BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg481182
Length=1667
Score E
Sequences producing significant alignments: (Bits) Value
AT2G23093.1 | Symbols: | Major facilitator superfamily protein... 2431 0.0
> AT2G23093.1 | Symbols: | Major facilitator superfamily protein
| chr2:9832123-9834739 FORWARD LENGTH=1743
Length=1743
Score = 2431 bits (1316), Expect = 0.0
Identities = 1522/1622 (94%), Gaps = 12/1622 (1%)
Strand=Plus/Plus
Query 1 CTTTCTCCGGCGGATTTACCGGTGACTTTTGGATCGATGGGTGTCGTAATTGAGACATTT 60
||||||||||| ||||||||||||| ||||||||||||||||||||| |||||||| |||
Sbjct 35 CTTTCTCCGGCTGATTTACCGGTGAATTTTGGATCGATGGGTGTCGTTATTGAGACCTTT 94
Query 61 ATTTGGGAACCAAGCTCAAGCTTCTTCATCTTCTTCTTCGTTTCCACATTTTTGTCGATA 120
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 95 ATTTGGGAACCAAGCTCAAGCTTCTTCATCTTCTTCTTCGTTTCCACATTTTTATCGATA 154
Query 121 TTTCTGTTTCCTTACTTCGCCAAGAACAGAACTTTTGGTAGCTTTGATCATTCTATTTCC 180
| ||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||
Sbjct 155 TCTCTGTTTCCTTACTTGGCCAAAAACAGAACTTTTGGTAGCTTTGATCATTCTATTTCC 214
Query 181 TCTTCTTTCGTTCGGTTCCAGAGATGGTTTCTAGCTATCTACACTCTCTCTTCAGTGATG 240
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 215 TCTTCTTTCGCTCGGTTCCAGAGATGGTTTCTAGCTATCTACACTCTCTCTTCAGTGATG 274
Query 241 GAAGGTTTATGGTCAGTGTATGGAGAATTGGAGTTAGCATCTTATGG-TGTAAGTAAGGA 299
|||||||||| ||||||||||||||||||||||||| || ||||||| | ||||||| ||
Sbjct 275 GAAGGTTTATTGTCAGTGTATGGAGAATTGGAGTTAACAACTTATGGCT-TAAGTAAAGA 333
Query 300 ATCAATGGTGTTTTATCTCTGTGTTGGCTATTCGACTGCTCTTGTTCTTGGTCCTTTACT 359
||||||||||||||||||||||||||| |||||||| |||||||||||||||||| ||||
Sbjct 334 ATCAATGGTGTTTTATCTCTGTGTTGGTTATTCGACCGCTCTTGTTCTTGGTCCTGTACT 393
Query 360 TGGTGTGCTTTCTGATCTTATAGGTCAGAAGAGAATTTGCT-TACTCTATTGTGTCTTGC 418
||||||| |||||||||| ||||||||||||| |||||| | ||||||||||||||||||
Sbjct 394 TGGTGTGGTTTCTGATCTCATAGGTCAGAAGAAAATTTG-TCTACTCTATTGTGTCTTGC 452
Query 419 ACCTTGTTGTTGGTGTGTGGAAGAGGATTACAATGAGTCCTAGTGCTTGGTTTGCAAATG 478
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 453 ACCTTATTGTTGGTGTGTGGAAGAGGATTACAATGAGTCCTAGTGCTTGGTTTGCAAATG 512
Query 479 TTTGTCTCTCTCTTGCTGGTCTCGTATATTCGTTTGGGTTTGAGACTTGGCTTGTTGTGG 538
||| |||||| ||||||||||| |||||||| ||||||||||||||||||||||||||||
Sbjct 513 TTTTTCTCTCCCTTGCTGGTCTTGTATATTCATTTGGGTTTGAGACTTGGCTTGTTGTGG 572
Query 539 AACATGAAAAGCAAAGTCAGCGGAATGACTCGTTGAATGAAACATTCTGGTTGATGGCTT 598
|||||||||||||||||||| ||||||||||||| ||||| ||||||||||||||| |||
Sbjct 573 AACATGAAAAGCAAAGTCAGAGGAATGACTCGTTAAATGAGACATTCTGGTTGATGACTT 632
Query 599 TTCTTGAGTCTGCATCTTTAATTGGAGGTCAAGTTCTTGCAAATTGGCTTGTGGATGAAA 658
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 633 TTCTTGAGTCTGCATCTTTAATTGGAGGTCAAGTTCTTGCAAATTGGCTTGTGGGTGAAA 692
Query 659 ATGTTCAGCATGGCATTGCATTGTCTGCTACGGCGTCTCTGTTCTTGTCTATTGTGACTA 718
|||||||| |||| |||||||| |||||||||||||||||| |||||||| |||||||||
Sbjct 693 ATGTTCAGGATGGGATTGCATTATCTGCTACGGCGTCTCTGCTCTTGTCTGTTGTGACTA 752
Query 719 TCATTTGTATTGTCCAGACTGCAAAAGAGCCGTTGAAGACCCTCCCATTTAGGGATTATT 778
| ||||||||||||||||||||||||||||||||||||||||| || |||||||||||||
Sbjct 753 TTATTTGTATTGTCCAGACTGCAAAAGAGCCGTTGAAGACCCTTCCGTTTAGGGATTATT 812
Query 779 CCGCAGCTTTCTATGCATATGTTCTTGGTGATAAAAGAATATGGTTTCTGGGAACTTCAC 838
|| ||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||
Sbjct 813 CCACAGCTTTCTATGCGTATGTTCTTGGTGACAAAAGAATATGGTTTCTGGGAACTTCAC 872
Query 839 AAGCCTGCCTCCAGTTTTCCACTGCAGTCTTTTGGATTCTGTGGGCACCAACCATAGTGG 898
||||||| || ||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 873 AAGCCTGTCTTCAGTTTTCCACTGCAGTCTTTTGGATTCTGTGGGCACCAACAATAGTGG 932
Query 899 CTGACGGGAGAGAAGTGAATCTGGGATTGATATATCCATGTTTCTTGGGTTCAAGAATGC 958
|||| ||| | |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 933 CTGATGGGCGTGAAGTGAATCTGGGATTGATATATCCATGTTTCTTGGGTTCAAGAATGC 992
Query 959 TTGGGAGTACTGTATTCCCATGGCTTATGAGCGGACAATCATTACTTCGTCTTGAAGATT 1018
||||||||||||||||||||||||| ||||| ||||||||||| || || ||||||||||
Sbjct 993 TTGGGAGTACTGTATTCCCATGGCTAATGAGTGGACAATCATTGCTCCGGCTTGAAGATT 1052
Query 1019 GCTTAGTCTACATATATGCAATACTTGGGGTTGTGTTTTCTATAGTAGCCTATGATTATC 1078
|||||||||||||||| ||| |||||||| | ||||||||||||||||||||||||||||
Sbjct 1053 GCTTAGTCTACATATACGCACTACTTGGGATAGTGTTTTCTATAGTAGCCTATGATTATC 1112
Query 1079 AGGAAATCCGAATATTAGTAGTGCTTTTCTGCTTATTTCATGGCTTTGCCGGACTTTCCC 1138
||||||||||||| |||||||| |||||||||||||||||||||||||| ||||| | |
Sbjct 1113 AGGAAATCCGAATCTTAGTAGTACTTTTCTGCTTATTTCATGGCTTTGCTGGACTGGCAC 1172
Query 1139 TTCCTTTGCTTGCAAGATTAAGAACAATGTATGTACCAAATGAATTGCGTGGAGGGATGA 1198
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1173 TTCCTTTGCTTGCAAGATTAAGAACAATGTATGTACCAAATGAATTGCGTGGAGGGATGA 1232
Query 1199 TAAGCCTCTCTCAAGTTCCAGCCAATGCAGCTATTTTGTTTTTCTTAATCCAGAGAGGCT 1258
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1233 TAAGCCTCTCTCAAGTTCCAGCCAATGCAGCTATTTTGTTTTTCTTAATCCAGAGAGGCT 1292
Query 1259 ACTCCAACAAGATTGAGAACCCAACAGTGATGGCTTTTGGTGCCATTTCTTTATTCACTG 1318
|||| |||||||| |||||| ||||| |||||||| ||||||||||||||||||||||||
Sbjct 1293 ACTCTAACAAGATCGAGAACTCAACAATGATGGCTCTTGGTGCCATTTCTTTATTCACTG 1352
Query 1319 CATCTGGTTGTATATATTTACTGAGACGATGGGGAAAGTCACCACACCAAGATTGGCACA 1378
||||||||||||||||| | |||||||||||||||||||||||||||| ||||||||||
Sbjct 1353 CATCTGGTTGTATATATATGTTGAGACGATGGGGAAAGTCACCACACCATGATTGGCACA 1412
Query 1379 AATTATGATCCTGAGTAAGT-GTGTGCTCTCTGGTTATGAGACTTATGCGGAAGAAGGAC 1437
|||||||||||||||||| | ||| | ||||||||||||| ||||||||||||| |||||
Sbjct 1413 AATTATGATCCTGAGTAACTCGTG-G-TCTCTGGTTATGATACTTATGCGGAAGCAGGAC 1470
Query 1438 TAGGCAAATCAAAGACAAACCTAACA--AAACTCAAGGTTGGTATATGATCTAGTGTCAA 1495
||||||| | |||| ||| ||| | ||||||||| ||||| |||||||| |||| ||
Sbjct 1471 AAGGCAAAACGAAGATAAATCTA-CTGGAAACTCAAG-TTGGTCTATGATCTTGTGTTAA 1528
Query 1496 TGGTCTCGCTTCGATTTTGTAGCAGCATGAAGTGAGGAAACACAAAACCTGGGAAGTTCA 1555
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1529 TGGTCTCGCTTCGATTTTGTAGCAGCATGAAGTGAGGAAACACAAAACCTTGGAAGTTCA 1588
Query 1556 AAGATGCAGTGTAAGCAGTATAAGAGGTTTGATTTGTTAGTTTGAGAGGATTCTAttttt 1615
|||||||| || |||||||||||||||||||||| ||||||| ||||||||||||| ||
Sbjct 1589 AAGATGCAATGAAAGCAGTATAAGAGGTTTGATTA-TTAGTTTAAGAGGATTCTATTATT 1647
Query 1616 tt 1617
||
Sbjct 1648 TT 1649
Score = 78.7 bits (42), Expect = 2e-13
Identities = 46/48 (96%), Gaps = 0/48 (0%)
Strand=Plus/Plus
Query 1618 CTTTGGACCTTTTAGGCATTATTGTTTTAAAAGTAAATATGAATGAAA 1665
||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1688 CTTTGGACCTTTTAGGCATTATTGTTTTACTAGTAAATATGAATGAAA 1735
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 82379094345
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5