BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg481139
Length=1615
Score E
Sequences producing significant alignments: (Bits) Value
AT2G22780.1 | Symbols: PMDH1 | peroxisomal NAD-malate dehydroge... 2061 0.0
> AT2G22780.1 | Symbols: PMDH1 | peroxisomal NAD-malate dehydrogenase
1 | chr2:9689415-9692154 REVERSE LENGTH=1876
Length=1876
Score = 2061 bits (1116), Expect = 0.0
Identities = 1401/1526 (92%), Gaps = 69/1526 (5%)
Strand=Plus/Plus
Query 1 TCTTGCCACGCTTCCCAATACATGGATCCATTTTGCTGACGTCATCTTCATCACTATCTC 60
||||||||| |||||||||||||||||||| ||| |||||||||||| ||||||| ||
Sbjct 75 TCTTGCCACACTTCCCAATACATGGATCCA-TTT--TGACGTCATCTTTATCACTA--TC 129
Query 61 TCTCTATTATATAAATCTCTTCGTA--C-----CC--TT-TT-ACC--GA-----T--TC 100
||||||||||||||||||||||||| | || || || ||| || | ||
Sbjct 130 TCTCTATTATATAAATCTCTTCGTACCCTTTTACCGATTCTTCACCGTGATCGCTTAATC 189
Query 101 AGACCTCAATTTCG--G-T----------G-TTGAAGCAGCTATGGATCCAAACCAACGC 146
|||||||||||||| | | | || ||||||| |||||||||||||||||
Sbjct 190 AGACCTCAATTTCGTTGTTAAAGAACAAAGCTTTAAGCAGCCATGGATCCAAACCAACGT 249
Query 147 ATCGCGAGAATCTCTGCTCATCTCAATCCTCCTAATCTTGATAATCAGATTGTTGACGGG 206
||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||
Sbjct 250 ATCGCGAGAATCTCTGCTCATCTCAATCCTCCTAATCTTCATAATCAGATTGCTGACGGG 309
Query 207 TCGGGTTTGAATCGGGTGGCTTGTCGGGCAAAAGGTGGATCACCTGGATTCAAAGTGGCG 266
|| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 310 TCAGGTTTGAATCGGGTGGCTTGTCGGGCAAAAGGTGGATCACCCGGATTCAAAGTGGCG 369
Query 267 ATACTTGGAGCAGCTGGAGGAATTGGGCAACCTCTTGCGATGTTGATGAAGATGAATCCT 326
||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||
Sbjct 370 ATACTTGGAGCAGCTGGTGGAATTGGACAACCTCTTGCGATGTTGATGAAGATGAATCCT 429
Query 327 TTGGTTTCGGTTCTTCATCTTTATGATGTTGCTAATGCTCCTGGTGTTACTGCTGATATT 386
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 430 TTGGTTTCGGTTCTTCATCTCTATGATGTTGCTAATGCTCCTGGTGTTACTGCTGATATT 489
Query 387 AGTCACATGGATACTAGTGCCGTTGTTCGTGGATTTCTCGGGCAACCGCAGTTAGAGGAA 446
||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 490 AGTCATATGGATACTAGTGCCGTTGTTCGTGGATTTCTCGGGCAGCCGCAGTTAGAGGAA 549
Query 447 GCACTTACGGGTATGGATTTAGTGATTATACCTGCTGGTGTTCCGAGGAAACCAGGGATG 506
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 550 GCACTTACGGGTATGGATTTAGTGATCATACCTGCTGGTGTTCCGAGGAAACCAGGGATG 609
Query 507 ACGAGGGATGATCTGTTTAACATTAATGCTGGGATCGTGAGGACACTCTCTGAAGCTATA 566
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 610 ACGAGGGATGATCTGTTTAACATTAATGCTGGGATTGTGAGGACACTCTCTGAAGCTATA 669
Query 567 GCTAAATGTTGTCCTAAAGCAGTTGTGAATATAATCAGTAATCCGGTGAACTCCACGGTG 626
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 670 GCTAAATGTTGTCCTAAAGCAATTGTGAATATAATCAGTAATCCGGTGAACTCCACGGTG 729
Query 627 CCTATCGCAGCTGAGGTTTTTAAGAAAGCTGGAACCTTTGATCCAAAGAAACTCATGGGA 686
|| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 730 CCAATCGCAGCTGAGGTTTTCAAGAAAGCTGGAACCTTTGATCCAAAGAAACTCATGGGT 789
Query 687 GTCACTATGCTTGATGTTGTTAGAGCTAATACTTTTGTGGCGGAAGTAATGAGTCTTGAT 746
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 790 GTCACTATGCTTGATGTTGTTAGAGCTAATACCTTTGTGGCGGAAGTAATGAGTCTTGAT 849
Query 747 CCCCGTGAAGTTGATGTTCCGGTTGTTGGAGGACACGCAGGAGTTACGATTTTACCGCTG 806
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 850 CCCCGTGAAGTTGAAGTTCCGGTTGTTGGAGGACACGCAGGAGTTACGATTTTACCACTG 909
Query 807 CTTTCTCAGGTGAAACCCCCTTGCTCATTCACTCAAAAAGAGATTGAATATCTCACAGAC 866
||||| ||||||||||| |||||||| |||||||||||||||||||||||||||||||||
Sbjct 910 CTTTCGCAGGTGAAACCTCCTTGCTCGTTCACTCAAAAAGAGATTGAATATCTCACAGAC 969
Query 867 CGCATCCAAAACGGTGGCACTGAAGTTGTTGAGGCTAAAGCTGGTGCAGGTTCTGCAACA 926
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 970 CGCATCCAAAACGGTGGCACTGAAGTTGTTGAGGCTAAAGCTGGAGCAGGTTCTGCAACA 1029
Query 927 CTATCCATGGCATATGCAGCAGTGGAGTTTGCAGATGCTTGCCTCAGGGGTCTACGAGGT 986
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1030 CTATCCATGGCATATGCAGCAGTGGAGTTTGCAGATGCTTGCCTCAGGGGTCTACGAGGT 1089
Query 987 GATGCAAACATCGTTGAGTGCGCATATGTGGCATCCCATGTGACTGAGCTTCCCTTCTTC 1046
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1090 GATGCAAACATCGTTGAGTGCGCATATGTGGCATCCCATGTGACTGAGCTTCCCTTCTTC 1149
Query 1047 GCATCGAAGGTGCGTCTGGGACGATGTGGGATCGACGAAGTGTACGGTCTTGGACCATTG 1106
||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||
Sbjct 1150 GCATCGAAGGTGCGTCTGGGACGATGTGGGATCGATGAAGTGTACGGCCTTGGACCATTG 1209
Query 1107 AACGAATATGAGAGGATGGGATTAGAGAAGGCAAAGAAAGAGCTTTCAGGAAGTATTGAG 1166
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
Sbjct 1210 AACGAATATGAGAGGATGGGATTAGAGAAGGCAAAGAAAGAGCTTTCAGTAAGTATTCAT 1269
Query 1167 AAAGGTGTTACCTTTGCGAAGAAATAAAGAGACTTGATCGTGAAT-AA-ACACTTGAAAG 1224
|||||||||||||||||||||||||||||||||| |||||||||| || |||||| |||
Sbjct 1270 AAAGGTGTTACCTTTGCGAAGAAATAAAGAGACTCGATCGTGAATAAACACACTT--AAG 1327
Query 1225 TGATGGTTTTGGAATAGTGATAGTTTT----T--GAATAA-G------AA-CAACGC-C- 1268
||||||||||||||||| | |||||| | |||||| | || || || |
Sbjct 1328 CGATGGTTTTGGAATAGTCAGAGTTTTGGAATAAGAATAATGCCTCACAATAAAAGCTCT 1387
Query 1269 T-C-G----C---AATAAAAGC-TAAAGGTTCAAGAAACTCATCTCCTCTAGGTAAAATC 1318
| | | | || || | ||||||||||||||||||||||||| |||||||||||
Sbjct 1388 TGCGGTCTTCTTGGATCCAATCTTAAAGGTTCAAGAAACTCATCTCCTTTAGGTAAAATC 1447
Query 1319 TTCGATTGTTTTATCGTTCCGTCGAACCACACTGTTCTTAGATACGAGAACATTTATGAT 1378
|||||||||||||||||||| ||||||||| ||||||||||||| ||||| ||||||||
Sbjct 1448 TTCGATTGTTTTATCGTTCCATCGAACCACTTTGTTCTTAGATACAAGAACGTTTATGAT 1507
Query 1379 CTGTGTACTTGGGTTACAAAAGTGAGAACAGAGCAATAATCTTGCGTCATTTTTTCTCAT 1438
| |||| ||||| || |||||||||||||||||||||||||||| |||||||||||||
Sbjct 1508 TTATGTAGTTGGGCTATAAAAGTGAGAACAGAGCAATAATCTTGCAACATTTTTTCTCAT 1567
Query 1439 CTTCTTGGTATGttttttttttGTTG 1464
||||||||| ||||||||||||||||
Sbjct 1568 CTTCTTGGTGTGTTTTTTTTTTGTTG 1593
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 79768666005
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5