BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg481189
Length=213
Score E
Sequences producing significant alignments: (Bits) Value
AT2G23171.1 | Symbols: | unknown protein; Has 30201 Blast hits... 244 2e-64
> AT2G23171.1 | Symbols: | unknown protein; Has 30201 Blast hits
to 17322 proteins in 780 species: Archae - 12; Bacteria -
1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses
- 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr2:9866619-9866792
REVERSE LENGTH=174
Length=174
Score = 244 bits (132), Expect = 2e-64
Identities = 160/174 (92%), Gaps = 0/174 (0%)
Strand=Plus/Plus
Query 11 ATGACAATAAATTGCCTAATCACAGCAACATGCCAACGTGGCTCAGACATATGAGTCCCA 70
|||||||||||||||| ||||| || |||||||||||||||| ||||||||| |||||||
Sbjct 1 ATGACAATAAATTGCCCAATCAAAGTAACATGCCAACGTGGCGCAGACATATCAGTCCCA 60
Query 71 CTTGTCTGCCCAAAACTAGCCAAAGATTACGTGTTCATGGTCCCTCATGTCCCCTGTCTC 130
| ||||||||||||||||||||||||||||||| | |||||||| |||||||||||||
Sbjct 61 CATGTCTGCCCAAAACTAGCCAAAGATTACGTGACCGCGGTCCCTCTTGTCCCCTGTCTC 120
Query 131 GGTCTAACCATAACAAACCGAGCCCACTTTTATGTCCACGTGGAATTTCGCTGA 184
|||||||| ||||||||||||||||||||||||||| ||||||||||| |||||
Sbjct 121 GGTCTAACGATAACAAACCGAGCCCACTTTTATGTCGACGTGGAATTTGGCTGA 174
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 9500604561
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5