BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg481151
Length=897
Score E
Sequences producing significant alignments: (Bits) Value
AT2G22890.1 | Symbols: | Kua-ubiquitin conjugating enzyme hybr... 1293 0.0
AT4G27030.1 | Symbols: FAD4, FADA | fatty acid desaturase A | c... 769 0.0
AT1G62190.1 | Symbols: | Kua-ubiquitin conjugating enzyme hybr... 551 4e-156
> AT2G22890.1 | Symbols: | Kua-ubiquitin conjugating enzyme hybrid
localisation domain | chr2:9742393-9743347 REVERSE LENGTH=955
Length=955
Score = 1293 bits (700), Expect = 0.0
Identities = 838/904 (93%), Gaps = 11/904 (1%)
Strand=Plus/Plus
Query 1 CTTCAATGGCAATACCTCTTCAAA-CAAAGTACACTCTAAGTCCAATCACAAACAACATC 59
|||||||||| | | ||||||||| |||| |||||||||| ||| |||||||||||||||
Sbjct 4 CTTCAATGGCTACATCTCTTCAAACCAAA-TACACTCTAAATCCCATCACAAACAACATC 62
Query 60 CCAAGAAGCCACCGTCCGTCGCTTCTCCGTGTCACGTCCACCACCAACTCTCAGCCTAAC 119
||||||||||||||||| ||| ||||||||||||| ||||||||||||||||||||||||
Sbjct 63 CCAAGAAGCCACCGTCCATCGTTTCTCCGTGTCACTTCCACCACCAACTCTCAGCCTAAC 122
Query 120 CAT--GA-GAAGCTTGTTCTTGAGCAACGACTTGTGAATCCTCCTCTCTCCAACGACACA 176
||| || |||||||||| |||||||||||||||||||||||||||||||||||||| ||
Sbjct 123 CATGAGATGAAGCTTGTTGTTGAGCAACGACTTGTGAATCCTCCTCTCTCCAACGACCCA 182
Query 177 ACTCTACAATCTACATGGACTCACCGGTTATGGGTTGCAGCTGGCTGCACCACCGTCTTT 236
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 183 ACTCTACAATCTACATGGACTCACCGGTTATGGGTTGCAGCTGGCTGCACCACCGTGTTT 242
Query 237 GTCTCTTTTGCCAAATCGATCATTGGAGCGTTTGGTTCTCATCTCTGGCTCGAACCAACT 296
||||||||| ||||||| ||||||||||| ||||||||||||||||||||||||||| ||
Sbjct 243 GTCTCTTTTTCCAAATCAATCATTGGAGCATTTGGTTCTCATCTCTGGCTCGAACCATCT 302
Query 297 TTAGCCGGTTTTGCCGGGTACT-TCTTAGCAGATCTAGGTTCTGGTGTCTACCACTGGGC 355
||||||||||| |||||||| | ||||||||||||||||||||||||| |||||||||||
Sbjct 303 TTAGCCGGTTTCGCCGGGTA-TATCTTAGCAGATCTAGGTTCTGGTGTGTACCACTGGGC 361
Query 356 CACCGATAACTACGGTGATGAGTCAACGCCTCTAGTAGGGACCCATATCGAAGATTCTCA 415
|||||||||||||||||||||||| |||||||||||||| | |||||||||||| |||||
Sbjct 362 CACCGATAACTACGGTGATGAGTCTACGCCTCTAGTAGGAATCCATATCGAAGACTCTCA 421
Query 416 AGATCACCACAAGTGGCCTTGGACAATAACCGGACGGCAATTTGCAAACAATCTACATTT 475
|||||| |||||||| || |||||||| ||| |||||||||||||||||||||||||||
Sbjct 422 AGATCATCACAAGTGTCCATGGACAATCACCAAACGGCAATTTGCAAACAATCTACATTT 481
Query 476 TATGGCTCCAGGCACAACTTTGATAGTTCTCCCACTAGACCTTGCATTTGATGACCATGT 535
|||||||| ||||||||| |||||||||||||||||||||||||| ||||||||||||||
Sbjct 482 TATGGCTCGAGGCACAACCTTGATAGTTCTCCCACTAGACCTTGCTTTTGATGACCATGT 541
Query 536 GTTTCATGGCTTTGTAAGCATGTTTGCATTTAGCGTATTGTTTTGTCAGCTGTTCCATAC 595
| ||||||||||||||||||||||||||||| | ||||||||||||||| |||||||| |
Sbjct 542 GGTTCATGGCTTTGTAAGCATGTTTGCATTTTGTGTATTGTTTTGTCAGTTGTTCCATGC 601
Query 596 TTGGGCTCATGGAACCAAGAGCAAGCTTCCACCTCTTGTGGTGGGGTTGCAAGACATTGG 655
||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||
Sbjct 602 TTGGGCTCATGGAACGAAGAGCAAGCTTCCACCTCTTGTGGTTGGGTTGCAAGACATTGG 661
Query 656 GCTGCTTGTTTCACGGATACATCATGTGAATCATCACCGAGCACCGTATAATAACAATTA 715
||| |||||||||||||||||||| ||||||||||||||||||||||||| ||||||||
Sbjct 662 GCTTCTTGTTTCACGGATACATCACATGAATCATCACCGAGCACCGTATAACAACAATTA 721
Query 716 CTGCGTAGTGAGTGGGGTTTGGAACAAGGTTTTGGATGAAAGCAAGGTCTTTGAGGCAAT 775
|||||||||||||||||| |||||||||||||||||||||||||| |||||| |||||||
Sbjct 722 CTGCGTAGTGAGTGGGGTGTGGAACAAGGTTTTGGATGAAAGCAATGTCTTTAAGGCAAT 781
Query 776 GGAGATGGTGTTGTATTTC-AAGATGGGGGTGAGACCGAGGTCATGGACCGATTCAAACT 834
|||||||||||||||| || || ||||| |||||||||||||||||||||| ||||||
Sbjct 782 GGAGATGGTGTTGTATATCCAACTTGGGG-TGAGACCGAGGTCATGGACCGAGCCAAACT 840
Query 835 CCTAATGGATGGAAGAAACCGACATATTCAAATGTTAGCGG-CACTTTTAGATATATTCT 893
| |||| | ||||||||||||||||| ||||||||||| | ||||||||| ||||||||
Sbjct 841 ACGAATG-ACGGAAGAAACCGACATATCCAAATGTTAGCCGTCACTTTTAGCTATATTCT 899
Query 894 TCGC 897
||||
Sbjct 900 TCGC 903
> AT4G27030.1 | Symbols: FAD4, FADA | fatty acid desaturase A |
chr4:13571921-13573070 FORWARD LENGTH=1150
Length=1150
Score = 769 bits (416), Expect = 0.0
Identities = 639/748 (85%), Gaps = 10/748 (1%)
Strand=Plus/Plus
Query 114 CCTAACCATGAGAAGCTTGTTCTTGAGCAACGACTTGTGAATCCTCCTCTCTCCAACGAC 173
||||||| |||||||||||| |||||||||| |||| | |||||||| ||||| |||
Sbjct 238 CCTAACCGTGAGAAGCTTGTGGTTGAGCAACGCCTTGCCAGCCCTCCTCTGTCCAATGAC 297
Query 174 ACAACTCT-ACAATCTACATGGACTCACCGGTTATGGGTTGCAGCTGGCTGCACCACCGT 232
||||| | | |||| ||||||||||||||||||||||||||||| ||||||||||| |
Sbjct 298 CCAACTTTGA-AATCGACATGGACTCACCGGTTATGGGTTGCAGCGGGCTGCACCACTTT 356
Query 233 CTTTGTCTCTTTTGCCAAATC-GATCATTGGAGCGTTTGGTTCTCATCTCTGGCTCGAAC 291
||||||||||| || ||||| | ||||||||| ||||| |||||||||||| |||||||
Sbjct 357 GTTTGTCTCTTTAGCTAAATCTG-TCATTGGAGGGTTTGATTCTCATCTCTGCCTCGAAC 415
Query 292 CAACTTTAGCCGGTTTTGCCGGGTACTTCTTAGCAGATCTAGGTTCTGGTGTCTACCACT 351
|| |||||||||||| ||| |||||| ||||||| ||||||||||| |||||||||||||
Sbjct 416 CAGCTTTAGCCGGTTATGCAGGGTACATCTTAGCTGATCTAGGTTCCGGTGTCTACCACT 475
Query 352 GGGCCACCGATAACTACGGTGATGAGTCAACGCCTCTAGTAGGGACCCATATCGAAG-AT 410
|||||| ||||||||||||||||||||||| ||| ||||||| ||||| ||||||| ||
Sbjct 476 GGGCCATTGATAACTACGGTGATGAGTCAACACCTGTAGTAGGAACCCAAATCGAAGCAT 535
Query 411 TCTCAAGATCACCACAAGTGGCCTTGGACAATAACCGGACGGCAATTTGCAAACAATCTA 470
| ||| | |||||||||||||||||||||||| ||| ||||||||||||| |||||||||
Sbjct 536 T-TCAGGGTCACCACAAGTGGCCTTGGACAATCACCAGACGGCAATTTGCCAACAATCTA 594
Query 471 CATTTTATGGCTCCAGGCACAACTTTGATAGTTCTCCCACTAGACCTTGCATTTGATGAC 530
|| | |||||| || || ||| || | |||||| |||||||||||||||||| | |||
Sbjct 595 CACGCTCTGGCTCAAGTCATAACCTTCACAGTTCTTCCACTAGACCTTGCATTTAACGAC 654
Query 531 CATGTGTTTCATGGCTTTGTAAGCATGTTTGCATTTAGCGTATTGTTTTGTCAGCTGTTC 590
| ||||||||| |||||||| ||| ||||||||| || |||||||| | |||| |||
Sbjct 655 CCTGTGTTTCACGGCTTTGTGTGCACATTTGCATTTTGCATATTGTTTAGCCAGCAATTC 714
Query 591 CATACTTGGGCTCATGGAACCAAGAGCAAGCTTCCACCTCTTGTGGTGGGGTTGCAAGAC 650
||| ||||||| ||||||||||||||||||||||||||||| ||||| | |||||| |||
Sbjct 715 CATGCTTGGGCACATGGAACCAAGAGCAAGCTTCCACCTCTCGTGGTCGCGTTGCAGGAC 774
Query 651 ATTGGGCTGCTTGTTTCACGGATACATCATGTG-AATCATCACCGAGCACCGTATAATAA 709
|| ||| | ||||||||||||| ||| |||| | || ||||| |||||||||||||| ||
Sbjct 775 ATGGGGTTACTTGTTTCACGGAGACAGCATGCGGAA-CATCATCGAGCACCGTATAACAA 833
Query 710 CAATTACTGCGTAGTGAGTGGGGTTTGGAACAAGGTTTTGGATGAAAGCAAGGTCTTTGA 769
|||||||||| | |||||||| | |||||||| ||| ||||||| || |||||||||||
Sbjct 834 CAATTACTGCATCGTGAGTGGAGCATGGAACAATGTTCTGGATGAGAGTAAGGTCTTTGA 893
Query 770 GGCAATGGAGATGGTGTTGTATTTCAAGATGGGGGTGAGACCGAGGTCATGGACCGATTC 829
|||| ||||||||||||| |||||| || | ||||||||||| |||||||||| || |
Sbjct 894 GGCATTGGAGATGGTGTTTTATTTCCAGCTTGGGGTGAGACCTAGGTCATGGAGTGAGCC 953
Query 830 AAACTCCTAA-TGGATGGAAGAAACCGA 856
|||||| | | ||||| |||||||||||
Sbjct 954 AAACTC-TGACTGGATAGAAGAAACCGA 980
> AT1G62190.1 | Symbols: | Kua-ubiquitin conjugating enzyme hybrid
localisation domain | chr1:22980976-22982007 FORWARD LENGTH=1032
Length=1032
Score = 551 bits (298), Expect = 4e-156
Identities = 683/865 (79%), Gaps = 42/865 (5%)
Strand=Plus/Plus
Query 19 TTCAAACAAAGTACACTCTAAGTCCAATCACAAACAACATCCCAAGAAGCCACCGTCCGT 78
||||||| ||| || ||||||| || ||||| |||||||||||||||| | ||||
Sbjct 14 TTCAAACCAAGAACCCTCTAAGACCCATCAC---CAACATCCCAAGAAGCTATGGTCCAA 70
Query 79 CGCTTCTCCGTGTCAC--G-TC-----C-ACCACCAACT-CTCAGCCTAACCATGAGAAG 128
||| | | |||||||| | || | |||||||| | |||||| ||| ||||||||
Sbjct 71 CGCGTGTACGTGTCACATGCTCTGTTACTACCACCAA-TCCTCAGCTTAATCATGAGAAC 129
Query 129 CTTGTTCTTGAGCAACGACTTGTGAATCCTCCTCTCT-C-----CAACGACACAACTCTA 182
||||| ||||| |||| ||||||||||||||||| | | ||||||| | |||||
Sbjct 130 CTTGTAGTTGAGAAACGCCTTGTGAATCCTCCTCTTTCCAAGAACAACGACCCGACTCTG 189
Query 183 CAATCTACATGGACTCACCGGTTATGGGTTGCAGCTGGCTGCACCACCGTCTTTGTCTCT 242
||||| ||||||||||| ||||||||||||||||| || | || ||| | |||| ||||
Sbjct 190 CAATCGACATGGACTCATCGGTTATGGGTTGCAGCGGGAAGTACAACCATATTTGCCTCT 249
Query 243 TTTGCCAAATCGATCATTGGAGCGTTTGGTTCTCATCTCTGGCTCGAACCAACTTTAGCC 302
|| || ||||| |||||||||| ||||||||||||||| |||||| ||||| |||||| |
Sbjct 250 TTCGCTAAATCTATCATTGGAGGGTTTGGTTCTCATCTTTGGCTCCAACCAGCTTTAG-C 308
Query 303 G-GTTTTGCCGGGTACTTCTTAGCAGATCTAGGTTCTGGTGTCTACCACTGGGCCACCGA 361
| ||| ||| |||||| | || || |||||||| || ||||| ||||||||||||| ||
Sbjct 309 GTGTTATGCAGGGTACGTGTTTGCTGATCTAGGCTCCGGTGTTTACCACTGGGCCATTGA 368
Query 362 TAACTACGGTGATG-AGTCAACGCCTCTAGTAGGGA-CCCATA-TCGAAGATTCTCAAGA 418
|||||| |||| || | ||||| ||| |||| ||| |||| | | |||| ||||| |
Sbjct 369 TAACTATGGTGGTGCA-TCAACACCTATAGT-TGGAGCCCA-ACTTGAAGCGTCTCAGGG 425
Query 419 TCACCACAAGTGGCCTTGGACAATAACCGGACGGCAATTTGCAAACAA-TC-TACATTTT 476
||| ||||||| || |||||||| || ||| ||||| || ||||| || |||| |
Sbjct 426 TCATCACAAGTATCCCTGGACAATCACAAAACGTCAATTCGCCAACAATTCATACA--CT 483
Query 477 ATGGCTCCAGGCACAACTTTGATAGTTCTCCCACTAGACCTTGCATTTGATGA-CCATGT 535
|| |||| || || |||||| |||||||| |||||| |||||||| || | | || | |
Sbjct 484 ATCGCTCGAGCCATAACTTTTATAGTTCTACCACTAAACCTTGCAATTAACAATCC-TCT 542
Query 536 GTTTCATGGCTTTGTAAGCATGTTTGCATTTAGCGTATTGTTTTGTCAGCTGTTCCATAC 595
||||||| ||||||| |||| ||||||||| || | ||||| | || | |||||| |
Sbjct 543 GTTTCATAGCTTTGTGAGCACATTTGCATTTTGCATTTTGTTAAGCCAACAATTCCATGC 602
Query 596 TTGGGCTCATGGAACCAAGAGCAAGCTTCCACCTCTTGTGGTGGGGTTGCAAGACATTGG 655
|||||||||||||||||||||||||||||||||||| ||| ||| |||||| ||||| ||
Sbjct 603 TTGGGCTCATGGAACCAAGAGCAAGCTTCCACCTCTCGTGATGGCGTTGCAGGACAT-GG 661
Query 656 G-CTGCTTGTTTCACGGATACATCAT--GTGAATCATCACCGAGCACCGTATAATAACAA 712
| |||||||| ||||||| | |||| | || ||||||| |||||||||||| | |||
Sbjct 662 GACTGCTTGTCTCACGGAAAGATCACCCGGGA--CATCACCAAGCACCGTATAACAGCAA 719
Query 713 TTACTGCGTAGTGAGTGGGGTTTGGAACAAGGTTTTGGATGAAAGCAAGGTCTTTGAGGC 772
||||| ||||||||||||| |||||||| |||||||| ||||| || | ||| ||||
Sbjct 720 CTACTGTGTAGTGAGTGGGGCATGGAACAAAGTTTTGGACGAAAGTAACTTATTTAAGGC 779
Query 773 AATGGAGATGGTGTTGTATTTCAAGATGGGGGTGAGACCGAGGTCATGGACCGATTCAAA 832
| ||||||||| ||||| |||| || | || |||||||| | || |||| ||| ||||
Sbjct 780 ATTGGAGATGGCGTTGTTTTTCCAGTTCGGTGTGAGACCAAACTCGTGGAACGAGCCAAA 839
Query 833 CTCCTAA-TGGATGGAAGAAACCGA 856
||| | | |||| |||||||||||
Sbjct 840 CTC-TGACTGGACAGAAGAAACCGA 863
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43804176184
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5