BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg481174 Length=1123 Score E Sequences producing significant alignments: (Bits) Value AT2G23030.1 | Symbols: SNRK2-9, SNRK2.9 | SNF1-related protein ... 1670 0.0 > AT2G23030.1 | Symbols: SNRK2-9, SNRK2.9 | SNF1-related protein kinase 2.9 | chr2:9803492-9806700 REVERSE LENGTH=1378 Length=1378 Score = 1670 bits (904), Expect = 0.0 Identities = 1078/1156 (93%), Gaps = 36/1156 (3%) Strand=Plus/Plus Query 1 TCTAAAGATATTTTGGAAGAGAAGATTCATCaaaaa-aaaaaaaaGATATTAAAGGACCA 59 |||| |||||||||||| |||||||||||||||||| |||||||| ||| |||||||||| Sbjct 1 TCTACAGATATTTTGGACGAGAAGATTCATCAAAAAGAAAAAAAAAATAATAAAGGACCA 60 Query 60 TTTTAAGGAAGTGAG------AACAAAA-----A---ATGGAGAAGTATGAGATGGTGAA 105 ||||| ||||||||| ||||||| | ||||||||||||||||||||||| Sbjct 61 TTTTAGGGAAGTGAGAACAAAAACAAAAGTGGTAGCTATGGAGAAGTATGAGATGGTGAA 120 Query 106 GGATTTGGGATTTGGTAATTTCGGTTTGGCTCGGCTTATGCGTAATAAGCAAACAAACGA 165 |||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 121 GGATTTAGGATTTGGTAATTTCGGATTGGCTCGGCTTATGCGTAATAAGCAAACAAACGA 180 Query 166 GCTTGTGGCTGTCAAATTCATCGATCGAGGCTATAAGATTGATGAGAACGTTGCAAGAGA 225 ||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||| Sbjct 181 GCTTGTGGCTGTCAAATTCATCGATCGAGGCTACAAGATAGATGAGAACGTTGCAAGAGA 240 Query 226 AATAATCAATCATAGAGCTCTCAACCATCCCAATA---------TT------GTTGTTCT 270 |||||||||||||||||||||||||||||| |||| || |||||| | Sbjct 241 AATAATCAATCATAGAGCTCTCAACCATCCGAATATTGTTCGGTTTAAAGAGGTTGTTTT 300 Query 271 AACTCCGACACATCTTGGGATTGTAATGGAGTACGCAGCTGGAGGAGAACTATTTGATCG 330 |||||||||||||||||| || ||||||||||| ||||||||||||||||| || || || Sbjct 301 AACTCCGACACATCTTGGAATAGTAATGGAGTATGCAGCTGGAGGAGAACTGTTCGAGCG 360 Query 331 GATATCTAGCGCGGGTCGATTTAGCGAAGCTGAGGCAAGATATTTCTTTCAACAACTCAT 390 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 361 GATATCTAGCGTGGGTCGATTTAGCGAAGCTGAGGCAAGATATTTCTTTCAACAACTCAT 420 Query 391 CTGTGGAGTCCATTACTTACATGCCA-TGAAAATATGCCACAGAGATCTGAAATTAGAAA 449 |||||||||||||||||||||| || || |||||||||| ||||||||||||||||||| Sbjct 421 TTGTGGAGTCCATTACTTACATG-CATTGCAAATATGCCATAGAGATCTGAAATTAGAAA 479 Query 450 ACACATTGCTTGATGGAAGCCCAGCACCACGTTTAAAAATTTGTGATTTTGGCTACTCAA 509 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 480 ACACATTGCTTGATGGAAGCCCAGCACCACGTTTAAAAATTTGTGATTTTGGCTACTCAA 539 Query 510 AGTCTTCTGTTCTGCATTCCAACCCAAAATCAACGGTGGGAACTCCGGCATATATAGCAC 569 |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 540 AGTCTTCTGTTCTGCACTCCAACCCAAAATCAACGGTGGGAACTCCGGCATATATAGCAC 599 Query 570 CGGAAGTTTTTTGTCGATCGGAATACGATGGAAAGTCAGTTGATGTGTGGTCTTGTGGAG 629 |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 600 CGGAAGTTTTTTGTCGATCGGAATACGACGGAAAGTCAGTTGATGTGTGGTCTTGTGGAG 659 Query 630 TGGCACTCTATGTTATGTTGGTAGGAGCTTATCCTTTCGAAGACCCTAAAGATCCTCGCA 689 |||| ||||||||||||||||||||||||||||| ||||||||||||||||| ||||||| Sbjct 660 TGGCCCTCTATGTTATGTTGGTAGGAGCTTATCCATTCGAAGACCCTAAAGACCCTCGCA 719 Query 690 ATTTTCGAAAAACTGTTCAGAAAATAATGGCTGTACAGTACAAGATTCCAGGATATGTTC 749 |||| |||||||||||||||||||||||||| ||| | |||||||||||||||||||||| Sbjct 720 ATTTCCGAAAAACTGTTCAGAAAATAATGGCCGTAAACTACAAGATTCCAGGATATGTTC 779 Query 750 ACATATCAGAAGACTGCAGAAAGTTATTATCTCGTATATTTGTTGCCAATCCGTTACATA 809 ||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 780 ACATATCCGAAGACTGCAGAAAGTTACTATCTCGTATATTTGTTGCCAATCCGTTACATA 839 Query 810 GAAGTACGCTTAAAGAGATTAAGAGTCATGCATGGTTCCTAAAGAATTTGCCAAGAGAAC 869 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 840 GAAGTACGCTTAAAGAGATTAAGAGTCATGCATGGTTCCTAAAGAATTTGCCAAGAGAAT 899 Query 870 TAAAGGAGTCAGCACAAGCTATTTATTACCAAAGGAATGTTAATCTTATTAACTTTTCTC 929 |||||||| |||||||||| || ||||||||||||||||||||||||||||| ||||||| Sbjct 900 TAAAGGAGCCAGCACAAGCAATCTATTACCAAAGGAATGTTAATCTTATTAATTTTTCTC 959 Query 930 CTCAAAGAGTAGAGGAGATTATGAAGATAGTTGGTGAGGCAAGAACCATTCCAAACCTTT 989 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 960 CTCAAAGAGTAGAGGAGATTATGAAGATAGTTGGTGAGGCAAGAACCATTCCAAACCTTT 1019 Query 990 CTCGCCCGGTCGAATCGCTTGGACCAGG-AAAGATAGATGATGAAGAAGAAGAATATTTG 1048 ||||||||||||||||||||||| ||| ||| | ||||||||| ||||||||||||||| Sbjct 1020 CTCGCCCGGTCGAATCGCTTGGATCAGATAAAAA-AGATGATGATGAAGAAGAATATTTG 1078 Query 1049 GATGCTAATGATGAAGAATGGTATGATGATTACGCATAAACAATAAAAATGTATT-TCAT 1107 |||||||||||||||||||||||||||||||||||||| |||||||||||||||| | || Sbjct 1079 GATGCTAATGATGAAGAATGGTATGATGATTACGCATAGACAATAAAAATGTATTAT-AT 1137 Query 1108 GTTGTCAAATTATGAA 1123 |||||||||||||||| Sbjct 1138 GTTGTCAAATTATGAA 1153 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 55069997865 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5