCATATCT-TGATAACTAATT-CAAGTGTATTGAA 934
Query 772 CTTTGGACCCGCTTTTGACATCTCTATTATCGCTCAGAATAACAAT--TTT-GATATGAA 828
|||||||| || |||| ||| | ||||| ||| |||| | | | ||| || ||||
Sbjct 935 TTTTGGACCAACTCTTGATATCACCATTATAGCTAAGAAGGAGAGTGATTTCGACATGAC 994
Query 829 AATCGATG-ATGTTGTGAAGAACTT 852
| || ||| ||||||| |||| |||
Sbjct 995 ACTC-ATGGATGTTGTAAAGAGCTT 1018
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54919396230
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5