BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg481157

Length=225
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G22942.1 | Symbols:  | growth factors | chr2:9763814-9764563...   278    2e-74


> AT2G22942.1 | Symbols:  | growth factors | chr2:9763814-9764563 
REVERSE LENGTH=330
Length=330

 Score =  278 bits (150),  Expect = 2e-74
 Identities = 180/195 (92%), Gaps = 0/195 (0%)
 Strand=Plus/Plus

Query  1    ATGTCAAAGATTAACATAGTTATCTTTGCAGCACTTTTACTTAGCTTCATGGTTATTGCT  60
            |||||||||||||||||  ||||| |||||||| |||||||||||| | ||||| |||||
Sbjct  1    ATGTCAAAGATTAACATTCTTATCGTTGCAGCAGTTTTACTTAGCTCCGTGGTTCTTGCT  60

Query  61   TCAGTGGCTCGTCCCGACTTGACTCTACAGAGCAAATCAACGGAAATGGAGAAGAACTGT  120
            |||||||||||||| |||| |||||| ||||||||||||||||| || ||||||||||||
Sbjct  61   TCAGTGGCTCGTCCGGACTCGACTCTCCAGAGCAAATCAACGGAGATAGAGAAGAACTGT  120

Query  121  GAAACGGAGGAGTGTTTGATGAAAACGACATCAGATGCTCACCTCGATTACATCTATACC  180
            ||||| || ||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct  121  GAAACCGATGAGTGTTTGATGAAAACGACATCGGATGCTCACCTCGATTACATCTATACC  180

Query  181  CAAAATCCTCCTCCG  195
            |||||||||||||||
Sbjct  181  CAAAATCCTCCTCCG  195



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 10103817549


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5