BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg481151 Length=897 Score E Sequences producing significant alignments: (Bits) Value AT2G22890.1 | Symbols: | Kua-ubiquitin conjugating enzyme hybr... 1293 0.0 AT4G27030.1 | Symbols: FAD4, FADA | fatty acid desaturase A | c... 769 0.0 AT1G62190.1 | Symbols: | Kua-ubiquitin conjugating enzyme hybr... 551 4e-156 > AT2G22890.1 | Symbols: | Kua-ubiquitin conjugating enzyme hybrid localisation domain | chr2:9742393-9743347 REVERSE LENGTH=955 Length=955 Score = 1293 bits (700), Expect = 0.0 Identities = 838/904 (93%), Gaps = 11/904 (1%) Strand=Plus/Plus Query 1 CTTCAATGGCAATACCTCTTCAAA-CAAAGTACACTCTAAGTCCAATCACAAACAACATC 59 |||||||||| | | ||||||||| |||| |||||||||| ||| ||||||||||||||| Sbjct 4 CTTCAATGGCTACATCTCTTCAAACCAAA-TACACTCTAAATCCCATCACAAACAACATC 62 Query 60 CCAAGAAGCCACCGTCCGTCGCTTCTCCGTGTCACGTCCACCACCAACTCTCAGCCTAAC 119 ||||||||||||||||| ||| ||||||||||||| |||||||||||||||||||||||| Sbjct 63 CCAAGAAGCCACCGTCCATCGTTTCTCCGTGTCACTTCCACCACCAACTCTCAGCCTAAC 122 Query 120 CAT--GA-GAAGCTTGTTCTTGAGCAACGACTTGTGAATCCTCCTCTCTCCAACGACACA 176 ||| || |||||||||| |||||||||||||||||||||||||||||||||||||| || Sbjct 123 CATGAGATGAAGCTTGTTGTTGAGCAACGACTTGTGAATCCTCCTCTCTCCAACGACCCA 182 Query 177 ACTCTACAATCTACATGGACTCACCGGTTATGGGTTGCAGCTGGCTGCACCACCGTCTTT 236 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 183 ACTCTACAATCTACATGGACTCACCGGTTATGGGTTGCAGCTGGCTGCACCACCGTGTTT 242 Query 237 GTCTCTTTTGCCAAATCGATCATTGGAGCGTTTGGTTCTCATCTCTGGCTCGAACCAACT 296 ||||||||| ||||||| ||||||||||| ||||||||||||||||||||||||||| || Sbjct 243 GTCTCTTTTTCCAAATCAATCATTGGAGCATTTGGTTCTCATCTCTGGCTCGAACCATCT 302 Query 297 TTAGCCGGTTTTGCCGGGTACT-TCTTAGCAGATCTAGGTTCTGGTGTCTACCACTGGGC 355 ||||||||||| |||||||| | ||||||||||||||||||||||||| ||||||||||| Sbjct 303 TTAGCCGGTTTCGCCGGGTA-TATCTTAGCAGATCTAGGTTCTGGTGTGTACCACTGGGC 361 Query 356 CACCGATAACTACGGTGATGAGTCAACGCCTCTAGTAGGGACCCATATCGAAGATTCTCA 415 |||||||||||||||||||||||| |||||||||||||| | |||||||||||| ||||| Sbjct 362 CACCGATAACTACGGTGATGAGTCTACGCCTCTAGTAGGAATCCATATCGAAGACTCTCA 421 Query 416 AGATCACCACAAGTGGCCTTGGACAATAACCGGACGGCAATTTGCAAACAATCTACATTT 475 |||||| |||||||| || |||||||| ||| ||||||||||||||||||||||||||| Sbjct 422 AGATCATCACAAGTGTCCATGGACAATCACCAAACGGCAATTTGCAAACAATCTACATTT 481 Query 476 TATGGCTCCAGGCACAACTTTGATAGTTCTCCCACTAGACCTTGCATTTGATGACCATGT 535 |||||||| ||||||||| |||||||||||||||||||||||||| |||||||||||||| Sbjct 482 TATGGCTCGAGGCACAACCTTGATAGTTCTCCCACTAGACCTTGCTTTTGATGACCATGT 541 Query 536 GTTTCATGGCTTTGTAAGCATGTTTGCATTTAGCGTATTGTTTTGTCAGCTGTTCCATAC 595 | ||||||||||||||||||||||||||||| | ||||||||||||||| |||||||| | Sbjct 542 GGTTCATGGCTTTGTAAGCATGTTTGCATTTTGTGTATTGTTTTGTCAGTTGTTCCATGC 601 Query 596 TTGGGCTCATGGAACCAAGAGCAAGCTTCCACCTCTTGTGGTGGGGTTGCAAGACATTGG 655 ||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||| Sbjct 602 TTGGGCTCATGGAACGAAGAGCAAGCTTCCACCTCTTGTGGTTGGGTTGCAAGACATTGG 661 Query 656 GCTGCTTGTTTCACGGATACATCATGTGAATCATCACCGAGCACCGTATAATAACAATTA 715 ||| |||||||||||||||||||| ||||||||||||||||||||||||| |||||||| Sbjct 662 GCTTCTTGTTTCACGGATACATCACATGAATCATCACCGAGCACCGTATAACAACAATTA 721 Query 716 CTGCGTAGTGAGTGGGGTTTGGAACAAGGTTTTGGATGAAAGCAAGGTCTTTGAGGCAAT 775 |||||||||||||||||| |||||||||||||||||||||||||| |||||| ||||||| Sbjct 722 CTGCGTAGTGAGTGGGGTGTGGAACAAGGTTTTGGATGAAAGCAATGTCTTTAAGGCAAT 781 Query 776 GGAGATGGTGTTGTATTTC-AAGATGGGGGTGAGACCGAGGTCATGGACCGATTCAAACT 834 |||||||||||||||| || || ||||| |||||||||||||||||||||| |||||| Sbjct 782 GGAGATGGTGTTGTATATCCAACTTGGGG-TGAGACCGAGGTCATGGACCGAGCCAAACT 840 Query 835 CCTAATGGATGGAAGAAACCGACATATTCAAATGTTAGCGG-CACTTTTAGATATATTCT 893 | |||| | ||||||||||||||||| ||||||||||| | ||||||||| |||||||| Sbjct 841 ACGAATG-ACGGAAGAAACCGACATATCCAAATGTTAGCCGTCACTTTTAGCTATATTCT 899 Query 894 TCGC 897 |||| Sbjct 900 TCGC 903 > AT4G27030.1 | Symbols: FAD4, FADA | fatty acid desaturase A | chr4:13571921-13573070 FORWARD LENGTH=1150 Length=1150 Score = 769 bits (416), Expect = 0.0 Identities = 639/748 (85%), Gaps = 10/748 (1%) Strand=Plus/Plus Query 114 CCTAACCATGAGAAGCTTGTTCTTGAGCAACGACTTGTGAATCCTCCTCTCTCCAACGAC 173 ||||||| |||||||||||| |||||||||| |||| | |||||||| ||||| ||| Sbjct 238 CCTAACCGTGAGAAGCTTGTGGTTGAGCAACGCCTTGCCAGCCCTCCTCTGTCCAATGAC 297 Query 174 ACAACTCT-ACAATCTACATGGACTCACCGGTTATGGGTTGCAGCTGGCTGCACCACCGT 232 ||||| | | |||| ||||||||||||||||||||||||||||| ||||||||||| | Sbjct 298 CCAACTTTGA-AATCGACATGGACTCACCGGTTATGGGTTGCAGCGGGCTGCACCACTTT 356 Query 233 CTTTGTCTCTTTTGCCAAATC-GATCATTGGAGCGTTTGGTTCTCATCTCTGGCTCGAAC 291 ||||||||||| || ||||| | ||||||||| ||||| |||||||||||| ||||||| Sbjct 357 GTTTGTCTCTTTAGCTAAATCTG-TCATTGGAGGGTTTGATTCTCATCTCTGCCTCGAAC 415 Query 292 CAACTTTAGCCGGTTTTGCCGGGTACTTCTTAGCAGATCTAGGTTCTGGTGTCTACCACT 351 || |||||||||||| ||| |||||| ||||||| ||||||||||| ||||||||||||| Sbjct 416 CAGCTTTAGCCGGTTATGCAGGGTACATCTTAGCTGATCTAGGTTCCGGTGTCTACCACT 475 Query 352 GGGCCACCGATAACTACGGTGATGAGTCAACGCCTCTAGTAGGGACCCATATCGAAG-AT 410 |||||| ||||||||||||||||||||||| ||| ||||||| ||||| ||||||| || Sbjct 476 GGGCCATTGATAACTACGGTGATGAGTCAACACCTGTAGTAGGAACCCAAATCGAAGCAT 535 Query 411 TCTCAAGATCACCACAAGTGGCCTTGGACAATAACCGGACGGCAATTTGCAAACAATCTA 470 | ||| | |||||||||||||||||||||||| ||| ||||||||||||| ||||||||| Sbjct 536 T-TCAGGGTCACCACAAGTGGCCTTGGACAATCACCAGACGGCAATTTGCCAACAATCTA 594 Query 471 CATTTTATGGCTCCAGGCACAACTTTGATAGTTCTCCCACTAGACCTTGCATTTGATGAC 530 || | |||||| || || ||| || | |||||| |||||||||||||||||| | ||| Sbjct 595 CACGCTCTGGCTCAAGTCATAACCTTCACAGTTCTTCCACTAGACCTTGCATTTAACGAC 654 Query 531 CATGTGTTTCATGGCTTTGTAAGCATGTTTGCATTTAGCGTATTGTTTTGTCAGCTGTTC 590 | ||||||||| |||||||| ||| ||||||||| || |||||||| | |||| ||| Sbjct 655 CCTGTGTTTCACGGCTTTGTGTGCACATTTGCATTTTGCATATTGTTTAGCCAGCAATTC 714 Query 591 CATACTTGGGCTCATGGAACCAAGAGCAAGCTTCCACCTCTTGTGGTGGGGTTGCAAGAC 650 ||| ||||||| ||||||||||||||||||||||||||||| ||||| | |||||| ||| Sbjct 715 CATGCTTGGGCACATGGAACCAAGAGCAAGCTTCCACCTCTCGTGGTCGCGTTGCAGGAC 774 Query 651 ATTGGGCTGCTTGTTTCACGGATACATCATGTG-AATCATCACCGAGCACCGTATAATAA 709 || ||| | ||||||||||||| ||| |||| | || ||||| |||||||||||||| || Sbjct 775 ATGGGGTTACTTGTTTCACGGAGACAGCATGCGGAA-CATCATCGAGCACCGTATAACAA 833 Query 710 CAATTACTGCGTAGTGAGTGGGGTTTGGAACAAGGTTTTGGATGAAAGCAAGGTCTTTGA 769 |||||||||| | |||||||| | |||||||| ||| ||||||| || ||||||||||| Sbjct 834 CAATTACTGCATCGTGAGTGGAGCATGGAACAATGTTCTGGATGAGAGTAAGGTCTTTGA 893 Query 770 GGCAATGGAGATGGTGTTGTATTTCAAGATGGGGGTGAGACCGAGGTCATGGACCGATTC 829 |||| ||||||||||||| |||||| || | ||||||||||| |||||||||| || | Sbjct 894 GGCATTGGAGATGGTGTTTTATTTCCAGCTTGGGGTGAGACCTAGGTCATGGAGTGAGCC 953 Query 830 AAACTCCTAA-TGGATGGAAGAAACCGA 856 |||||| | | ||||| ||||||||||| Sbjct 954 AAACTC-TGACTGGATAGAAGAAACCGA 980 > AT1G62190.1 | Symbols: | Kua-ubiquitin conjugating enzyme hybrid localisation domain | chr1:22980976-22982007 FORWARD LENGTH=1032 Length=1032 Score = 551 bits (298), Expect = 4e-156 Identities = 683/865 (79%), Gaps = 42/865 (5%) Strand=Plus/Plus Query 19 TTCAAACAAAGTACACTCTAAGTCCAATCACAAACAACATCCCAAGAAGCCACCGTCCGT 78 ||||||| ||| || ||||||| || ||||| |||||||||||||||| | |||| Sbjct 14 TTCAAACCAAGAACCCTCTAAGACCCATCAC---CAACATCCCAAGAAGCTATGGTCCAA 70 Query 79 CGCTTCTCCGTGTCAC--G-TC-----C-ACCACCAACT-CTCAGCCTAACCATGAGAAG 128 ||| | | |||||||| | || | |||||||| | |||||| ||| |||||||| Sbjct 71 CGCGTGTACGTGTCACATGCTCTGTTACTACCACCAA-TCCTCAGCTTAATCATGAGAAC 129 Query 129 CTTGTTCTTGAGCAACGACTTGTGAATCCTCCTCTCT-C-----CAACGACACAACTCTA 182 ||||| ||||| |||| ||||||||||||||||| | | ||||||| | ||||| Sbjct 130 CTTGTAGTTGAGAAACGCCTTGTGAATCCTCCTCTTTCCAAGAACAACGACCCGACTCTG 189 Query 183 CAATCTACATGGACTCACCGGTTATGGGTTGCAGCTGGCTGCACCACCGTCTTTGTCTCT 242 ||||| ||||||||||| ||||||||||||||||| || | || ||| | |||| |||| Sbjct 190 CAATCGACATGGACTCATCGGTTATGGGTTGCAGCGGGAAGTACAACCATATTTGCCTCT 249 Query 243 TTTGCCAAATCGATCATTGGAGCGTTTGGTTCTCATCTCTGGCTCGAACCAACTTTAGCC 302 || || ||||| |||||||||| ||||||||||||||| |||||| ||||| |||||| | Sbjct 250 TTCGCTAAATCTATCATTGGAGGGTTTGGTTCTCATCTTTGGCTCCAACCAGCTTTAG-C 308 Query 303 G-GTTTTGCCGGGTACTTCTTAGCAGATCTAGGTTCTGGTGTCTACCACTGGGCCACCGA 361 | ||| ||| |||||| | || || |||||||| || ||||| ||||||||||||| || Sbjct 309 GTGTTATGCAGGGTACGTGTTTGCTGATCTAGGCTCCGGTGTTTACCACTGGGCCATTGA 368 Query 362 TAACTACGGTGATG-AGTCAACGCCTCTAGTAGGGA-CCCATA-TCGAAGATTCTCAAGA 418 |||||| |||| || | ||||| ||| |||| ||| |||| | | |||| ||||| | Sbjct 369 TAACTATGGTGGTGCA-TCAACACCTATAGT-TGGAGCCCA-ACTTGAAGCGTCTCAGGG 425 Query 419 TCACCACAAGTGGCCTTGGACAATAACCGGACGGCAATTTGCAAACAA-TC-TACATTTT 476 ||| ||||||| || |||||||| || ||| ||||| || ||||| || |||| | Sbjct 426 TCATCACAAGTATCCCTGGACAATCACAAAACGTCAATTCGCCAACAATTCATACA--CT 483 Query 477 ATGGCTCCAGGCACAACTTTGATAGTTCTCCCACTAGACCTTGCATTTGATGA-CCATGT 535 || |||| || || |||||| |||||||| |||||| |||||||| || | | || | | Sbjct 484 ATCGCTCGAGCCATAACTTTTATAGTTCTACCACTAAACCTTGCAATTAACAATCC-TCT 542 Query 536 GTTTCATGGCTTTGTAAGCATGTTTGCATTTAGCGTATTGTTTTGTCAGCTGTTCCATAC 595 ||||||| ||||||| |||| ||||||||| || | ||||| | || | |||||| | Sbjct 543 GTTTCATAGCTTTGTGAGCACATTTGCATTTTGCATTTTGTTAAGCCAACAATTCCATGC 602 Query 596 TTGGGCTCATGGAACCAAGAGCAAGCTTCCACCTCTTGTGGTGGGGTTGCAAGACATTGG 655 |||||||||||||||||||||||||||||||||||| ||| ||| |||||| ||||| || Sbjct 603 TTGGGCTCATGGAACCAAGAGCAAGCTTCCACCTCTCGTGATGGCGTTGCAGGACAT-GG 661 Query 656 G-CTGCTTGTTTCACGGATACATCAT--GTGAATCATCACCGAGCACCGTATAATAACAA 712 | |||||||| ||||||| | |||| | || ||||||| |||||||||||| | ||| Sbjct 662 GACTGCTTGTCTCACGGAAAGATCACCCGGGA--CATCACCAAGCACCGTATAACAGCAA 719 Query 713 TTACTGCGTAGTGAGTGGGGTTTGGAACAAGGTTTTGGATGAAAGCAAGGTCTTTGAGGC 772 ||||| ||||||||||||| |||||||| |||||||| ||||| || | ||| |||| Sbjct 720 CTACTGTGTAGTGAGTGGGGCATGGAACAAAGTTTTGGACGAAAGTAACTTATTTAAGGC 779 Query 773 AATGGAGATGGTGTTGTATTTCAAGATGGGGGTGAGACCGAGGTCATGGACCGATTCAAA 832 | ||||||||| ||||| |||| || | || |||||||| | || |||| ||| |||| Sbjct 780 ATTGGAGATGGCGTTGTTTTTCCAGTTCGGTGTGAGACCAAACTCGTGGAACGAGCCAAA 839 Query 833 CTCCTAA-TGGATGGAAGAAACCGA 856 ||| | | |||| ||||||||||| Sbjct 840 CTC-TGACTGGACAGAAGAAACCGA 863 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 43804176184 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5