BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg481147
Length=1829
Score E
Sequences producing significant alignments: (Bits) Value
AT2G22840.1 | Symbols: AtGRF1, GRF1 | growth-regulating factor ... 2824 0.0
> AT2G22840.1 | Symbols: AtGRF1, GRF1 | growth-regulating factor
1 | chr2:9728756-9731301 FORWARD LENGTH=1838
Length=1838
Score = 2824 bits (1529), Expect = 0.0
Identities = 1742/1842 (95%), Gaps = 26/1842 (1%)
Strand=Plus/Plus
Query 1 AAGCGATTACCTCCCATGGGAAAAATCTCTGAAGTGATTATTTAGCACtttttttttttt 60
|||||||||||||||||||||||||||||||||||||||||||||||| | |||||
Sbjct 3 AAGCGATTACCTCCCATGGGAAAAATCTCTGAAGTGATTATTTAGCAC---TACTTTTTC 59
Query 61 tttGTCTCCTTCTGAATCCA-TTTTTATGGATCTTGGGGTTCGTGTTTCTGGTCATGAAA 119
|||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||
Sbjct 60 TTTGTCTCCTTCTGAATCCATTTTTTATGGATCTTGGAGTTCGTGTTTCTGGTCATGAAA 119
Query 120 ACGGTTCTTCTCCGGGTCAAACTGAACTCGGATCTGGTTTCAGCAACAAGCAAGAAAGAT 179
|| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 120 CCGTTTCTTCTCCGGGTCAAACTGAACTCGGATCTGGTTTCAGTAACAAGCAAGAAAGAT 179
Query 180 CCGGTTTCGATGGTGAAGATTGCTGGAGAAGTTCAAAGCTCTCAAGAACATCATCAACTG 239
|||||||||||||||||||||||||||||||||||||||||||| | | | |||||||||
Sbjct 180 CCGGTTTCGATGGTGAAGATTGCTGGAGAAGTTCAAAGCTCTCACG-A-A-CATCAACTG 236
Query 240 ATGGATTCTCTTCTTCCTCTGCCTCTGCTAAAACACTGTCGTTTCATCAAGGCATCCCTT 299
||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||
Sbjct 237 ATGGATTCTCTTCTTCCCCTGCCTCTGCTAAAACGCTGTCGTTTCATCAAGGCATCCCTT 296
Query 300 TACTGAGATCTACCACTA-T--TGATCCTCGTAGAGGACAAGAACATATGCTTAGCTTCT 356
|||||||||||||||||| | ||||||||||| |||||||||||| |||||||||||||
Sbjct 297 TACTGAGATCTACCACTATTAATGATCCTCGTAAAGGACAAGAACACATGCTTAGCTTCT 356
Query 357 CTTCTACTTCCGACAAATCAGATGTCTCACCTTATCTTCAGTACTGTAGAAACTCAGGAT 416
||||| |||| | |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 357 CTTCTGCTTCAGGCAAATCAGATGTCTCACCTTATCTTCAGTACTGTAGAAACTCAGGAT 416
Query 417 ATGGTTTAGGAGGAATGATGAACACAAGCAACATGCATGGAAACTTGTTGACAGGCGTAA 476
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 417 ATGGTTTAGGAGGAATGATGAACACAAGCAACATGCATGGAAACTTGTTGACAGGAGTAA 476
Query 477 AAGGACCTTTTTCATTGACTCAATGGGCAGAGCTAGAGCAACAGGCTTTGATCTATAAGT 536
|||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||
Sbjct 477 AAGGACCTTTTTCATTGACTCAGTGGGCAGAGCTAGAGCAACAGGCGTTGATCTATAAGT 536
Query 537 ATATCACAGCCAATGTCCCTGTGCCATCTAGTTTACTTCTCTCTCTCAAGAAATCTTTTT 596
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 537 ATATCACAGCCAATGTCCCTGTTCCATCTAGTTTACTTCTCTCTCTCAAGAAATCTTTTT 596
Query 597 TCCCTTATGGATCTTTGCCTCCTAATTCTTTTGGATGGGGCTCTTTTCATCTGGGCTTTT 656
|||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 597 TCCCTTATGGTTCCTTGCCTCCTAATTCTTTTGGATGGGGCTCTTTTCATCTGGGCTTTT 656
Query 657 CCGGTGGTAACATGGATCCCGAGCCCGGGAGATGTCGCCGGACAGATGGAAAGAAATGGC 716
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 657 CCGGTGGTAACATGGATCCCGAGCCAGGGAGATGTCGCCGGACAGATGGAAAGAAATGGC 716
Query 717 GATGCTCGAGGGACGCTGTTCCCGATCAAAAGTACTGTGAACGACATATTAACAGAGGCC 776
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 717 GGTGCTCGAGGGACGCTGTTCCCGATCAAAAGTACTGTGAACGACATATTAACAGAGGCC 776
Query 777 GCCATCGTTCAAGAAAGCCTGTGGAAGGCCAAAATGGCCACAATACTAATGCTGCCGCCG 836
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 777 GCCATCGTTCAAGAAAGCCTGTGGAAGGCCAAAATGGCCACAATACTAATGCTGCCGCCG 836
Query 837 CT--T-CTGCCGCTGC---TTCTACTGCTGCTGCTGTGTCCAAAGCGGCTGCAGGGACTT 890
|| | |||| ||||| |||||| ||||||||||||||||||||||| || |||||||
Sbjct 837 CTGCTTCTGCTGCTGCCGCTTCTACCGCTGCTGCTGTGTCCAAAGCGGCAGCGGGGACTT 896
Query 891 CAGCTATTGCAATGCGTGGATCAGATAATAACAATAGCCTTACCGCTGCTGTTGGAACAC 950
||||| |||| |||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 897 CAGCTGTTGCGATGCGTGGATCAGATAATAACAATAGCCTTGCCGCTGCTGTTGGAACAC 956
Query 951 ATCATCATGCCAATAATCAATCTACAGATTCTTTGGCTAACAGGGTTCAAAATTCTCGAG 1010
| |||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 957 AACATCATACCAATAATCAATCTACAGATTCTTTGGCTAACAGAGTTCAAAATTCTCGAG 1016
Query 1011 GGGCTTTGGTTTTTCCTGCCACGATGAACTTACAGCCGAAGGAAACTCATCCGAAACAAA 1070
|||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1017 GGGCTTCGGTTTTTCCTGCCACGATGAACTTACAGTCGAAGGAAACTCATCCGAAACAAA 1076
Query 1071 GCAATAATTCTTTTGAATTCGGACTCATCTCCTCTGATTCGTTACTTAATCCGTCACATA 1130
|||||||| | |||||||||||||||||||| ||||||||||||||||||||||| ||||
Sbjct 1077 GCAATAATCCCTTTGAATTCGGACTCATCTCTTCTGATTCGTTACTTAATCCGTCGCATA 1136
Query 1131 AACAAGCCTCTTATGCAAACTCTTCGAAAGGCTTTGGCTCGTATCTTGACTTCAGCAACC 1190
|||||||||| ||||||| |||||| ||||||||||| ||||||||||||||| ||||||
Sbjct 1137 AACAAGCCTCGTATGCAACCTCTTCCAAAGGCTTTGGATCGTATCTTGACTTCGGCAACC 1196
Query 1191 AAGCGAAGCACGCGGGGAATCACCACAATGACGATTCTTGGCCTGAAGAGCTGAAATCGG 1250
|||| |||||||||||||||||| |||||| |||||||||||| ||||||||||||||||
Sbjct 1197 AAGCCAAGCACGCGGGGAATCACAACAATGTCGATTCTTGGCCCGAAGAGCTGAAATCGG 1256
Query 1251 ATTGGACTCAGCTCTCAATGTCAATCCCCATGGCTCCATCATCTCCTGTACAAGATAAAC 1310
|||||||||||||||||||||||||||| ||||||||||| || ||||| ||||||||||
Sbjct 1257 ATTGGACTCAGCTCTCAATGTCAATCCCTATGGCTCCATCTTCCCCTGTTCAAGATAAAC 1316
Query 1311 TAGCACTCTCGCCTTTAAGGTTATCGCGTGAGTTTGACCCTGCGATCCACATGGGATTAG 1370
| |||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1317 TTGCACTCTCACCTTTAAGGTTATCGCGTGAGTTTGACCCCGCGATCCACATGGGATTAG 1376
Query 1371 GTGTCAACACTGAGTTTCTTGAGCCTGGGAAAAAGACAAATAACTGGATACCAATCTCCT 1430
| |||||||| ||||||||||| || ||||||||||| ||||||||||||||||||||||
Sbjct 1377 GCGTCAACACCGAGTTTCTTGACCCCGGGAAAAAGACGAATAACTGGATACCAATCTCCT 1436
Query 1431 GGGGTAATAACAACTCCATGGGAGGTCCACTCGGCGAGGTACTAAACAGCACGACGAATA 1490
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1437 GGGGTAATAACAACTCCATGGGAGGTCCACTCGGCGAGGTACTAAACAGCACGACCAATA 1496
Query 1491 GTCCCAAGTTTGGTTCTTCTCCAACGGGCGTCTTGCAAAAGTCGACATTTGGTTCTCTTT 1550
|||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1497 GTCCCAAGTTTGGTTCCTCTCCAACAGGCGTCTTGCAAAAGTCGACATTTGGTTCTCTTT 1556
Query 1551 CTAACAGCAGCTCGGGAAGCAGCACCATCATTGGCGATAACAACAATAAGAACGGTGATG 1610
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1557 CTAACAGCAGCTCGGCAAGCAGCACCATCATTGGCGATAACAACAATAAGAACGGTGATG 1616
Query 1611 GAAAGGATCCGCTTGGCCCGACCACGCTGATGAACACTTCTGCTACTGCTCCTTCTCTGT 1670
|||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1617 GAAAAGATCCGCTTGGCCCGACCACGCTGATGAATACTTCTGCTACTGCTCCTTCTCTGT 1676
Query 1671 GAAACTaaaaaaaaaaaaCTAAGGACGATGGCGAAAACAAAA-CACtctgtttttctctg 1729
|||||| ||||||||||||||||||| || |||||||||||| |||||||||||||||||
Sbjct 1677 GAAACTGAAAAAAAAAAACTAAGGACAATTGCGAAAACAAAAACACTCTGTTTTTCTCTG 1736
Query 1730 tttctg-ttctttcttacttgatgtattgttgttgttgttgttgttgttgttTTCTTTCT 1788
|||||| || |||||||||||||| ||||||||| | | |||| |||| || ||||||
Sbjct 1737 TTTCTGGTT-TTTCTTACTTGATGCATTGTTGTT-TC-T-GTTGCTGTT-TT--CTTTCT 1789
Query 1789 ATATAAAGCCAGAAGAAACTAAAGGAGAGATGTAt-tttttt 1829
||||||||| ||||||||||||||||||||||| | ||||||
Sbjct 1790 ATATAAAGCAAGAAGAAACTAAAGGAGAGATGTGTGTTTTTT 1831
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 90511582635
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5