BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg481138
Length=1336
Score E
Sequences producing significant alignments: (Bits) Value
AT2G22770.1 | Symbols: NAI1 | basic helix-loop-helix (bHLH) DNA... 1975 0.0
> AT2G22770.1 | Symbols: NAI1 | basic helix-loop-helix (bHLH) DNA-binding
superfamily protein | chr2:9684725-9686595 FORWARD
LENGTH=1370
Length=1370
Score = 1975 bits (1069), Expect = 0.0
Identities = 1247/1331 (94%), Gaps = 19/1331 (1%)
Strand=Plus/Plus
Query 18 ATATA-TCCTAAAGTTTTCTTTCCTTTCGCTTCTTGTTTAG--------TTTCAACATAA 68
||||| ||||||||||||||||||||| ||||||||||||| ||||||||| |
Sbjct 30 ATATACTCCTAAAGTTTTCTTTCCTTTAGCTTCTTGTTTAGTTTTATTCTTTCAACATTA 89
Query 69 ACttttttttGCTTTCTTGATC-TAAGa-aaaaaaaGTTTGAAAAAATGGAAGATTCAAG 126
|||||||||| || ||||| || |||| ||||| || || |||||| ||||||||
Sbjct 90 ACTTTTTTTTACTCTCTTG-TCAAAAGAGAAAAAGAG-TTCTTGTAATGGATGATTCAAG 147
Query 127 CTTTATGGATTTGATGATCGACACTGACGAGTATCTGATCGATGACTGGGAATCCGATTT 186
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 148 CTTTATGGATTTGATGATCGACACTGACGAGTATCTGATCGATGACTGGGAATCCGATTT 207
Query 187 CCCGATATACGGAGAAACTAACACCAAACCCGGTTCTGAGTCTGGATCTGGAACCGGGTT 246
|||||||| ||| |||||||||||||| |||||||| |||||||||||||||||||||||
Sbjct 208 CCCGATATGCGGGGAAACTAACACCAACCCCGGTTCCGAGTCTGGATCTGGAACCGGGTT 267
Query 247 TGAGTTGGTACCAGAGAGACCAACAAAGCAAATGAAAACCAACAACAACATCAACTCAAC 306
||||||| || |||| |||||||| |||||||||||||||||||||||||| || |||||
Sbjct 268 TGAGTTGCTAGCAGAAAGACCAACGAAGCAAATGAAAACCAACAACAACATGAATTCAAC 327
Query 307 AtcttcttctccgtcgtcgtcttcttcttcttcgtGTTCGCGCACGTCACAAGTGATCTC 366
|||||||||||||||||| ||||||||||| | | |||| ||||||||||||||||||||
Sbjct 328 ATCTTCTTCTCCGTCGTCTTCTTCTTCTTC-T-G-GTTCTCGCACGTCACAAGTGATCTC 384
Query 367 ATTCGGGTCTCCAGACACGAAGACAAACCCGGTCGAGACATCATTGAACTTCTCCAACCA 426
||| ||||||||||||||||| || ||||||||||||||||| |||||||||||||||||
Sbjct 385 ATTTGGGTCTCCAGACACGAAAACCAACCCGGTCGAGACATCTTTGAACTTCTCCAACCA 444
Query 427 AGTAAGCATGGATGAGAAAGTGGGGTCCAAAAGAAAAGATTGTGTTAACAATGGAGGAAG 486
||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 445 AGTAAGCATGGATCAGAAAGTGGGGTCGAAAAGAAAAGATTGTGTTAACAATGGAGGAAG 504
Query 487 AAGAGAACCACATCTATTGAAAGAACATGTTTTGGCTGAACGAAAACGTCGACAAAAGCT 546
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 505 AAGAGAACCACATCTATTGAAAGAACATGTTTTGGCTGAACGAAAACGTCGACAAAAGCT 564
Query 547 CAACGAGCGTTTGATTGCTCTCTCTGCTCTTCTTCCTGGCCTCAAAAAGACGGACAAGGC 606
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 565 CAACGAGCGTTTGATTGCTCTCTCTGCTCTTCTTCCTGGCCTCAAAAAGACGGACAAGGC 624
Query 607 AACCGTTCTTGAAGACGCGATCAAGCATTTGAAACAACTTCAAGAACGGGTAAAGAAGCT 666
||| ||||||||||| || ||||| |||||||||||||||||||| ||||||||||||||
Sbjct 625 AACAGTTCTTGAAGATGCCATCAAACATTTGAAACAACTTCAAGAGCGGGTAAAGAAGCT 684
Query 667 AGAGGAAGAGCGAGTCGG-GACCAAGAATATGGATCAATCGGTTATATTGGTGAAGAGAT 725
||||| |||||||| || ||||||||| ||||||||||| ||||||||||||||||||
Sbjct 685 GGAGGAGGAGCGAGT-GGTGACCAAGAAAATGGATCAATCAATTATATTGGTGAAGAGAT 743
Query 726 CTCAAGTGTATTTAGATGATGATTCTTCATCTTATTCTTCTACTTGCTCTGCTGCGTCTC 785
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 744 CTCAAGTGTATTTAGATGATGATTCTTCATCTTATTCTTCTACTTGCTCTGCTGCGTCTC 803
Query 786 CTCTGTCTTCTTCTTCGGACGAAGTTTCGATCTTGAAACAAACAATGCCTATGATCGAAG 845
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 804 CTCTGTCTTCTTCTTCGGACGAAGTTTCGATCTTCAAACAAACAATGCCTATGATCGAAG 863
Query 846 CAAGAGTGTCAGGCAAAGATTTGCTGATTACAGTTCATTGTGAGAAGAACAAAGGGTGTA 905
| |||| |||| || ||||||| |||||| ||| |||||||||||||||||||||||||
Sbjct 864 CCCGAGTTTCAGACAGAGATTTGTTGATTAGAGTCCATTGTGAGAAGAACAAAGGGTGTA 923
Query 906 TGATTAAGATCTTAAGTTCCTTGGAGAATTTTCGTCTTGAAGTAGTCAATAGCTTCACTT 965
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 924 TGATTAAGATCTTAAGTTCCTTGGAGAAGTTTCGTCTTGAAGTAGTCAATAGCTTCACTT 983
Query 966 TACCATTTGGAAATTCAACTATCGTTATAACCATTCTCTCTAAGATGGACAACAAGTTTT 1025
|||||||||||||||||||| ||||||||||||||||| |||||||||||||||| ||||
Sbjct 984 TACCATTTGGAAATTCAACTCTCGTTATAACCATTCTCACTAAGATGGACAACAAATTTT 1043
Query 1026 CTCGACCTGTTGAAGAAGTGGTGAAGAACATTAGACTTGCGTTAGCTGAATAATCTTTTT 1085
||||||| ||||||||||||||||||||||| ||| |||||||||||||||||| ||||
Sbjct 1044 CTCGACCAGTTGAAGAAGTGGTGAAGAACATAAGAGTTGCGTTAGCTGAATAATATTTTA 1103
Query 1086 AAAAACGTTTTATGTGAATTTCGCAGTGAATAAACGTGTTAGATTTGGTCCCCAATTTTG 1145
|||||||||| ||||||||||||||||| |||||||||||||||||||| |||||||||
Sbjct 1104 AAAAACGTTT-ATGTGAATTTCGCAGTGGTTAAACGTGTTAGATTTGGTCTCCAATTTTG 1162
Query 1146 ACCAGATCACTCGGTTTAGTTGAATAATGACTAGTTGGATAATAAAACCAGAGATATGCA 1205
|||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||
Sbjct 1163 ACCAGATCACTCGGTTTAGTTGAATAATGAGTAGTTGGATAATAAAACCAGATATATGCA 1222
Query 1206 CGAAATATGGGATTTTGTCGTTTGTTGAGTGCAAAAGCTGGATTGGTGTGTGTACCTAAT 1265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1223 CGAAATATGGGATTTTGTCGTTTGTTGAGTGCAAAAGCTGGATTGGTGTGTGTACCTAAT 1282
Query 1266 TATGGCTGTATCATTGGTTTTGATACTTTGATATATATTTTTCCCCAATGTCATTGGGTT 1325
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1283 TATGGCTGTATCATTGGTTTTGATACTTTGATATATATTTTTCCCCAATATCATTGGGTT 1342
Query 1326 GGATCAATAAT 1336
|| ||||||||
Sbjct 1343 GGTTCAATAAT 1353
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 65762713950
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5