BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg481178
Length=1453
Score E
Sequences producing significant alignments: (Bits) Value
AT2G23070.1 | Symbols: | Protein kinase superfamily protein | ... 2409 0.0
> AT2G23070.1 | Symbols: | Protein kinase superfamily protein
| chr2:9823965-9826898 REVERSE LENGTH=1523
Length=1523
Score = 2409 bits (1304), Expect = 0.0
Identities = 1408/1457 (97%), Gaps = 11/1457 (1%)
Strand=Plus/Plus
Query 1 TTaaaaaaaGACATTAATGGCCTTAAGGCCTTGTACTGGATTCACAATCTCCTCTCTTCG 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 12 TTAAAAAAAGACATTAATGGCCTTAAGGCCTTGTACTGGATTCACAATCTCCTCTCTTCG 71
Query 61 TAACGCTTCCGCCGCCAACGACAAtctcttctctctcctctccttctcttcttcgtcgtc 120
|||||||||||||||||| ||||||||||||||||||||||| | || |||||||||||
Sbjct 72 CAACGCTTCCGCCGCCAACAACAATCTCTTCTCTCTCCTCTCC-T-TC-TCTTCGTCGTC 128
Query 121 tccggcgaagaggaatcttcttttctcttcGTTACGA-GACCACCTCCGTCGTTTCGCAT 179
|||||||||||||||||||||| |||||||| | | | ||| | ||||||||||||||||
Sbjct 129 TCCGGCGAAGAGGAATCTTCTTCTCTCTTCGCT-CCAGGACAATCTCCGTCGTTTCGCAT 187
Query 180 CCAGCGCATCTCTTTACCGTCAACATCTACGGAA-C--CAACAACAACAGCAGCAACAAC 236
||||||| |||||||||||||||||||| ||||| | ||||||||||| ||||||||||
Sbjct 188 CCAGCGCTTCTCTTTACCGTCAACATCTCCGGAATCAACAACAACAACATCAGCAACAAC 247
Query 237 AGCAATCGCGCGTGAAAGAGAAATCAGAAACGCTGGCGCAGAAGATCGGAAAATCTATCC 296
||||||||||||||||||| ||||||||||||||||| ||||||||||| ||||||||||
Sbjct 248 AGCAATCGCGCGTGAAAGAAAAATCAGAAACGCTGGCTCAGAAGATCGGTAAATCTATCC 307
Query 297 GGCGTGCCGGTGCGCCGTCGAAAGCTAGGGTTTACGCTGATGTCAACGTTGTTAGACCTA 356
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 308 GGCGTGCCGGTGCGCCGTCGAAAGCTAGGGTTTACGCTGATGTCAACGTTGTTAGACCTA 367
Query 357 AGGATTATTGGGATTACGAGTCTCTTGCTGTTCAATGGGGTGTACAGGATGATTATGAGG 416
|||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 368 AGGACTATTGGGATTACGAGTCCCTTGCTGTTCAATGGGGTGTACAGGATGATTATGAGG 427
Query 417 TGGTGAGGAAGGTAGGAAGGGGAAAATACAGTGAGGTCTTTGAAGGCATTCATGCTACTG 476
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 428 TGGTGAGGAAGGTAGGAAGGGGAAAATACAGTGAGGTCTTTGAAGGCATTCATGCTACTG 487
Query 477 ATAACGAGAAATGCGTTATCAAGATTTTGAAGCCTGTgaagaagaagaagattaagagag 536
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 488 ATAACGAGAAATGTGTTATCAAGATTTTGAAGCCTGTGAAGAAGAAGAAGATTAAGAGAG 547
Query 537 agattaagaTTCTGCAGAACCTCTGCGGTGGGCCAAATATTGTAAAATTGCTCGACATTG 596
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 548 AGATTAAGATTCTGCAGAACCTCTGCGGTGGGCCTAATATTGTAAAATTGCTCGACATTG 607
Query 597 TTAGAGATCAGCAGTCAAAGACACCTAGCTTGATATTTGAACATGTGAACAATAAAGATT 656
|||||||||||||||| ||||| || ||||||||||||||||||||||||||||||||||
Sbjct 608 TTAGAGATCAGCAGTCTAAGACGCCCAGCTTGATATTTGAACATGTGAACAATAAAGATT 667
Query 657 TCAAAGTTCTCTATCCCACTCTCTCAGACTATGATGTTCGATATTACATTTTTGAACTTC 716
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 668 TCAAAGTTCTCTATCCAACTCTCTCAGACTATGATGTTCGATATTACATTTTTGAACTTC 727
Query 717 TAAAGGCGTTGGATTTCTGCCATTCACGTGGAATCATGCACAGAGATGTGAAACCACATA 776
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 728 TAAAGGCGTTGGATTTCTGCCATTCACGTGGAATCATGCACAGAGATGTGAAACCACATA 787
Query 777 ATGTCATGATTGATCACGAGCAGCGGAAACTTCGTTTAATTGACTGGGGTTTGGCAGAAT 836
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 788 ATGTCATGATTGATCACGAGCAGCGAAAACTTCGTTTAATTGACTGGGGTTTGGCAGAAT 847
Query 837 TCTATCATCCTGGGAAAGAATACAATGTCCGTGTTGCTTCAAGGTACTTTAAGGGTCCAG 896
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 848 TCTATCATCCTGGGAAAGAATACAATGTCCGTGTTGCTTCAAGGTACTTTAAGGGTCCAG 907
Query 897 AGCTGCTGGTGGATTTACAGGACTATGACTATTCCTTAGACTTGTGGAGTCTTGGGTGTA 956
|||||||||||||||||||||||||||| |||||||||||| | ||||||||||||||||
Sbjct 908 AGCTGCTGGTGGATTTACAGGACTATGATTATTCCTTAGACCTATGGAGTCTTGGGTGTA 967
Query 957 TGTTTGCTGGAATGATATTCCGCAAGGAGCCGTTCTTTTATGGCCATGACAATTATGATC 1016
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 968 TGTTTGCTGGAATGATATTCCGCAAGGAGCCGTTCTTTTATGGCCATGACAACTATGATC 1027
Query 1017 AATTGGTCAAAATTGCAAAGGTGCTTGGCACAGATGAACTCAACGCCTACCTAAACAAAT 1076
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1028 AATTGGTCAAAATTGCGAAGGTGCTTGGCACAGATGAACTCAACGCCTACCTAAACAAAT 1087
Query 1077 ACCGTATAGAGTTGGACCCTAATCTTACATCCCTCGTGGGCAGACATAGCCGGAAGCCAT 1136
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1088 ACCGTATAGAGTTGGACCCTAATCTAACATCCCTCGTGGGCAGACATAGCCGGAAGCCAT 1147
Query 1137 GGACAAAGTTCATCAATTCTGAAAACCAGCACTTAGCAGTGCCTGAGGCTGTTGATTTTG 1196
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1148 GGACAAAGTTCATCAATTCTGAAAACCAGCACTTAGCAGTTCCTGAGGCTGTTGATTTTG 1207
Query 1197 TGGACAAGTTGCTGAGATATGATCACCAAGAAAGGCCGACGGCTAAAGAAGCAATGGCGC 1256
||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||
Sbjct 1208 TGGACAAGTTGCTGAGATATGATCACCAAGAAAGGCCAACAGCTAAAGAAGCAATGGCGC 1267
Query 1257 ATCCATATTTCTACCCGATTAGAAATGCAGAAAGCAGCCGTACGCCGCGCAGCCAGTGAT 1316
||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1268 ATCCATATTTCTATCCGATTAGAAATGCAGAGAGCAGCCGTACGCCGCGCAGCCAGTGAT 1327
Query 1317 CTCGAAAACGTTTGCTTGTTCAATCTTCTGATTTTTCATTTCTTTACGGATTCATATTTG 1376
||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1328 CTCGAAAACATTTGCTTGTTCAATCTTCTGATTTTTCATTTCTTTACGGATTCAAATTTG 1387
Query 1377 TTATAAATCGATTTGTCATTGTTTCATTCTCTCAAGTGTGCGTGTGTTGCTGCTGTTTCG 1436
|||||||||||| ||||||||||||||||||||||||||||||||||| ||| | ||| |
Sbjct 1388 TTATAAATCGATCTGTCATTGTTTCATTCTCTCAAGTGTGCGTGTGTTACTG-T-TTT-G 1444
Query 1437 CTTTTTCTCAGTGTTTC 1453
|| ||||||||||||||
Sbjct 1445 CTCTTTCTCAGTGTTTC 1461
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 71636177715
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5