BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg481141
Length=2278
Score E
Sequences producing significant alignments: (Bits) Value
AT2G22795.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 1502 0.0
> AT2G22795.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT4G37820.1);
Has 799854 Blast hits to 188815 proteins in 4452 species:
Archae - 4529; Bacteria - 144236; Metazoa - 287749; Fungi -
87083; Plants - 43826; Viruses - 3662; Other Eukaryotes - 228769
(source: NCBI BLink). | chr2:9697233-9699897 REVERSE LENGTH=2530
Length=2530
Score = 1502 bits (813), Expect = 0.0
Identities = 1407/1671 (84%), Gaps = 131/1671 (8%)
Strand=Plus/Plus
Query 626 gaagagagtaaagaaaagagtggtactgaagagagtgaggttgaggagaagaaagaCAAT 685
|||||||||| || ||||||||||| ||||||||||||||||| |||||||||||||||
Sbjct 899 GAAGAGAGTAGGGAGAAGAGTGGTACCGAAGAGAGTGAGGTTGAAGAGAAGAAAGACAAT 958
Query 686 GGTGGTACCGAagagagtgaggttgaagagaagaaagaaaacggaggtacagatgagagc 745
||| ||| |||||||||||||||||||||||||||||||||| ||||| || ||| |
Sbjct 959 GGTAGTAGCGAAGAGAGTGAGGTTGAAGAGAAGAAAGAAAACAGAGGT----AT-AGA-C 1012
Query 746 gaggagagtaaagagaagagTGGTGGTACGGAAGAGAAGGATGTAGATGAGAAAGCGAAT 805
|| ||| | || | ||| ||| ||||||| ||| |||||||||||||||||
Sbjct 1013 GA-GAGCG---AG-G-AGA------GTA---AAGAGAAAGATATAGATGAGAAAGCGAAT 1057
Query 806 ATTGAAGAGGCAAGAGAGAATAATTACAAGGGAGATGATGCTTCTAGTGAGGTAGTCCAT 865
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1058 ATTGAAGAGGCAAGAGAGAATAATTACAAGGGAGATGATGCTTCTAGTGAGGTAGTTCAT 1117
Query 866 GAGTCTGAGGAGAAGACTAGTGAGTCGGAGAACGGTGAGAAAGTGGAAGACAAGTCGGGT 925
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1118 GAGTCTGAGGAGAAGACTAGTGAGTCGGAGAACAGTGAGAAAGTGGAAGACAAGTCGGGT 1177
Query 926 ATAAAGACTGAAGAAGTGGAGGATTCTGTTATCAAGAGTGTTTTGCCTAACACAACCGAT 985
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||
Sbjct 1178 ATAAAGACTGAAGAAGTGGAAGATTCTGTTATCAAGAGTGTTTTGCCTAACACAACAGAT 1237
Query 986 AATGGGGAAAGCAGTAGTGATGAGAAGA---CTGGTTCATCCTCAGGTCATGAATCGGAT 1042
|||||||||||||||||||||||||||| ||||||| || ||||||||||||||||||
Sbjct 1238 AATGGGGAAAGCAGTAGTGATGAGAAGAGTACTGGTTCGTCTTCAGGTCATGAATCGGAT 1297
Query 1043 TCGTCGGAAGGAATCAAATCTGAGGGTGAATCTATGGAGAAGAATGAGTTGTTGGAGAAG 1102
|| | ||| ||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1298 TCCTTGGAGGGAATAAAATCTGAGGGTGAATCTATGGAGAAGAATGAGTTGTTGGAGAAG 1357
Query 1103 GAGTTCCATGATTCTAACGGTGAGTCTTCTGTGACCGGGAAATCAACGGGTTCTGGAGAC 1162
|||||| ||||||||||||||||||| ||||||||||| ||||| |||||||||||||||
Sbjct 1358 GAGTTCAATGATTCTAACGGTGAGTCCTCTGTGACCGGTAAATCCACGGGTTCTGGAGAC 1417
Query 1163 GGAAGTTCTCAAGAAACTAG-GAAA-G--ATG--AAGATGAGA--AA-G--A-G-AAGGT 1209
||| |||||||||||||| ||| | || |||| |||| || | | | || ||
Sbjct 1418 GGAGGTTCTCAAGAAACTTCTGAAGTGTCATCTCAAGAGGAGAGTAAAGGCAAGGAAAGT 1477
Query 1210 -AGA-ATCTTCT--G-AAG--TGT-CATCTCAAGAGGAAAGTAAAGACA-AGGAAAGTGA 1260
||| | | | ||| | | | |||||||||||||||||||||| || ||| |||
Sbjct 1478 GAGACAAAGGATAAGGAAGAATCTTCGTCTCAAGAGGAAAGTAAAGACAGAG-AAACTGA 1536
Query 1261 GACAAAGGAGAAGGAAGAATCTTCGTCTCAAGAGGAAAGTAAAGATAAAGAAACTGA-GA 1319
|||||||||||| ||||| ||||| || |||||||||| || || |||||||| || |
Sbjct 1537 GACAAAGGAGAAAGAAGAGTCTTCATCGCAAGAGGAAACTATGGACAAAGAAACCGAAG- 1595
Query 1320 CAAAGGAGAAAGAAGAGTCTTCGTCGCAAGAGGAAA-CTAAAGACAAAGAAACCGAAGCA 1378
|||||||||||| ||||||||| || |||||| ||| | || ||||| ||||| || | |
Sbjct 1596 CAAAGGAGAAAGTAGAGTCTTCTTCTCAAGAGAAAAACGAA-GACAAGGAAACTGA-G-A 1652
Query 1379 AAGGAGAAAGAAGAGTCTTCAT-CACAAGAGAAAAACGAA-GACAAGGAA-ACTGAGACC 1435
|| | | || | ||||| | | | |||| ||| | || || || ||| || |||||
Sbjct 1653 AA--ATA--GA-G--TCTTCGTTC-CTAGAGGAAA-CTAAAGAAAAAGAAGAC-GAGACA 1702
Query 1436 AAGGAGAAAGAAGAAAAGCCGAGTCTTCGTCCCAAGAGGAAACTAAAGAAAAAGAAACCG 1495
|||||||||||||| | ||||| ||||||||| |||| ||||||| |||||||
Sbjct 1703 AAGGAGAAAGAAGA---G-----TCTTCTTCCCAAGAGAAAACCGAAGAAAAGGAAACCG 1754
Query 1496 AGACGAAGGAGAAAGAAGAGTCTTCTTCCCAAGAGAAAACTGAAGACAAGGA-AACCGAG 1554
|||| ||||| || ||||||||||| || |||||| ||||| ||||||| || || |||
Sbjct 1755 AGACAAAGGATAACGAAGAGTCTTCGTCTCAAGAGGAAACTAAAGACAAAGAGAAT-GAG 1813
Query 1555 ACAAAG-GAGAACGAAGAGTCTTCGTCTCaagaggaaactaaagagaaa-gaaaac-gag 1611
| | | ||||| |||||| |||| || ||||| ||| ||||||| ||| |||| | |||
Sbjct 1814 A-AGATTGAGAAAGAAGAGGCTTCATCGCAAGAAGAATCTAAAGA-AAATGAAA-CTGAG 1870
Query 1612 a-agattgagaaagaagagtcttcgtctcaagaggaaactaaagagaaagaaaacgagaa 1670
| | | ||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1871 ACAAAG-GAGAAAGAAGAGTCTTCTTCTCAAGAGGAAACTAAAGAGAAAGAAAACGAGAA 1929
Query 1671 gattgagaaagaagagTCTTCATCTCAAGAGgaaactaaag-gcaaagaaaacaagaaca 1729
||||||||||||||||||| || | |||||||||||||||| | ||||||||| |||| |
Sbjct 1930 GATTGAGAAAGAAGAGTCTGCACCGCAAGAGGAAACTAAAGAG-AAAGAAAACGAGAAGA 1988
Query 1730 ttgagaaagaaggaacacgagaagattgagaaagaagagtctgcatcgcaagaggaagac 1789
|||| ||||||| | | | | | | || || || || | ||||| || |
Sbjct 1989 TTGAAAAAGAAG-AGT-CT-GCA--TCGC-AA-GAGGAAACT--A----AAGAG-AA-A- 2032
Query 1790 aaagaaaccgagacaaaagagaaagaagagTCATCGTCCAACGATTCACAAGAAAATGGA 1849
||||||||||||||||||||||||||||||||||||||||| ||||| ||||||| |
Sbjct 2033 ---GAAACCGAGACAAAAGAGAAAGAAGAGTCATCGTCCAACGAATCACAGGAAAATGTA 2089
Query 1850 AGTAGTGAGAATGAAAAGAAGGAACAGGT---------CGAGAAGAAGACTGACGAAGAC 1900
| | |||| ||| ||||| |||||||| ||||||||||||||||||||||
Sbjct 2090 AACACCGAGAGTGAGAAGAAAGAACAGGTTGAGGAAAACGAGAAGAAGACTGACGAAGAC 2149
Query 1901 ACAAGTGAATCGAGCAAAGAAAATAGCAACTCAGATACTGAACAAAAGCAATCAGAGGAA 1960
||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 2150 ACAAGTGAATCTAGCAAAGAAAATAGCGTTTCAGATACTGAACAAAAGCAATCAGAGGAA 2209
Query 1961 ACATCAGAAACTTCAGAGAAAGAGGAAAGCAACAAGAATGGTGAAACAGAGGTAACTCAA 2020
|||||||| | || || | | |||||||||||||||||||||||||||||||||||
Sbjct 2210 ACATCAGAGA----AG-GA--G-G-AAAGCAACAAGAATGGTGAAACAGAGGTAACTCAA 2260
Query 2021 GAACATTCTGATTCTTCTTCAAATACTAATCTTCCTCAAGAAGTAAAAGATGTTCGCACC 2080
||||| |||||||||||||| |||||||||||||||||||||| |||||||||||||||
Sbjct 2261 GAACAATCTGATTCTTCTTCGGATACTAATCTTCCTCAAGAAGTCAAAGATGTTCGCACC 2320
Query 2081 GATCTTGAAACTTTGCCTGACTCTGGAAATGGAGGGAGCAATGAGAGTGTTGCGGCTGAG 2140
|||||||||||||| || || |||||||||||||||||||||||||||||||||||||||
Sbjct 2321 GATCTTGAAACTTTACCGGATTCTGGAAATGGAGGGAGCAATGAGAGTGTTGCGGCTGAG 2380
Query 2141 TAAATCTCCCC-TGGTTGATCAAATTTTCTCATTTGATGTTGTTTTAGTAGAGAGttttt 2199
||||||| | |||||| ||||||| ||||||| |||||||||| |||||||||||||
Sbjct 2381 TAAATCTTACAATGGTTGCTCAAATTCTCTCATTCGATGTTGTTT-AGTAGAGAGTTTT- 2438
Query 2200 tttttACGAATTGAATTTGTGTCATTGTAATTTGTTGTAATCttttttttt 2250
||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 2439 -----ACGAATTCAATTTGTGTCATTGTAATTTGTTGTAATCTTTTTTTTT 2484
Score = 789 bits (427), Expect = 0.0
Identities = 504/538 (94%), Gaps = 18/538 (3%)
Strand=Plus/Plus
Query 1 TTTGATTCCAATTGAAGGGACGCACGATTTTAGTGGCAGTTTAACGGGAACAC-T-ACT- 57
|||||||||||||||||||||||||||||||| |||||||||||||||||||| | ||
Sbjct 3 TTTGATTCCAATTGAAGGGACGCACGATTTTAATGGCAGTTTAACGGGAACACTTCTCTC 62
Query 58 TCTCTCTCTAGATCCCaaaaatcaaaatctttcctttat-caaaaattcttcatctttct 116
|||||||||||||||||||| |||||||| ||||||| | |||||||| |||||||||||
Sbjct 63 TCTCTCTCTAGATCCCAAAACTCAAAATCGTTCCTTTTTGCAAAAATTGTTCATCTTTCT 122
Query 117 gttttcccagaaataaaaaaGCTCTCTTGATTTGCCTTTCCTGGTTTTGAGGAAGTATGT 176
||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||
Sbjct 123 GTTTTCCCAGAAATAAAAAAGCTCTCTTGATTTGCCTTTCCTGGTATTGAGGAAATATGT 182
Query 177 TTAGATCATCACCAAGAAGAGGACAGAGATCAAAGGGTTTCAAGGTGAAGCATTGTATTC 236
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 183 TTAGATCATCACCGAGAAGAGGACAGAGATCAAAGGGTTTCAAGGTGAAGCATTGTATTC 242
Query 237 AATTGACTTTGTTACTTAGTGTTGGAATATGGTTGCTTTATCAAGTTAAGCATTCTCATG 296
||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 243 AATTGACTTTGTTGCTTAGTGTTGGGATATGGTTGCTTTATCAAGTTAAGCATTCTCATG 302
Query 297 AGAAGAAATCTCAGTTTGAGGAAAGTGCAAAGATTGTTGTtggtggtggtggtggtgATA 356
|||||||| ||||||||||||||||||||||||||||||||||||||| | || |||
Sbjct 303 AGAAGAAAGCTCAGTTTGAGGAAAGTGCAAAGATTGTTGTTGGTGGTG-T--TG---ATA 356
Query 357 AAGTTGTCAAGCTTGGTAGGAAAGATCTTATCCCTCGTGTTGTGGA---AGATGAAGCTG 413
||||||||||||||||||||||||||||||||||||||||||| || |||||||||||
Sbjct 357 AAGTTGTCAAGCTTGGTAGGAAAGATCTTATCCCTCGTGTTGTTGAGGTAGATGAAGCTG 416
Query 414 AGGATGAAGGAAGTAAGAATGTTGTTGAGAGTTTTAATGGCGG-T---GGTGATGATAAG 469
|||||||||||||||||||||||||||||||||||||| ||| | ||||||||||||
Sbjct 417 AGGATGAAGGAAGTAAGAATGTTGTTGAGAGTTTTAATT-CGGGTAATGGTGATGATAAG 475
Query 470 GAGAAtgagattgtagaaggaggtgaagagagtaaggagaaggaaagtgaagggattg 527
|||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||
Sbjct 476 GAGAATGAGATTGTTGAAGGAGGTGAAGAGAATAAGGAGAAGGAAAGTGAAGGGATTG 533
Score = 640 bits (346), Expect = 0.0
Identities = 478/537 (89%), Gaps = 27/537 (5%)
Strand=Plus/Plus
Query 1210 AGAATCTTCTGAAGTGTCATCTCAAGAGGAAAGTAAAGACAAGGAAAGTGAGACAAAGGA 1269
|||| ||||||||||||||||||||||||| ||||||| |||||||||||||||||||||
Sbjct 1429 AGAAACTTCTGAAGTGTCATCTCAAGAGGAGAGTAAAGGCAAGGAAAGTGAGACAAAGGA 1488
Query 1270 GAAGGAAGAATCTTCGTCTCAAGAGGAAAGTAAAGATAAAGAAACTGAGACAAAGGAGAA 1329
||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||
Sbjct 1489 TAAGGAAGAATCTTCGTCTCAAGAGGAAAGTAAAGACAGAGAAACTGAGACAAAGGAGAA 1548
Query 1330 AGAAGAGTCTTCGTCGCAAGAGGAAACTAAAGACAAAGAAACCGAAGCAAAGGAGAAAGA 1389
|||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1549 AGAAGAGTCTTCATCGCAAGAGGAAACTATGGACAAAGAAACCGAAGCAAAGGAGAAAGT 1608
Query 1390 AGAGTCTTCATCACAAGAGAAAAACGAAGACAAGGAAACTGAGACCAAGGAGAAAGAAGA 1449
||||||||| || ||||||||||||||||||||||||||| | |||| |
Sbjct 1609 AGAGTCTTCTTCTCAAGAGAAAAACGAAGACAAGGAAACT-----------G--AGAA-A 1654
Query 1450 AAAGCCGAGTCTTCGTCCCAAGAGGAAACTAAAGAAAAAGAA-ACCGAGACGAAGGAGAA 1508
| | |||||||||| || |||||||||||||||||||||| | |||||| ||||||||
Sbjct 1655 ATA---GAGTCTTCGTTCCTAGAGGAAACTAAAGAAAAAGAAGA-CGAGACAAAGGAGAA 1710
Query 1509 AGAAGAGTCTTCTTCCCAAGAGAAAACTGAAGACAAGGAAACCGAGACAAAGGAGAACGA 1568
||||||||||||||||||||||||||| ||||| |||||||||||||||||||| |||||
Sbjct 1711 AGAAGAGTCTTCTTCCCAAGAGAAAACCGAAGAAAAGGAAACCGAGACAAAGGATAACGA 1770
Query 1569 AGAGTCTTCGTCTCaagaggaaactaaagagaaagaaaacgagaagattgagaaagaaga 1628
|||||||||||||||||||||||||||||| ||||| || ||||||||||||||||||||
Sbjct 1771 AGAGTCTTCGTCTCAAGAGGAAACTAAAGACAAAGAGAATGAGAAGATTGAGAAAGAAGA 1830
Query 1629 gtcttcgtctcaagaggaaactaaagagaaa-gaaaac-gaga-agattgagaaagaaga 1685
| |||| || ||||| ||| ||||||| ||| |||| | |||| | | |||||||||||
Sbjct 1831 GGCTTCATCGCAAGAAGAATCTAAAGA-AAATGAAA-CTGAGACAAAG-GAGAAAGAAGA 1887
Query 1686 gTCTTCATCTCAAGAGgaaactaaag-gcaaagaaaacaagaacattgagaaagaag 1741
|||||| ||||||||||||||||||| | ||||||||| |||| |||||||||||||
Sbjct 1888 GTCTTCTTCTCAAGAGGAAACTAAAGAG-AAAGAAAACGAGAAGATTGAGAAAGAAG 1943
Score = 224 bits (121), Expect = 3e-57
Identities = 244/301 (81%), Gaps = 18/301 (6%)
Strand=Plus/Plus
Query 1229 TCTCAAGAGGAAAGTAAAGACAAGGA-AAGTGAGACA-AAGGAGAAGGAAGAATCTTCGT 1286
||||||||||||| ||||||||| || || ||||| | | ||||| ||||| |||| |
Sbjct 1781 TCTCAAGAGGAAACTAAAGACAAAGAGAA-TGAGA-AGATTGAGAAAGAAGAGGCTTCAT 1838
Query 1287 CTCAAGAGGAAAGTAAAGATAAA-GAAACTGAGACAAAGGAGAAAGAAGAGTCTTCGTCG 1345
| ||||| ||| |||||| ||| |||||||||||||||||||||||||||||||| ||
Sbjct 1839 CGCAAGAAGAATCTAAAGA-AAATGAAACTGAGACAAAGGAGAAAGAAGAGTCTTCTTCT 1897
Query 1346 CAAGAGGAAACTAAAGACAAAGAAACCGAAGCAA-AG-GAGAAAGAAGAGTCTTCATCAC 1403
||||||||||||||||| ||||||| ||| | || | ||||||||||||||| || | |
Sbjct 1898 CAAGAGGAAACTAAAGAGAAAGAAAACGA-G-AAGATTGAGAAAGAAGAGTCTGCACCGC 1955
Query 1404 AAGAGAAAAACGAAGACAAGGAAACTGAGACCAAGGAGAAAGAAGAAAAGCCGAGTCTTC 1463
||||| ||| | || | | | ||| || | | || ||| ||| ||| | |||||| |
Sbjct 1956 AAGAGGAAA-CTAA-AGA-G-AAA--GAAAACGAGAAGATTGAA-AAA-GAAGAGTCTGC 2007
Query 1464 GTCCCAAGAGGAAACTAAAGAAAAAGAAACCGAGACGAAGGAGAAAGAAGAGTCTTCTTC 1523
|| ||||||||||||||||| |||||||||||||| || |||||||||||||| || ||
Sbjct 2008 ATCGCAAGAGGAAACTAAAGAGAAAGAAACCGAGACAAAAGAGAAAGAAGAGTCATCGTC 2067
Query 1524 C 1524
|
Sbjct 2068 C 2068
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 113051627340
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5