BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg481143
Length=2008
Score E
Sequences producing significant alignments: (Bits) Value
AT4G05505.1 | Symbols: | transposable element gene | chr4:2785... 1727 0.0
AT4G06570.1 | Symbols: | transposable element gene | chr4:3518... 1676 0.0
AT2G12420.1 | Symbols: | transposable element gene | chr2:5027... 1650 0.0
AT4G06627.1 | Symbols: | transposable element gene | chr4:3604... 1539 0.0
AT1G38140.1 | Symbols: | transposable element gene | chr1:1430... 403 3e-111
AT2G05647.1 | Symbols: | transposable element gene | chr2:2104... 307 2e-82
> AT4G05505.1 | Symbols: | transposable element gene | chr4:2785708-2787991
FORWARD LENGTH=2284
Length=2284
Score = 1727 bits (935), Expect = 0.0
Identities = 1252/1399 (89%), Gaps = 46/1399 (3%)
Strand=Plus/Plus
Query 642 AGTAGATTAGGTTTAGGGTTAATATTGAGTAATGTGTGTGTGTAT-CTGCTAAGTAGATT 700
||| |||||| | || |||||||||||||||||||||||||||| || | |||| ||||
Sbjct 818 AGTTGATTAGAATAAGAGTTAATATTGAGTAATGTGTGTGTGTATCCT-CAAAGTTGATT 876
Query 701 AGGTGTGT-ATAT-GGTAAGCTGAGTAT-ATTAGGTTTAGGGTTAATATTGAGTAATATG 757
|||||||| |||| ||| | ||| | |||||||| || |||||||||||||||| ||
Sbjct 877 AGGTGTGTAATATATTTAA--TAAGT-TGATTAGGTTAAGCGTTAATATTGAGTAATGTG 933
Query 758 TGTGTGTATGGTAAGCTG---A-----GTAGATGCTAATTGGTTTATGTAATTGTAGGTT 809
||| | |||| |||| || | ||| ||||||||||||||||||||||| |||||
Sbjct 934 TGTATATATGCTAAGTTGATTAGGTTTGTATATGCTAATTGGTTTATGTAATTGAAGGTT 993
Query 810 TGGTCACGACAATGGTAAGCTGACCCGGAAGATCACAAAGGTATTCACAAACAAGTTTAA 869
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 994 TGGTCACGACAATGGTAAGCTGACCCGGAAGATCACAAAGGTCTTCACAAACAAGTTTAA 1053
Query 870 TGGGCCATATTACAATTGGAGTTGTGTACCTACTGAAAGAAGACACAAATACTTCCTCGA 929
|||||||| ||||| |||||| ||||||||||||||||||||||||| ||||||||||||
Sbjct 1054 TGGGCCATTTTACAGTTGGAGCTGTGTACCTACTGAAAGAAGACACATATACTTCCTCGA 1113
Query 930 ATTCGCGGTAAATTAACTTCTATTGTC-T-GT-A--TC---CATTTGGTTTGGTTTGGTT 981
|||||| |||||||||||||| | || | | | || |||||||||||||||||||
Sbjct 1114 ATTCGCAATAAATTAACTTCTA-TCTCTTATTAATCTCTTACATTTGGTTTGGTTTGGTT 1172
Query 982 GTTTGATCACTAACATCAAACTCTCCTCTTGTTTTATAGAAAACACACACATGGCATCCA 1041
||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||
Sbjct 1173 GTTTGATCACTAACATCAAACTCTCCTCTTGTTTTGTAGAGTACACACACATGGCATCCA 1232
Query 1042 TCACTGACCGGTGTAATTGAAGAGAAATT-TTACAAAATATGTC-AGCTGCGTATGAAGG 1099
|||||||| |||||| ||||||| ||||| || |||||||||| | | |||||||||||
Sbjct 1233 TCACTGACTGGTGTAGTTGAAGAAAAATTCTT-TAAAATATGTCAAAC-GCGTATGAAGG 1290
Query 1100 ACATGGTTTCTAAGGCTTGCTCAAAACGAGCCACTGAGAGACCGCCATGGATTGAGAAGA 1159
|||||||||||||||||||| ||||||| || | |||| |||||||||||||||||||||
Sbjct 1291 ACATGGTTTCTAAGGCTTGCGCAAAACGTGCAAATGAGCGACCGCCATGGATTGAGAAGA 1350
Query 1160 CATTGTGGAAGGAAATGTGTGAGTATTTGGACACAGAAGAAGCCCTTGCCAAGAGTTCAA 1219
||||||||||||||||||||| ||||| ||||||| |||||||| |||||||||||||||
Sbjct 1351 CATTGTGGAAGGAAATGTGTGCGTATTGGGACACAAAAGAAGCCATTGCCAAGAGTTCAA 1410
Query 1220 CCACATCAGCAGCTCGAATGTCTGACCGTAATGGTCTTGGTCCTCACAAGCATGTATCGG 1279
|||||||||||||| ||||||||||||||||||||| |||||||||||| ||||||||||
Sbjct 1411 CCACATCAGCAGCTTGAATGTCTGACCGTAATGGTCCTGGTCCTCACAAACATGTATCGG 1470
Query 1280 GGCCAAAGTCTTTCTTACAAATCGAGCAAGAGATGGTAAGTTACA-TCAAGCACTCT-T- 1336
||||||||||||||||||| || ||||||||||| |||||||||| | | | | |
Sbjct 1471 GGCCAAAGTCTTTCTTACAGATTGAGCAAGAGATAGTAAGTTACATTTGTTTA-TTTATA 1529
Query 1337 G--T--TTATTTATTAAGAATTTAAAtttttttGTGAACAACATTTCAGGAAATTGAGCT 1392
| | || |||||||||| | | |||| ||||||||||||||||||||||||||||| |
Sbjct 1530 GAATGATT-TTTATTAAGAGTCTGAATTGTTTTGTGAACAACATTTCAGGAAATTGAGTT 1588
Query 1393 GGGAAGACCACCTACTATTGGTGAGATATTCATTAGGACTCATACCAAAAAAGATGGGAG 1452
||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||
Sbjct 1589 GGGAAGACCACCTACTATTGGTGAGATATTCGTTAAGACTCATACCAAAAAAGATGGGAC 1648
Query 1453 TTTTGTTGATAGGAAGGCGCAGGAAATTCATGAGGCATATTTGAAGAACAAGGAAGCTAA 1512
||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||
Sbjct 1649 TTTTGTTGATAGGAAGGCGCATGAAATTCATGAGGCATATTTGAGGAACAAGGAAGCTAA 1708
Query 1513 GTTGGCTGCCCTTGTGAATGATGAAGGGTCTGATGGTACATCCCGTCGATCAGAACTATC 1572
||||||||||| || ||||||||||||||| |||||||| ||||||||||||||||||||
Sbjct 1709 GTTGGCTGCCCGTGAGAATGATGAAGGGTCAGATGGTACTTCCCGTCGATCAGAACTATC 1768
Query 1573 TCAAGAGGAGGATGATGAGATCTTCCTTCTGGTAATG-TGGTTGATCCTCtt-t-ttttt 1629
||| ||||||||||||||| ||||||||| ||||||| | ||| ||||||| | |||||
Sbjct 1769 TCAGGAGGAGGATGATGAGGTCTTCCTTCAGGTAATGGTC-TTGTTCCTCTTGTCTTTTT 1827
Query 1630 tATTATTATTATCACTTACTTCATCTTTTA-AGAACTAATCCTCTTGTCttttttttGCA 1688
| |||| |||||||||| ||||||||||| | || ||||||||||||||||| ||||||
Sbjct 1828 T-TTAT-ATTATCACTTGCTTCATCTTTTCTACAA-TAATCCTCTTGTCTTTTGTTTGCA 1884
Query 1689 GTCAACTGTCACAAACGAGAGAGGGGTATACTTCGGAATGGGAAGCTTAGGGAGGTACAT 1748
|||||||||||||||| ||||| |||||||||| ||||||||||||||||||||||||||
Sbjct 1885 GTCAACTGTCACAAACAAGAGATGGGTATACTTTGGAATGGGAAGCTTAGGGAGGTACAT 1944
Query 1749 CAATGGGAAGAGGAAGTACCCAGGAAGCAGTTCTGCTTTCACTTCCTTGCAGTCACAGCT 1808
|||||| ||| ||||||||||||| ||||||||||||||||| ||||||||||||||||
Sbjct 1945 CAATGGAAAGCGGAAGTACCCAGGCTGCAGTTCTGCTTTCACTACCTTGCAGTCACAGCT 2004
Query 1809 TGAGGAAGCCAACCGCAAGATAGAAGAACAAGCGAATCTCCAAGCACATCGGGAGGCAGA 1868
| ||||||||||| ||||||||||||||||||||| |||||| |||||||| ||||||||
Sbjct 2005 TTAGGAAGCCAACTGCAAGATAGAAGAACAAGCGACTCTCCAGGCACATCGTGAGGCAGA 2064
Query 1869 GGCATTGCGGGTGAAAGCTGAGCAAGCAGAGATCAAGCGTGTTGCTAATGAGCAACAAGC 1928
||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 2065 GGCATTGAGGGTGAAAGCTGAGCAAGCAGATATCAAGCGTGTTGCTAATGAGCAACAAGA 2124
Query 1929 AGAGATCAAACACTTGAGGATGGTGAAGAAGTACTTGACCGAAACTGACCCCAAGTTTCT 1988
|||||||||||||||||||||||| |||||||||||||| |||| ||||||||||||||
Sbjct 2125 AGAGATCAAACACTTGAGGATGGTTAAGAAGTACTTGACAGAAAGAGACCCCAAGTTTCT 2184
Query 1989 CGCCTTCCTCGAGTCTGCT 2007
||| |||||||||||||||
Sbjct 2185 CGCATTCCTCGAGTCTGCT 2203
Score = 512 bits (277), Expect = 5e-144
Identities = 480/574 (84%), Gaps = 30/574 (5%)
Strand=Plus/Plus
Query 90 AATCGAAGACCTAGGGGTCTTCCCATCCAGTATGAGTTCACGCCGGCGAATCGTCAAGCC 149
|||||||| || || |||| ||||| ||| || |||||||||| || || ||||| ||||
Sbjct 112 AATCGAAGGCCCAGTGGTCATCCCAGCCACTACGAGTTCACGCTGGTGATTCGTCCAGCC 171
Query 150 CCTCTTCAAGATTCTGAACAAGAGCCGATTGCACAGCCTCCAACGGGTCCAACCATCAGG 209
|| |||||||||| |||||| | |||| |||||||||| ||||||||||| || |||||
Sbjct 172 CCGCTTCAAGATTTTGAACATCATCCGACTGCACAGCCTTCAACGGGTCCATCCGTCAGG 231
Query 210 GACTATCCTCCCCCGACGCAACTTTTCCAGTCAGGCGAAGGATCTCCTCGC--A------ 261
||||||||||| ||||||||||||||||||||||||||||| ||||||||| |
Sbjct 232 GACTATCCTCCTCCGACGCAACTTTTCCAGTCAGGCGAAGGGTCTCCTCGCGGATCTTGT 291
Query 262 ----------GATCTGGCTCGACTCCATTTCGAGCATCCGGATCTACTCAACCTAGATCT 311
||||||| ||||||| ||| |||||||||| || |||||||||||||||
Sbjct 292 TCTCCTCGTGGATCTGGATCGACTCTGTTTTGAGCATCCGGCTCGACTCAACCTAGATCT 351
Query 312 GGAGGATCTGTTCATCGTCTAGCCTCCAAGTTCAA-ACAATCAGTCTCCAGCGCCGGTTC 370
|||||||||||||||||||||||||| | | | | |||||| || | |||| ||||||
Sbjct 352 GGAGGATCTGTTCATCGTCTAGCCTCTACGG-CGAGACAATC--TC-C-AGCGGCGGTTC 406
Query 371 AACGGGAA-GCCTCCAATCAGTCTCCAGCGCCGGTTCAACGGGAAGCCTCAAATCCTCCA 429
| | ||| ||||||||||||||| ||||| ||||||||| ||||| || ||||||| |
Sbjct 407 A-CAAGAATGCCTCCAATCAGTCTATAGCGCTGGTTCAACGAGAAGCATCCAATCCTCTA 465
Query 430 CCTCGGCAGGCGTCAAATCCTCCACCTCGAGCCTCTGTATCACATCACAGCTCTCAAGCT 489
| || ||| || |||||||||| ||||||||||| |||||| ||||||||||||||||||
Sbjct 466 CTTCCGCAAGCCTCAAATCCTCTACCTCGAGCCTATGTATCTCATCACAGCTCTCAAGCT 525
Query 490 CAAAACTCACATGCGGAAGAAGATGAAGATGAGGAAGCTGAGTTTGAGGCTGAT-TATGA 548
||||||||||| ||||| |||||||||||||| || |||||||||| ||||||| | |||
Sbjct 526 CAAAACTCACACGCGGAGGAAGATGAAGATGATGATGCTGAGTTTGTGGCTGATCT-TGA 584
Query 549 AAGGGAATCAACTCTCCCTGAAGATTCGCTTGCCACTCTCCATGAGTTGCTT-CTCCGGC 607
||||||||||||||||||||||| || |||||| | ||| ||||| ||||| | || ||
Sbjct 585 AAGGGAATCAACTCTCCCTGAAGCTTTGCTTGCAAATCTACATGACATGCTTGC-CCAGC 643
Query 608 CAGGACGTGAGAAGTATACAACGGTCATCTCTCC 641
|||| |||||||||||||||||||| ||||||||
Sbjct 644 CAGGCCGTGAGAAGTATACAACGGTTATCTCTCC 677
> AT4G06570.1 | Symbols: | transposable element gene | chr4:3518688-3520916
FORWARD LENGTH=2229
Length=2229
Score = 1676 bits (907), Expect = 0.0
Identities = 1238/1390 (89%), Gaps = 53/1390 (4%)
Strand=Plus/Plus
Query 642 AGTAGATTAGGTTTAGGGTTAATATTGAGTAATGTGTGTGTGTATCTGCTAAGTAGATTA 701
||| |||||||| || ||||||||||||||| ||||||| |||||||| |||||
Sbjct 846 AGTTGATTAGGTGAAGCGTTAATATTGAGTAA------TGTGTATATGCTAAGTTGATTA 899
Query 702 GGTGTGTATATGGTAAGCTGAGTATATTAGGTTTAGGGTTAATATTGAGTAATATGTGTG 761
||| |||||||||||||||||||| ||||||||||||||||||||||||||||| ||||
Sbjct 900 GGTTTGTATATGGTAAGCTGAGTAGATTAGGTTTAGGGTTAATATTGAGTAATA--TGTG 957
Query 762 TGTATGGTAAGCTGAGTAGATGCTAATTGGTTTATGTAATTGTAGGTTTGGTCACGACAA 821
|| | || | | ||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 958 TG-A--GT----TTA-TAGATGCTAATTGGTTTATGTAATTGTAGGTTTGGTCACGAAAA 1009
Query 822 TGGTAAGCTGACCCGGAAGATCACAAAGGTATTCACAAACAAGTTTAATGGGCCATATTA 881
||||||| |||||| |||||||||||||||||| | |||||||||| |||||||||||||
Sbjct 1010 TGGTAAGATGACCCAGAAGATCACAAAGGTATTTAAAAACAAGTTTGATGGGCCATATTA 1069
Query 882 CAATTGGAGTTGTGTACCTACTGAAAGAAGACACAAATACTTCCTCGAATTCG-CG---- 936
|| |||||| | ||||||||| |||| |||||||||||||||||||||||||| ||
Sbjct 1070 CAGTTGGAGCTATGTACCTACAGAAA-AAGACACAAATACTTCCTCGAATTCGCCGTAAA 1128
Query 937 GTAA-----A-----T--TAA---CTTCTATTGTCTGTATCCATTTGGTTTGGTTTGGTT 981
||| | | ||| |||||||||| |||||||||||||||||||||||||
Sbjct 1129 TTAACTTTTATCTCCTAGTAATCTCTTCTATTGTTTGTATCCATTTGGTTTGGTTTGGTT 1188
Query 982 GTTTGATCACTAACATCAAACTCTCCTCTTGTTTTATAGAAAACACACACATGGCATCCA 1041
|||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||
Sbjct 1189 GTTTGATCACTAACATCAAATTCTCCTCTTGTTTTATAGAAAACACACACTTGGCATCCA 1248
Query 1042 TCACTGACCGGTGTAATTGAAGAGAAATTTTACAAAATATGTCAGCTGCGTATGAAGGAC 1101
|||||||| |||||||||| ||| ||||| ||||||||||||||||||||||||||||||
Sbjct 1249 TCACTGACTGGTGTAATTGTAGAAAAATTCTACAAAATATGTCAGCTGCGTATGAAGGAC 1308
Query 1102 ATGGTTTCTAAGGCTTGCTCAAAACGAGCCACTGAGAGACCGCCATGGATTGAGAAGACA 1161
|||||||||||||||||| |||||| | ||| |||| || ||||||||||||||||||
Sbjct 1309 ATGGTTTCTAAGGCTTGCGCAAAACAAACCAATGAGCTTCCACCATGGATTGAGAAGACA 1368
Query 1162 TTGTGGAAGGAAATGTGTGAGTATTTGGACACAGAAGAAGCCCTTGCCAAGAGTTCAACC 1221
||||||||||||||||||| ||||| |||||||||||||| | |||||||||||| ||||
Sbjct 1369 TTGTGGAAGGAAATGTGTGTGTATTGGGACACAGAAGAAGTCATTGCCAAGAGTTAAACC 1428
Query 1222 ACATCAGCA-GCTCGAATGTCTGACCGTAATGGTCTTGGTCCTCACAAGCATGTATCGGG 1280
||||| ||| | ||||||||||||||||||||||||||| ||||| || |||||||||||
Sbjct 1429 ACATCCGCAAG-TCGAATGTCTGACCGTAATGGTCTTGGCCCTCAAAAACATGTATCGGG 1487
Query 1281 GCCAAAGTCTTTCTTACAAATCGAGCAAGAGATGGTAAGTTACATCAAGCACTCTTGTTT 1340
| ||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||
Sbjct 1488 GACAAAGTCTTTCTTACAAATCGAGTAAGAGATTGTAAGTTACATCAAGCACTCTTGTTT 1547
Query 1341 ATTTATTAAGAATTTAAAtttttttGTGAACAACATTTCAGGAAATTGAGCTGGGAAGAC 1400
||||||||||||| | |||| |||||||||||||||||||||||||||||||| ||||||
Sbjct 1548 ATTTATTAAGAATCTGAATTGTTTTGTGAACAACATTTCAGGAAATTGAGCTGAGAAGAC 1607
Query 1401 CACCTACTATTGGTGAGATATTCATTAGGACTCATACCAAAAAAGATGGGA-GTTTTGTT 1459
||||||||||| |||||||||| ||||||||||||||||||||||||||| ||| |||
Sbjct 1608 AACCTACTATTGTTGAGATATTCCTTAGGACTCATACCAAAAAAGATGGGACGTT--GTT 1665
Query 1460 GATAGGAAGGCGCAGGAAATTCATGAGGCATATTTGAA-GAACAAGGAAGCTAAGTTGGC 1518
|| | |||| ||| ||||||||||||||||||||| | || |||||||||||||||||
Sbjct 1666 GACACGAAGATGCAAGAAATTCATGAGGCATATTTGTATGA-CAAGGAAGCTAAGTTGGT 1724
Query 1519 TGCCCTTGTGAATGATGAAGGGTCTGATGGTACATCCCGTCGATCAGAACTATCTCAAGA 1578
| |||||| |||||||||||||||||||||||| |||||||||| |||||||||||||||
Sbjct 1725 TCCCCTTGAGAATGATGAAGGGTCTGATGGTACTTCCCGTCGATTAGAACTATCTCAAGA 1784
Query 1579 GGAGGATGATGAGATCTTCCTTCTGGTAATGTGGTTGATCCTCtttttttttATTATTAT 1638
||| ||||||||||| ||||||| |||||||||||| || || |||||||||| |||
Sbjct 1785 GGATGATGATGAGATTTTCCTTCAGGTAATGTGGTTAATACT-TTTTTTTTTA--ATT-- 1839
Query 1639 TATCACTTACTTCATCTTTTAAGAACTAATCCTCTTGTCttttttttGCAGTCAACTGTC 1698
||||| |||||||||||||||||||||||||||||||||| |||||| |||||||||
Sbjct 1840 ---CACTTCCTTCATCTTTTAAGAACTAATCCTCTTGTCTTTTGTTTGCATTCAACTGTC 1896
Query 1699 ACAAACGAGAGAGGGGTATACTTCGGAATGGGAAGCTTAGGGAGGTACATCAATGGGAAG 1758
||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1897 ACAAACGAGAGAGAGGTATACTTCGGAATGGGAAGCTTAGGGAGGTACATCAATGAGAAG 1956
Query 1759 AGGAAGTACCCAGGAAGCAGTTCTGCTTTCACTTCCTT-GCAGTCACAGCTTGAGGAAGC 1817
||||||||||| ||| || || ||||||||||||||| ||| |||||| |||||||||
Sbjct 1957 CGGAAGTACCCATGAAACACTTATGCTTTCACTTCCTTTGCAATCACAGTTTGAGGAAGT 2016
Query 1818 CAACCGCAAGATAGAAGAACAAGCGAATCTCCAAGCACATCGGGAGGCAGAGGCATTGCG 1877
|||||||||||||||||||||||||| ||||||| |||||| ||||||||| ||||||
Sbjct 2017 CAACCGCAAGATAGAAGAACAAGCGACTCTCCAATTACATCGTAAGGCAGAGGAATTGCG 2076
Query 1878 GGTGAAAGCTGAGCAAGCAGAGATCAAGCGTGTTGCTAATGAGCAACAAGCAGAGATCAA 1937
||| |||| |||||||||||| |||||||||||||||||| |||||||| ||||||||||
Sbjct 2077 GGTAAAAGTTGAGCAAGCAGATATCAAGCGTGTTGCTAATAAGCAACAAACAGAGATCAA 2136
Query 1938 ACACTTGAGGATGGTGAAGAAGTACTTGACCGAAACTGACCCCAAGTTTCTCGCCTTCCT 1997
|||||||||||||||||||||||||||||| |||||| |||||| |||||||| |||||
Sbjct 2137 ACACTTGAGGATGGTGAAGAAGTACTTGACAGAAACTAACCCCATGTTTCTCGAATTCCT 2196
Query 1998 CGAGTCTGCT 2007
||||||||||
Sbjct 2197 CGAGTCTGCT 2206
Score = 462 bits (250), Expect = 5e-129
Identities = 346/392 (88%), Gaps = 8/392 (2%)
Strand=Plus/Plus
Query 252 TCTCCTCGCAGATCTGGCTCGACTCCATTTCGAGCATCCGGATCTACTCAACCTAGATCT 311
||||||||||||||||| ||||||| |||||||||||||| || |||||||||||||||
Sbjct 321 TCTCCTCGCAGATCTGGATCGACTCTGTTTCGAGCATCCGGCTCGACTCAACCTAGATCT 380
Query 312 GGAGGATCTGTTCATCGTCTAGCCTCCAAGTTCAAACAATCAGTCTCCAGCGCCGGTTCA 371
|||||||| |||||| ||||||||||| ||| |||| | | ||||||| | | |||||
Sbjct 381 CGAGGATCTATTCATCATCTAGCCTCCACGTTGAAAC-A--A-TCTCCAGAGGCAGTTCA 436
Query 372 ACGGGAAGCCTCCAATCAGTCTCCAGCGCCGGTTCAACGGGAAGCCTCAAATCCTCCAC- 430
|| |||||||||||||||||||||||| |||||||||| ||||| || ||||||| ||
Sbjct 437 ACCTGAAGCCTCCAATCAGTCTCCAGCGGCGGTTCAACGAGAAGCATCCAATCCTCTACT 496
Query 431 CTCGGCAGGCGTCAAATCCTCCACCTCGAGCCTCTGTATCACATCACAGCTCTCAAGCTC 490
| || | |||||||||||||||||||||| || ||||||||||||||||||||||||||
Sbjct 497 TTAGG-AAGCGTCAAATCCTCCACCTCGAGTCTTTGTATCACATCACAGCTCTCAAGCTC 555
Query 491 AAAACTCACATGCGGAAGAAGATGAAGATGAGGAAGCTGAGTTTGAGGCTGATTATGAAA 550
|||||||||| ||||| ||||||||||||||||||||||||||||||||||||| |||||
Sbjct 556 AAAACTCACACGCGGAGGAAGATGAAGATGAGGAAGCTGAGTTTGAGGCTGATTTTGAAA 615
Query 551 GGGAATCAACTCTCCCTGAAGATTCGCTTGCCACTCTCCATGAGTTGCTT-CTCCGGCCA 609
||||||||||| |||||||||||| |||||| ||||| ||||||||||| | || ||||
Sbjct 616 GGGAATCAACTATCCCTGAAGATTTGCTTGCAACTCTATATGAGTTGCTTGC-CCAGCCA 674
Query 610 GGACGTGAGAAGTATACAACGGTCATCTCTCC 641
| | |||||| ||||||||||||||||||||
Sbjct 675 AGCCATGAGAAATATACAACGGTCATCTCTCC 706
Score = 69.4 bits (37), Expect = 1e-10
Identities = 39/40 (98%), Gaps = 0/40 (0%)
Strand=Plus/Plus
Query 642 AGTAGATTAGGTTTAGGGTTAATATTGAGTAATGTGTGTG 681
||||||||||||||||||||||||||||||||| ||||||
Sbjct 920 AGTAGATTAGGTTTAGGGTTAATATTGAGTAATATGTGTG 959
> AT2G12420.1 | Symbols: | transposable element gene | chr2:5027376-5029321
REVERSE LENGTH=1946
Length=1946
Score = 1650 bits (893), Expect = 0.0
Identities = 1260/1423 (89%), Gaps = 81/1423 (6%)
Strand=Plus/Plus
Query 642 AGTAGATTAGG-TTTAGGGTTAATATTGAGTAATGTGTGTGTGTAT--CTGCTAAGTAGA 698
||||||||||| |||||||||||||||||||||||||||||| ||| |||||||| ||
Sbjct 473 AGTAGATTAGGTTTTAGGGTTAATATTGAGTAATGTGTGTGTATATAGATGCTAAGTTGA 532
Query 699 TTAGGTGTGTATATGGTAAGCTGAGTATATTAGGTTTAGGGTTAATATTGAGTAATATGT 758
|| |||||||||||||||||||| ||| |||| |||||||| ||||||||||||||||||
Sbjct 533 TTGGGTGTGTATATGGTAAGCTGTGTAGATTACGTTTAGGGGTAATATTGAGTAATATGT 592
Query 759 G--TGTGTAT-G--G-TAAGCTGAGTA-G-ATGCTAATTGGTTTATGTAATTGTAGGTTT 810
| ||| ||| | | |||| ||| || | | ||||||||||||||||||||||| |||
Sbjct 593 GTATGTATATAGATGCTAAGTTGATTAGGTCTTCTAATTGGTTTATGTAATTGTAGATTT 652
Query 811 GGTCACGACAATGG----TAAGCTGACCCGGAAGATCACAAAGGTATTCACAAACAAGTT 866
|||||||||||||| |||| ||||| ||||||| ||||||||||||||||||||||
Sbjct 653 GGTCACGACAATGGTAATTAAGTTGACCTGGAAGATTGCAAAGGTATTCACAAACAAGTT 712
Query 867 TAATGGGCCA-TATTACAATTGGAGTTGTGTACCTACTGAAAGAAGACACAAATACTTCC 925
| |||||||| | ||||| |||||| |||||| ||||||||| |||||| ||||||||||
Sbjct 713 TGATGGGCCATTTTTACAGTTGGAGCTGTGTATCTACTGAAA-AAGACATAAATACTTCC 771
Query 926 TCGAATTCGCGGT-AA-----A-------TTAA-C--TT-CTATTGTCTGTATCCATTTG 968
|||||||| | || || | |||| | || ||||||||| ||||||||||
Sbjct 772 TCGAATTCAC-GTAAACTTCTATCTCCTGTTAATCTTTTACTATTGTCTATATCCATTTG 830
Query 969 GTTTGGTTTGGTTGTTTGATCACTAACATCAAACTCTCCTC-TTGTTTTATAGAAAACAC 1027
||||||||| ||||||||||||||||||||||||||||||| || |||| ||||||||||
Sbjct 831 GTTTGGTTTCGTTGTTTGATCACTAACATCAAACTCTCCTCTTTTTTTTGTAGAAAACAC 890
Query 1028 ACACATGGCATCCATCACTGACCGGTGTAATTGAAGAGAAATTTTACAAAATATGTCAGC 1087
||||||| ||||||||||| |||||| |||||||||||||||| |||||||||||| |||
Sbjct 891 ACACATGACATCCATCACTAACCGGTATAATTGAAGAGAAATTCTACAAAATATGTTAGC 950
Query 1088 TGCGTATGAAGGACATGGTTTCTAAGGCTTGCTCAAAACGAGCCACTGAG-AGACCGCCA 1146
|||||||||||||||||||||||||||||||||||||| |||||| | || | |||||||
Sbjct 951 TGCGTATGAAGGACATGGTTTCTAAGGCTTGCTCAAAATGAGCCAATTAGCA-ACCGCCA 1009
Query 1147 TGGATTG-AGAAGACATTGTGGAAGGAAATGTGTGAGTATTTG-GACACAGAAGAAGCCC 1204
||||||| || |||||||||||||||||||||||||||| ||| |||||||||||||||
Sbjct 1010 TGGATTGAAG-AGACATTGTGGAAGGAAATGTGTGAGTA-TTGAGACACAGAAGAAGCCA 1067
Query 1205 TTGCCAAGAGTT-CAACCACATCAGCAGCTCGAATGTCTGACCGTAATGGTCTTGGTCCT 1263
|||||||||||| ||| |||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1068 TTGCCAAGAGTTCCAATCACATCAGCAGCTCGAATGTCTGACCGTAATGGTCTTGGTTCT 1127
Query 1264 CACAAGCATGTATCGGGGCCAAAGTCTTTCTTACAAATCGAGCAAGAGATGGTAAGTTAC 1323
|||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1128 CACAAGCATGTATCAGGGCCAAAGTCTTTCTTATAAATCGAGCAAGAGATGGTAAGTTAC 1187
Query 1324 ATCAAGCACTCTTGTTTATTTA--T--T----------AAGAATTTAAAtt-tt-ttt-G 1366
|||||||||||||||||||||| | | ||||| || |||| || ||| |
Sbjct 1188 ATCAAGCACTCTTGTTTATTTACATAATGTTTTTTCTTAAGAAGTTGAATTGTTGTTTTG 1247
Query 1367 TGAACAACATTTCAGGAAATTGAGCTGGGAAGACCACCTACTATTGGTGAGATATT-CAT 1425
||||||||||||||||||||| |||| |||||||||||| | ||||||||||||| | |
Sbjct 1248 TGAACAACATTTCAGGAAATTTAGCTCAGAAGACCACCTAGTGTTGGTGAGATATTTC-T 1306
Query 1426 TAGGACTCATACCAAAAAAGATGGGAGTTTTGTTGATAGGAAGGCGCAGGAAATTCATGA 1485
|||||||||||||||||||||||||| ||||||||||||||||||| ||| |||||||||
Sbjct 1307 TAGGACTCATACCAAAAAAGATGGGACTTTTGTTGATAGGAAGGCGTAGGTAATTCATGA 1366
Query 1486 GGCATATTTGAAGAACAAGGAAGCTAAGTTGGCTGCCCTTGTGAATGATGAAGGGTCTGA 1545
||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||
Sbjct 1367 GGCATATTTGAAGAACAAGGAAGCTAAGTTGGCTGCCGTTGAGAATGATGAAGGGTCTGA 1426
Query 1546 TGGTACATCCCGTCGATCAGAACTATCTCAAGAGGAGGATGATGAGATCTTCCTTCTGGT 1605
|||||| |||| | ||||| |||||||||||||| ||||||||||||||||||||| |||
Sbjct 1427 TGGTACTTCCCATGGATCATAACTATCTCAAGAGAAGGATGATGAGATCTTCCTTCAGGT 1486
Query 1606 AATGTGGTTGATCCTCtttttttttATTATTATTATCACTTACTTCATCTTTTAAGAACT 1665
||||||||| ||||| |||||| || | | || ||||||||||||||||||||||||||
Sbjct 1487 AATGTGGTTAATCCT-TTTTTTCTT-TG-T-ATCATCACTTACTTCATCTTTTAAGAACT 1542
Query 1666 AATCCTCTTGTCttttttttGCAGTCAACTGTCACAAACGAGAGAGGGGTATACTTCGGA 1725
||||||||||||| || | || ||||||||||| |||| ||||||||||||
Sbjct 1543 AATCCTCTTGTCT--------CA---A-CTATCACAAACGAGTGAGGCGTATACTTCGGA 1590
Query 1726 ATGGGAAGCTTAGGGAGGTACATCAATGGGAAGAGGAAGTACCCAGGAAGCAGTTCTGCT 1785
||||||||||||||||||| ||| ||||||||| ||||||||||| ||||||||| ||||
Sbjct 1591 ATGGGAAGCTTAGGGAGGT-CATTAATGGGAAGCGGAAGTACCCAAGAAGCAGTTATGCT 1649
Query 1786 TTCACTTCCTTGCAGTCACAGCTTGAGGAAGCCAACCGCAAGATAGAAGAACAAGCGAA- 1844
|||||||||||||| ||||| |||||||||||||| |||||||||||||||||||| ||
Sbjct 1650 TTCACTTCCTTGCAATCACATCTTGAGGAAGCCAATCGCAAGATAGAAGAACAAGC-AAC 1708
Query 1845 TCTCCAAGCACATCGGGAGGCAGAGGCATTGCGGGTGAAAGCTGAGCAAGCAGAGATCAA 1904
||||||||||||||| ||||||||||||||||||||||||||||||||| || |||||||
Sbjct 1709 TCTCCAAGCACATCGTGAGGCAGAGGCATTGCGGGTGAAAGCTGAGCAACCAAAGATCAA 1768
Query 1905 GCGTGTTGCTAATGAGCAACAAGCAGAGATCAAACACTTGAGGATGGTGAAGAAGTACTT 1964
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1769 GCGTGTTGCTAATGAGCAACAAGAAGAGATCAAACACTTGAGGATGGTGAAGAAGTACTT 1828
Query 1965 GACCGAAACTGACCCCAAGTTTCTCGCCTTCCTCGAGTCTGCT 2007
|||| |||||||||| | |||||||| ||||||||||||||||
Sbjct 1829 GACCAAAACTGACCCTAGGTTTCTCGTCTTCCTCGAGTCTGCT 1871
> AT4G06627.1 | Symbols: | transposable element gene | chr4:3604916-3606209
FORWARD LENGTH=1294
Length=1294
Score = 1539 bits (833), Expect = 0.0
Identities = 1110/1239 (90%), Gaps = 38/1239 (3%)
Strand=Plus/Plus
Query 793 TTATGTAATTGTAGGTTTGGTCACGACAATGGTAAGCTGACCCGGAAGATCACAAAGGTA 852
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1 TTATGTAATTGTAGGTTTGGTCACGACAATGGTAAGCTGACCCAGAAGATCACAAAGGTA 60
Query 853 TTCACAAACAAGTTTAATGGGCCATATTACAATTGGAGTTGTGTACCTACTGAAAGAAGA 912
|||| |||||||||| ||||||||| ||||| |||||| |||||||||||||||||||||
Sbjct 61 TTCATAAACAAGTTTGATGGGCCATTTTACAGTTGGAGATGTGTACCTACTGAAAGAAGA 120
Query 913 CACAAATACTTCCTCGAATTCGCGGTAAATTAA---C--T-TC-TATT-GTCTGTATCCA 964
|||| ||||||||||||||||| |||||| ||| | | || |||| ||| | | ||
Sbjct 121 CACATATACTTCCTCGAATTCGAGGTAAAGTAAGTTCTATCTCTTATTAATCTCT-TACA 179
Query 965 TTTGGTTTGGTTTGGTTGTTTGATCACTAACATCAAACTCTCCTCTTGTTTTATAGAAAA 1024
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
Sbjct 180 TTTGGTTTGGTTTGGTTGTTTGATCACTAACATCAAACTCTCCTCTTGTTTTGTAGAGTA 239
Query 1025 CACACACATGGCATCCATCACTGACCGGTGTAATTGAAGAGA-AATT-TTACAAAATATG 1082
|||||||||||||||||||| ||||||||||| ||||| | | | || || ||||||||
Sbjct 240 CACACACATGGCATCCATCAGTGACCGGTGTAGTTGAATA-ATAGTTCTT-TAAAATATG 297
Query 1083 TC-AGCTGCGTATGAAGGACATGGTTTCTAAGGCTTGCTCAAAACGAGCCACTGAGAGAC 1141
|| | | ||||||||||||||||||||||||||||||| ||| ||| |||| |||| |||
Sbjct 298 TCAAAC-GCGTATGAAGGACATGGTTTCTAAGGCTTGCGCAAGACGTGCCAATGAGCGAC 356
Query 1142 CGCCATGGATTGAGAAGACATTGTGGAAGGAAATGTGTGAGTATTTG-GACACAGAAGAA 1200
||||||||||||||||||||||||||||||||||||||| ||| ||| ||||||||||||
Sbjct 357 CGCCATGGATTGAGAAGACATTGTGGAAGGAAATGTGTGCGTA-TTGAGACACAGAAGAA 415
Query 1201 GCCCTTGCCAAG-AGTTCAACCACATCAGCAGCTCGAATGTCTGACCGTAATGGTCTTGG 1259
||| || || || |||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 416 GCCATTACC-AGAAGTTCAACCACATCAGTAGCTCGAATGTCTGACCGTAATGGTCTTGG 474
Query 1260 TCCTCACAAGCATGTATCGGGGCCAAAGTCTTTCTTACAAATCGAGCAAGAGATGGTAAG 1319
||||||||| ||||||||||||||||||||||||||||| || |||||||||||||||||
Sbjct 475 TCCTCACAAACATGTATCGGGGCCAAAGTCTTTCTTACAGATTGAGCAAGAGATGGTAAG 534
Query 1320 TTACA-----TCAAGCACT-CTTGTTTATTTATTAAGAATTTAAAtttttttGTGAACAA 1373
||||| | | | | || || |||||||||| | | |||| ||||||||||||
Sbjct 535 TTACATTTGTTTATTTAATGAATGATT-TTTATTAAGAGTCTGAATTGTTTTGTGAACAA 593
Query 1374 CATTTCAGGAAATTGAGCTGGGAAGACCACCTACTATTGGTGAGATATTCATTAGGACTC 1433
|||||||| |||||||||| |||||||||||||||||||||||| ||||| ||| |||||
Sbjct 594 CATTTCAGAAAATTGAGCTAGGAAGACCACCTACTATTGGTGAGGTATTCGTTAAGACTC 653
Query 1434 ATACCAAAAAAGATGGGAGTTTTGTTGATAGGAAGGCGCAGGAAATTCATGAGGCATATT 1493
|||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||
Sbjct 654 ATACCAAAAAAGATGGGACTTTTGTTGATAAGAAGGCGCAGGAAATTCATGAGGCATATT 713
Query 1494 TGAAGAACAAGGAAGCTAAGTTGGCTGCCCTTGTGAATGATGAAGGGTCTGATGGTACAT 1553
|||||||||||||||||||||||||||||| || ||||||||||||||| || ||||| |
Sbjct 714 TGAAGAACAAGGAAGCTAAGTTGGCTGCCCGTGAGAATGATGAAGGGTCAGACGGTACTT 773
Query 1554 CCCGTCGATCAGAACTATCTC-AAGAGGAGGATGATGAGATCTTCCTTCTGGTAATG-TG 1611
||||||||||||||||||||| || ||||||| |||||| ||||||||| ||| ||| |
Sbjct 774 CCCGTCGATCAGAACTATCTCTAA-AGGAGGAGGATGAGGTCTTCCTTCAGGTCATGGTC 832
Query 1612 GTTGATCCTCtttttttttATTAT-TATTATCACTTACTTCATCTTTTAAG-AACTAATC 1669
||| || |||||| ||| || | ||||||||||| ||||||||||| | || ||||
Sbjct 833 -TTGGTCTTCTTTTATTTC-TTCTCTATTATCACTTGCTTCATCTTTTCTGCAA-TAATT 889
Query 1670 CTCTTGTCttttttttGCAGTCAACTGTCACAAACGAGAGAGGGGTATACTTCGGAATGG 1729
||| ||||||| ||||||||||||| ||||||||||||||||| ||||||| |||||||
Sbjct 890 CTC--GTCTTTTGTTTGCAGTCAACTATCACAAACGAGAGAGGGATATACTTTGGAATGG 947
Query 1730 GAAGCTTAGGGAGGTACATCAATGGGAAG-AGGAAGTACCCAGGAAGCAGTTCTGCTTTC 1788
||||||||||||||||||||||||||||| || ||||||||||| |||| || |||||||
Sbjct 948 GAAGCTTAGGGAGGTACATCAATGGGAAGCAG-AAGTACCCAGGCAGCAATTTTGCTTTC 1006
Query 1789 ACTTCCTTGCAGTCACAGCTTGAGGAAGCCAACCGCAAGATAGAAGAACAAGCGAATCTC 1848
||| ||||||| ||||| ||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1007 ACTACCTTGCAATCACAACTTGAGGAAGCCAACCGCAAGATAGAAGAACAAGCGACTCTC 1066
Query 1849 CAAGCACATCGGGAGGCAGAGGCATTGCGGGTGAAAGCTGAGCAAGCAGAGATCAAGCGT 1908
||||||||||| |||| |||||||||||| |||||||||||||||||||| |||||||||
Sbjct 1067 CAAGCACATCGTGAGGTAGAGGCATTGCGCGTGAAAGCTGAGCAAGCAGATATCAAGCGT 1126
Query 1909 GTTGCTAATGAGCAACAAGCAGAGATCAAACACTTGAGGATGGTGAAGAAGTACTTGACC 1968
||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1127 GTTGCTATTGAGCAACAAGCAGAGATCAAACACTTGAGGATGGTTAAGAAGTACTTGACA 1186
Query 1969 GAAACTGACCCCAAGTTTCTCGCCTTCCTCGAGTCTGCT 2007
||||||||||||||||||||||| ||||||||| |||||
Sbjct 1187 GAAACTGACCCCAAGTTTCTCGCATTCCTCGAGACTGCT 1225
> AT1G38140.1 | Symbols: | transposable element gene | chr1:14300842-14302929
FORWARD LENGTH=2088
Length=2088
Score = 403 bits (218), Expect = 3e-111
Identities = 609/785 (78%), Gaps = 77/785 (10%)
Strand=Plus/Plus
Query 806 GGTTTGGTCACGACAATGGTAAGCTGACCCGGAAGATCACAAAGGTATTCACAAACAAGT 865
|||||||| | ||||| ||| | | || || |||||||||| || || ||||||||||
Sbjct 878 GGTTTGGTAAGGACAAGGGT-ATTTTACTAGGTAGATCACAAAAGTTTTTACAAACAAGT 936
Query 866 TTAATGGGCCATATTACAATTGGAGTTGTGTACCTACTGAAAGAAGACACAA-ATACTTC 924
|| ||| ||||||||||| |||||| ||||| ||||||| ||||||| | || |||||||
Sbjct 937 TTGATGAGCCATATTACAGTTGGAGATGTGTGCCTACTGCAAGAAGAGA-AAGATACTTC 995
Query 925 CTCGAATTCGCGGTAAATTAACTTCTATTGTCTGTATCCA--TT-T-GGTTTGGTTTGGT 980
||||||||| ||| | |||||||| | || | || | || | |||| ||||||
Sbjct 996 TTCGAATTCG-GGT-GA--AACTTCTA-TCTC-CTCTCAATTTTCTACTTTTGTTTTGGT 1049
Query 981 TGTTTGATCACTAACATCAAACTCTCCTCTTGTTTTATAGAAAACACACAC-A-TGGCAT 1038
| ||| |||||||||||||||||||| ||||||||| | |||||||| || | ||| ||
Sbjct 1050 TATTTCATCACTAACATCAAACTCTCTTCTTGTTTTGCAAAAAACACATACAATTGGGAT 1109
Query 1039 CCATCACTGACCGGTGTAATTGAAGAGAAATTTTACAAAATATGTCAGCTGCGTATGAAG 1098
|| ||||| || |||| ||||||| |||| || || || ||||| |||||||||||
Sbjct 1110 CCCTCACTTACTAGTGTGATTGAAGCCAAATACTATAAGATTTGTCAACTGCGTATGAAA 1169
Query 1099 GACATGGTTTCTAAGGCTTGCTCAAAACGA-GCCACTGAGAG--ACCGCCATGGATTGAG 1155
|||||||||| ||| | || | || | || ||||| ||| | |||||||||
Sbjct 1170 GACATGGTTTGTAA-G--TG-----AGGGAGGTTAC-GAGAGCAACCTCTTTGGATTGAG 1220
Query 1156 AAGACATTGT-GGAAGGAAATGTGTGAGTATTTGGACACAGAAGAAGCCCTTGCCAAGAG 1214
|| ||||||| |||| ||||||||| | |||| |||||||||||||||| || ||||
Sbjct 1221 AACACATTGTGGGAA-GAAATGTGTAACTATTGGGACACAGAAGAAGCCAAAGCAAAGAT 1279
Query 1215 TTCAACCACATCAGC-AGCTCGAATGTCTGACCGTAATGGTCTTGGTCCTCACAAGCATG 1273
|| ||| |||||| | | ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1280 TTTAACTACATCATCTA-CTCGAATGTCTGACCGTAATGGTCTTGGTCCTCACAAGCATG 1338
Query 1274 TATCGGGGCCA--AAGTCT-TTCTTACAAATCGAGCAAGAGATGGTAAGTT-A--CA-TC 1326
||||||| | | |||| | |||||||||||| | |||||| ||||||||| | || |
Sbjct 1339 TATCGGG-C-ATGAAGT-TGTTCTTACAAATCAAACAAGAGGTGGTAAGTTCAAACACTG 1395
Query 1327 --AAGCACTC-TT--GTTTATTTAT-TAAGA---ATT-TAA-A--tt--ttt-ttGTGA- 1369
|| || | || ||||| |||| ||| | || ||| | || ||| || ||
Sbjct 1396 TGAA-CATTTGTTTTGTTTACTTATATAATATCCATCCTAAGAAGTTGATTTGTTTTGTT 1454
Query 1370 -ACAACATTTCAGGAAATTGAGCTGGGAAGACCACCTACTATTGGTGA-GATATTCATTA 1427
||||||||||||||| |||| | | |||||||||||| | | ||| |||
Sbjct 1455 TACAACATTTCAGGAAGTTGA-C--------C----TACTATTGGTGAAGTT-TTCCTTA 1500
Query 1428 GGACTCATACCAAAAAAGATGGGAGTTTTGTTGATAGGAAGGCGCAGGAAATTCATGAGG 1487
| |||||||||||||||||||||| |||||| |||||||||| | ||||| ||||||||
Sbjct 1501 GAACTCATACCAAAAAAGATGGGACTTTTGTCGATAGGAAGGTGGAGGAAGTTCATGAGT 1560
Query 1488 CATATTTGAAGAACAAGG-AAGCTAAGTTGGCTGCCCTTGTGAATGATGAAGGGTCTGAT 1546
|||| ||||||||||| || ||||||||| |||||||| ||||||||||||| |||
Sbjct 1561 CATAAAAGAAGAACAAGGCAA-CTAAGTTGGTTGCCCTTGAAAATGATGAAGGGTATGAA 1619
Query 1547 GGTAC 1551
|||||
Sbjct 1620 GGTAC 1624
> AT2G05647.1 | Symbols: | transposable element gene | chr2:2104362-2104646
REVERSE LENGTH=285
Length=285
Score = 307 bits (166), Expect = 2e-82
Identities = 216/240 (90%), Gaps = 4/240 (2%)
Strand=Plus/Plus
Query 1761 GAAGTACCCAGGAAGCAGTTCTGCTTTCACTTCCTTGCAGTCACAGCTTGAGGAAGCCAA 1820
||||||||||| |||||||||| ||||||| ||||||| | ||||||||||||||||||
Sbjct 3 GAAGTACCCAGTAAGCAGTTCTTCTTTCACAACCTTGCAATTACAGCTTGAGGAAGCCAA 62
Query 1821 CCGCAAGATAGAAGAACAAGCGAATCTCCAAGCACATCGGGAGGCAGAGGCATTGCGGG- 1879
|| ||||||||| |||||||| | ||| ||||||||||| ||||||||||| |||||||
Sbjct 63 CCTCAAGATAGATGAACAAGCTACTCTACAAGCACATCGTGAGGCAGAGGCTTTGCGGGT 122
Query 1880 TGAAAGCTGAGCAAGCAGAGATCAAGCGTGTTGCTAATGAGCAACAAGCAGAGATCAAAC 1939
|| |||||||||||||||||||||||| ||||| ||||||||||||||||||||||| |
Sbjct 123 TG-CAGCTGAGCAAGCAGAGATCAAGCGGGTTGCAAATGAGCAACAAGCAGAGATCAAGC 181
Query 1940 ACTTGAGGATGGTGAAGAAGTACTTGACCGA-AACTGACCCCAAGTTTCTCGCCTTCCTC 1998
||||||||||||||||||||||||||||| | ||| ||||| || |||||||||||||||
Sbjct 182 ACTTGAGGATGGTGAAGAAGTACTTGACC-ACAACAGACCCAAATTTTCTCGCCTTCCTC 240
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 99497480190
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5