BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg481153

Length=658
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G22905.1 | Symbols:  | Expressed protein | chr2:9748771-9749...   665    0.0  


> AT2G22905.1 | Symbols:  | Expressed protein | chr2:9748771-9749542 
FORWARD LENGTH=772
Length=772

 Score =  665 bits (360),  Expect = 0.0
 Identities = 471/524 (90%), Gaps = 10/524 (2%)
 Strand=Plus/Plus

Query  140  AATCATCTATCATTTTCTTTTGATCTTGTACAAAAATAAATGGCAAGTTGTAGATC-CCG  198
            ||||| |||||||||  |||||||||||||| |||||||||||||| ||| ||| | || 
Sbjct  147  AATCACCTATCATTTGATTTTGATCTTGTAC-AAAATAAATGGCAAATTGCAGAACTCC-  204

Query  199  ACCACCGTGTGTTGGTACGCTAAGCCGCGGCGAGGTTTCGGAAAACTCTGGTTTTCGGTC  258
            || |||||| ||||| | ||| |||||||||| ||||| ||||||||| | |||||||||
Sbjct  205  ACGACCGTGCGTTGGCAAGCTCAGCCGCGGCGTGGTTTGGGAAAACTCCGATTTTCGGTC  264

Query  259  TAG-ACCGCCCGGTTCTTGGGGATGTCCGAAGCAAATGAGACAAAATCATGTGTCTTCTT  317
            | | ||| || |||||||||||||||||||||||||||||||| ||||| ||||||||||
Sbjct  265  T-GAACCTCCAGGTTCTTGGGGATGTCCGAAGCAAATGAGACACAATCACGTGTCTTCTT  323

Query  318  CGACAA--G-GCAGCAACGACGAAGCTGGACCAACACCAACAGTGGAGAGAGAAAGAGCC  374
            ||||||  | ||| ||||||||||||||||||||| | ||| ||  ||| | ||||||||
Sbjct  324  CGACAACGGAGCATCAACGACGAAGCTGGACCAACGCTAACGGTAAAGAAACAAAGAGCC  383

Query  375  ATTCCTATTTTGGAGACTCCGGTGGGGTTGTTGCGGCGGATGAAGCGGAGTTAGTGGCGG  434
            ||||| |||||| |||||| |||||| ||||||||| ||| ||||||||||||||||| |
Sbjct  384  ATTCCAATTTTGCAGACTCTGGTGGGATTGTTGCGGTGGAGGAAGCGGAGTTAGTGGCAG  443

Query  435  TGCTGAGGGAGGCTCATCCGTACGTGAATTTACATAGAGACTGTAAATTTGTCGTTATGT  494
            || |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct  444  TGTTGAGGGAGGCTCATCCGTACGTGAATTTACATAGAGACAGTAAATTTGTCGTTATGT  503

Query  495  TGTCGGCTGAGCTACTTGACTCCGGTTCGACACTCGATGGCATTCTCAAGGTCGTTACTA  554
            ||||||||||||||||||||||||||||||| ||||| ||||||||||||||| ||||||
Sbjct  504  TGTCGGCTGAGCTACTTGACTCCGGTTCGACCCTCGACGGCATTCTCAAGGTCATTACTA  563

Query  555  TTTACTGCTTTTCACATTACTGGATTCCaaaaaaaGACAAAACGCGTGACTCGTGAGCAA  614
            |||||| |||||||||||||| |||||||||||| |||||||||||||||||||||||||
Sbjct  564  TTTACT-CTTTTCACATTACTAGATTCCAAAAAA-GACAAAACGCGTGACTCGTGAGCAA  621

Query  615  GAAATGGATCACTGAAATAATTTCTAAAATAATATCCTAGTAAT  658
            |||||| |||||| |||||||||||||||||||||| |||||||
Sbjct  622  GAAATGCATCACTCAAATAATTTCTAAAATAATATCATAGTAAT  665



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 31798215051


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5