BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg481137
Length=1047
Score E
Sequences producing significant alignments: (Bits) Value
AT2G22760.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-bin... 1153 0.0
> AT2G22760.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-binding
superfamily protein | chr2:9677880-9679364 FORWARD LENGTH=1219
Length=1219
Score = 1153 bits (624), Expect = 0.0
Identities = 880/996 (88%), Gaps = 48/996 (5%)
Strand=Plus/Plus
Query 49 TATGGATGAAGACTTCTTCTTAACCGATTTCTCACTAGAAGACATTGATTTCGACTTTAA 108
|||||||||||| || |||||| ||||||||||||||| |||||||||||||||||||||
Sbjct 132 TATGGATGAAGATTTTTTCTTACCCGATTTCTCACTAGTAGACATTGATTTCGACTTTAA 191
Query 109 TATTTACGAGGaaaaaaaTCTATCACCTGATG-----------AA-T--C----AGCTGA 150
||||||||| ||||| ||| |||||||||||| || | | ||||||
Sbjct 192 TATTTACGAAGAAAATAATTTATCACCTGATGAATCTTTATCAAATTCACGAAGAGCTGA 251
Query 151 TCAATCATCAAAATTTGATCATCAAATGCATCTTGAGTTCCTCAGAGAGCAGCCAAA-GC 209
|||||| ||||| |||||||||||||||||| |||||| |||||||||| ||||||| ||
Sbjct 252 TCAATCGTCAAAGTTTGATCATCAAATGCATTTTGAGTGCCTCAGAGAGAAGCCAAAGGC 311
Query 210 --C-----AG----TGGTGAAGATCAACAACAAGCAACAACTGATTTCTTTTGACTTCTC 258
| || || ||||||||||||||||||||||||||||||||||||| |||||
Sbjct 312 AGCGGTGAAGCCTATGATGAAGATCAACAACAAGCAACAACTGATTTCTTTTGATTTCTC 371
Query 259 TAGTAATG-TGTCTTCTTCTCCAGCCACGGAGGAGATCATTATGGATAAATTGGTTGGAC 317
|||||||| | | ||||||||||||| ||||||||||||||||||||||||||||||| |
Sbjct 372 TAGTAATGTTAT-TTCTTCTCCAGCCGCGGAGGAGATCATTATGGATAAATTGGTTGGTC 430
Query 318 ATGGAACCAAAAGAAAAACATGTTTTCATGGCACAAGATCTCCGGTTCTAGCGAAAGAAC 377
||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||
Sbjct 431 GTGGAACCAAAAGAAAAACATGTTCTCATGGCACAAGATCTCCGGTTCTTGCGAAAGAAC 490
Query 378 ATGTTTTAGCCGAGAGAAATCGCCGTGAGAAGCTTTCTCAAAAATTCATTGCTCTTTCAG 437
||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||
Sbjct 491 ATGTTTTAGCCGAGAGAAAGCGCCGTGAGAAGCTTTCTGAAAAATTCATTGCTCTTTCAG 550
Query 438 CTCTTCTTCCCGGGCTTAAGAAGGCGGACAAGGTAACGATTCTTGATGACGCGATCTCAC 497
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 551 CTCTCCTTCCCGGGCTTAAGAAGGCGGACAAGGTAACGATTCTTGATGACGCGATCTCGC 610
Query 498 GTATgaaacaactccaagaacaactaagaaagctcaaagaagaaaaagaagcaacaagag 557
|||||||||||||||||||||||||||||| |||||| ||||||||||||||||| |||
Sbjct 611 GTATGAAACAACTCCAAGAACAACTAAGAACGCTCAAGGAAGAAAAAGAAGCAACGAGAC 670
Query 558 aaaTTCAATCCC-GTATTCTTGTGAAGAAATCTAAACTACTTTTCGACGCGGAACCTAAC 616
|||| ||||| | |||||||| |||||||||||| | ||||||||| ||||||||||
Sbjct 671 AAATGGAATCCATG-ATTCTTGTAAAGAAATCTAAAGTGTTTTTCGACGAGGAACCTAAC 729
Query 617 CTATCATCTTCTACT-CTAGATCATGATC-AATTTGATCAAGCGTTGCCAGAAATCGATG 674
||||||| |||| || | || |||| || |||| |||||||| || ||||||||||| |
Sbjct 730 CTATCATGTTCTCCTTC-AGTTCAT-ATTGAATTCGATCAAGCATTACCAGAAATCGAAG 787
Query 675 CAAAAATATCTCAAAACGACATTCTCATCCGAATCCACTGCGAGAAAAGCAAAGGGTGCA 734
| ||||| |||||||| ||||||||||||||||||| ||||||||||||||||||||||
Sbjct 788 CGAAAATTTCTCAAAATGACATTCTCATCCGAATCCTTTGCGAGAAAAGCAAAGGGTGCA 847
Query 735 TGATTAACATACTAAAGACAGTTGAAAATCTT-CAACTGCGCATCGAAAATAGCATCGTT 793
|||| ||||||||||| ||| ||||||| ||| ||| ||||||| ||||||||||||||
Sbjct 848 TGATCAACATACTAAACACAATTGAAAA-CTTTCAATTGCGCATTGAAAATAGCATCGTA 906
Query 794 TTGCCATTCGGAGACTCAACTCTCGACATCACAGTCCTTGCACAGATGGATAAAGATTTT 853
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 907 TTGCCATTCGGAGACTCGACTCTCGACATCACAGTCCTTGCACAGATGGATAAAGATTTT 966
Query 854 TCGGTGAGTGTACTTAAGGATCTCGTAAGGGACCTGAGACTCGCAATGGTTTAGGTCTTC 913
||| ||||| ||||||||||||| ||| || |||||||||||||||||||||||||||||
Sbjct 967 TCGATGAGTATACTTAAGGATCTTGTACGGAACCTGAGACTCGCAATGGTTTAGGTCTTC 1026
Query 914 TTCCAAGTTTCAGTAACCTGAGAGATTGTACATGCATTGACGCAATCGTTTCGTGGATTT 973
|| ||||||| |||||||||||| | |||||| | ||| ||||||||||||||||||
Sbjct 1027 TTTCAAGTTTTAGTAACCTGAGAC-T-GTACAT---T-GACACAATCGTTTCGTGGATTT 1080
Query 974 GCTGTCGTTTTCTTCCTAAGGATTTTT-CACACGTG 1008
||| ||||||||||| | || |||||| ||||||||
Sbjct 1081 GCTATCGTTTTCTTCTTGAG-ATTTTTTCACACGTG 1115
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51339298234
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5