BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg481149
Length=1038
Score E
Sequences producing significant alignments: (Bits) Value
AT2G22870.1 | Symbols: EMB2001 | P-loop containing nucleoside t... 1640 0.0
> AT2G22870.1 | Symbols: EMB2001 | P-loop containing nucleoside
triphosphate hydrolases superfamily protein | chr2:9739457-9741104
FORWARD LENGTH=1105
Length=1105
Score = 1640 bits (888), Expect = 0.0
Identities = 990/1040 (95%), Gaps = 3/1040 (0%)
Strand=Plus/Plus
Query 1 aaaa-aaaaTGGTGCTACTTCTCCGATATCGATCCTTAACGATAAATCTCACTCCTTTGA 59
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||| | |
Sbjct 12 AAAACAAAATGGTGCTACTTCTCCGATATCGATCCTTAACGATAAATCTCACTCCTCTAA 71
Query 60 TACCAAAATCTCACAAATTCCACACCCTCCAATCATTTCGTAACCCTAATTTCATCTCTA 119
|||| |||||||| ||||||||||| |||||||||||||||||||||||||||||||| |
Sbjct 72 TACCCAAATCTCAAAAATTCCACACTCTCCAATCATTTCGTAACCCTAATTTCATCTCCA 131
Query 120 TCCCAAAAATCTCAGCCTCTTCGAACAATCCAGCAACAACAACGAATCGTTCGATCTCCG 179
||||||||||||||||||| ||||||||||| |||||||||||||||| ||||||||||
Sbjct 132 TCCCAAAAATCTCAGCCTCCACGAACAATCCAACAACAACAACGAATCGGTCGATCTCCG 191
Query 180 ACGCGGCCAAATTCGCTAAGTCAGTATTATTCATACCTCCTGGTGTAGAGATTGAGGAAC 239
||||| | ||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 192 ACGCGACTAAATTCGCTAAGTCAGTGTTATTCATACCTCCTGGTGTAGAGATTGAGGAAC 251
Query 240 TAACAGATGATATGGTTCTTCCGGGCTCCAATATCGTAATCGGACCTTTTGCGGGTCATT 299
||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||
Sbjct 252 TAACAGATGATATGGTTCTTCCGGGTTCAAATATCGTAATCGGACCTTTTGCGGGTCATT 311
Query 300 CACAAATCAAAGAAGTTGAATTTGTTAAAAGTAGTGCTCGAGCTAGAGATTGTCCTAAAG 359
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 312 CACAAATCAAAGAAGTTGAATTTGTTAAAAGTAGTGCTCGTGCTAGAGATTGTCCTAAAG 371
Query 360 ATGATCGTCCTGAGATTGCGATTTTGGGTCGTTCTAATGTTGGCAAGTCTTCGCTTATCA 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 372 ATGATCGTCCTGAGATTGCGATTTTGGGTCGTTCTAATGTTGGCAAGTCTTCGCTTATCA 431
Query 420 ACTGTTTGGTTCGTAAGAAGGAAGTTGCTCTTACCTCTAAGAAACCTGGGAAGACTCAGC 479
| ||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||
Sbjct 432 ATTGTTTGGTTCGTAAGAAAGAAGTTGCTCTTACTTCTAAGAAACCTGGGAAGACTCAGC 491
Query 480 TTATAAATCATTTCTTGGTGAATAAGAGTTGGTACATTGTGGATTTGCCTGGTTATGGAT 539
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 492 TTATAAATCACTTCTTGGTGAATAAGAGTTGGTACATTGTGGATTTGCCTGGTTATGGAT 551
Query 540 TTGCTAAAGTTTCAGATGCTGCGAAAACAGATTGGTCTGCGTTTACTAAAGGTTACTTCT 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 552 TTGCTAAAGTTTCAGATGCTGCGAAAACAGATTGGTCTGCGTTTACTAAAGGTTACTTCT 611
Query 600 TGAATAGGGACACTCTTGTATGTATTCTTCTTCTGATCGATGCAAGTGTTCCTCCTCAGA 659
||||||| |||| |||||| ||| |||| ||||| |||||||||||||||||||||||||
Sbjct 612 TGAATAGAGACAGTCTTGTTTGTGTTCTACTTCTCATCGATGCAAGTGTTCCTCCTCAGA 671
Query 660 AGATTGATCTTGATTGTGCTAATTGGCTTGGTCGCAACAATGTACCGATGACTTTTGTGT 719
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 672 AGATTGATCTTGATTGTGCTAATTGGCTTGGTCGCAACAATGTACCGATGACTTTCGTGT 731
Query 720 TTACGAAATGCGATAAAATGAAAGCGGCGAAAGGGAAAAGACCTGATGAGAACATCAAAG 779
||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||
Sbjct 732 TTACGAAATGCGATAAAATGAAAGCAACGAAAGGGAAAAGACCTGATGAGAACATTAAAG 791
Query 780 CTTTTCAACAAATCATTAGAGAGAATTTCAAAGTACATCCTCCTTGGATTTTGACGAGTA 839
|||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 792 CTTTCCAACAAATCATTAGAGAGAATTTTAAAGTACATCCTCCTTGGATTTTGACGAGTA 851
Query 840 GTGTATCCGGTTTGGGCAGAGACGAGCTTCTTCTTCACATGTCGCAGCTGAGAAACTACT 899
||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 852 GTGTATCTGGTTTAGGCAGAGACGAGCTTCTTCTTCACATGTCGCAGCTGAGAAACTACT 911
Query 900 GGGATCAATAGGAATCTTGTAAATTTCGCGAACAAATGTTCGAAAAGGTCGGTTTT-AAT 958
|||||||||||| | | |||||||||| |||||||||||||||||||||||||| |||
Sbjct 912 GGGATCAATAGGTAGCGCGTAAATTTCGTAAACAAATGTTCGAAAAGGTCGGTTTTGAAT 971
Query 959 ACATTGGTTATATCAAATGGCAGTTTTGTAATGTAACGGTAACTTTTGTATTCATAGATA 1018
||||||||||||||||| | |||||||||||||||| |||||||||||||| | |||||
Sbjct 972 -CATTGGTTATATCAAATTGTAGTTTTGTAATGTAACAGTAACTTTTGTATTTAAAGATA 1030
Query 1019 AGATCGTAAAATGTTACTAC 1038
||||| |||| |||||||||
Sbjct 1031 AGATCATAAAGTGTTACTAC 1050
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50887190911
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5