BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg481174
Length=1123
Score E
Sequences producing significant alignments: (Bits) Value
AT2G23030.1 | Symbols: SNRK2-9, SNRK2.9 | SNF1-related protein ... 1670 0.0
> AT2G23030.1 | Symbols: SNRK2-9, SNRK2.9 | SNF1-related protein
kinase 2.9 | chr2:9803492-9806700 REVERSE LENGTH=1378
Length=1378
Score = 1670 bits (904), Expect = 0.0
Identities = 1078/1156 (93%), Gaps = 36/1156 (3%)
Strand=Plus/Plus
Query 1 TCTAAAGATATTTTGGAAGAGAAGATTCATCaaaaa-aaaaaaaaGATATTAAAGGACCA 59
|||| |||||||||||| |||||||||||||||||| |||||||| ||| ||||||||||
Sbjct 1 TCTACAGATATTTTGGACGAGAAGATTCATCAAAAAGAAAAAAAAAATAATAAAGGACCA 60
Query 60 TTTTAAGGAAGTGAG------AACAAAA-----A---ATGGAGAAGTATGAGATGGTGAA 105
||||| ||||||||| ||||||| | |||||||||||||||||||||||
Sbjct 61 TTTTAGGGAAGTGAGAACAAAAACAAAAGTGGTAGCTATGGAGAAGTATGAGATGGTGAA 120
Query 106 GGATTTGGGATTTGGTAATTTCGGTTTGGCTCGGCTTATGCGTAATAAGCAAACAAACGA 165
|||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 121 GGATTTAGGATTTGGTAATTTCGGATTGGCTCGGCTTATGCGTAATAAGCAAACAAACGA 180
Query 166 GCTTGTGGCTGTCAAATTCATCGATCGAGGCTATAAGATTGATGAGAACGTTGCAAGAGA 225
||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||
Sbjct 181 GCTTGTGGCTGTCAAATTCATCGATCGAGGCTACAAGATAGATGAGAACGTTGCAAGAGA 240
Query 226 AATAATCAATCATAGAGCTCTCAACCATCCCAATA---------TT------GTTGTTCT 270
|||||||||||||||||||||||||||||| |||| || |||||| |
Sbjct 241 AATAATCAATCATAGAGCTCTCAACCATCCGAATATTGTTCGGTTTAAAGAGGTTGTTTT 300
Query 271 AACTCCGACACATCTTGGGATTGTAATGGAGTACGCAGCTGGAGGAGAACTATTTGATCG 330
|||||||||||||||||| || ||||||||||| ||||||||||||||||| || || ||
Sbjct 301 AACTCCGACACATCTTGGAATAGTAATGGAGTATGCAGCTGGAGGAGAACTGTTCGAGCG 360
Query 331 GATATCTAGCGCGGGTCGATTTAGCGAAGCTGAGGCAAGATATTTCTTTCAACAACTCAT 390
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 GATATCTAGCGTGGGTCGATTTAGCGAAGCTGAGGCAAGATATTTCTTTCAACAACTCAT 420
Query 391 CTGTGGAGTCCATTACTTACATGCCA-TGAAAATATGCCACAGAGATCTGAAATTAGAAA 449
|||||||||||||||||||||| || || |||||||||| |||||||||||||||||||
Sbjct 421 TTGTGGAGTCCATTACTTACATG-CATTGCAAATATGCCATAGAGATCTGAAATTAGAAA 479
Query 450 ACACATTGCTTGATGGAAGCCCAGCACCACGTTTAAAAATTTGTGATTTTGGCTACTCAA 509
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 480 ACACATTGCTTGATGGAAGCCCAGCACCACGTTTAAAAATTTGTGATTTTGGCTACTCAA 539
Query 510 AGTCTTCTGTTCTGCATTCCAACCCAAAATCAACGGTGGGAACTCCGGCATATATAGCAC 569
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 540 AGTCTTCTGTTCTGCACTCCAACCCAAAATCAACGGTGGGAACTCCGGCATATATAGCAC 599
Query 570 CGGAAGTTTTTTGTCGATCGGAATACGATGGAAAGTCAGTTGATGTGTGGTCTTGTGGAG 629
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 600 CGGAAGTTTTTTGTCGATCGGAATACGACGGAAAGTCAGTTGATGTGTGGTCTTGTGGAG 659
Query 630 TGGCACTCTATGTTATGTTGGTAGGAGCTTATCCTTTCGAAGACCCTAAAGATCCTCGCA 689
|||| ||||||||||||||||||||||||||||| ||||||||||||||||| |||||||
Sbjct 660 TGGCCCTCTATGTTATGTTGGTAGGAGCTTATCCATTCGAAGACCCTAAAGACCCTCGCA 719
Query 690 ATTTTCGAAAAACTGTTCAGAAAATAATGGCTGTACAGTACAAGATTCCAGGATATGTTC 749
|||| |||||||||||||||||||||||||| ||| | ||||||||||||||||||||||
Sbjct 720 ATTTCCGAAAAACTGTTCAGAAAATAATGGCCGTAAACTACAAGATTCCAGGATATGTTC 779
Query 750 ACATATCAGAAGACTGCAGAAAGTTATTATCTCGTATATTTGTTGCCAATCCGTTACATA 809
||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 780 ACATATCCGAAGACTGCAGAAAGTTACTATCTCGTATATTTGTTGCCAATCCGTTACATA 839
Query 810 GAAGTACGCTTAAAGAGATTAAGAGTCATGCATGGTTCCTAAAGAATTTGCCAAGAGAAC 869
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 840 GAAGTACGCTTAAAGAGATTAAGAGTCATGCATGGTTCCTAAAGAATTTGCCAAGAGAAT 899
Query 870 TAAAGGAGTCAGCACAAGCTATTTATTACCAAAGGAATGTTAATCTTATTAACTTTTCTC 929
|||||||| |||||||||| || ||||||||||||||||||||||||||||| |||||||
Sbjct 900 TAAAGGAGCCAGCACAAGCAATCTATTACCAAAGGAATGTTAATCTTATTAATTTTTCTC 959
Query 930 CTCAAAGAGTAGAGGAGATTATGAAGATAGTTGGTGAGGCAAGAACCATTCCAAACCTTT 989
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 960 CTCAAAGAGTAGAGGAGATTATGAAGATAGTTGGTGAGGCAAGAACCATTCCAAACCTTT 1019
Query 990 CTCGCCCGGTCGAATCGCTTGGACCAGG-AAAGATAGATGATGAAGAAGAAGAATATTTG 1048
||||||||||||||||||||||| ||| ||| | ||||||||| |||||||||||||||
Sbjct 1020 CTCGCCCGGTCGAATCGCTTGGATCAGATAAAAA-AGATGATGATGAAGAAGAATATTTG 1078
Query 1049 GATGCTAATGATGAAGAATGGTATGATGATTACGCATAAACAATAAAAATGTATT-TCAT 1107
|||||||||||||||||||||||||||||||||||||| |||||||||||||||| | ||
Sbjct 1079 GATGCTAATGATGAAGAATGGTATGATGATTACGCATAGACAATAAAAATGTATTAT-AT 1137
Query 1108 GTTGTCAAATTATGAA 1123
||||||||||||||||
Sbjct 1138 GTTGTCAAATTATGAA 1153
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55069997865
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5