BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg481192
Length=2609
Score E
Sequences producing significant alignments: (Bits) Value
AT2G23200.1 | Symbols: | Protein kinase superfamily protein | ... 3528 0.0
> AT2G23200.1 | Symbols: | Protein kinase superfamily protein
| chr2:9879276-9881908 FORWARD LENGTH=2633
Length=2633
Score = 3528 bits (1910), Expect = 0.0
Identities = 2412/2648 (91%), Gaps = 60/2648 (2%)
Strand=Plus/Plus
Query 1 GACCACACATGTTTCTTCATCCATTGACCTCAAATACTTGACTTTCCCTCTTTCTCCTTC 60
|||||||||||||| ||||||||||||||||||| ||||||||||| |||||||||||||
Sbjct 2 GACCACACATGTTTTTTCATCCATTGACCTCAAAGACTTGACTTTCTCTCTTTCTCCTTC 61
Query 61 TCTGCATCAAAGCTATGGAGAATTTCTGTTTTCAAAACTCTGTTTCTCTCTTTGTAACGA 120
||||||||||||||||||||||||||||||||||| ||||||||||||| ||| | ||||
Sbjct 62 TCTGCATCAAAGCTATGGAGAATTTCTGTTTTCAAGACTCTGTTTCTCTATTTATCACGA 121
Query 121 TTATGGTTCTTGTTCTTCTTCCTCGTCTCAGTCTTTCTGCTACTTCGACGTACACTCGTC 180
| ||||||||||||||||| || |||||||||||||||| ||||||||||||||| ||||
Sbjct 122 TCATGGTTCTTGTTCTTCTCCCCCGTCTCAGTCTTTCTGATACTTCGACGTACACCCGTC 181
Query 181 CTGAGAAGTTTTACGTCAACTGTGGATCGGATTCTAATGTCTTTTATGGTGGTCAGACCT 240
||||||| |||||||||||||||||||||||||||||||| ||||||||||| |||||||
Sbjct 182 CTGAGAATTTTTACGTCAACTGTGGATCGGATTCTAATGTATTTTATGGTGGCCAGACCT 241
Query 241 TTGTTGGAGATAATAACTTC-AGTGGTAACTCTGTTTCCTTCACC-A-ATA-GAACTGAA 296
| || ||||||| ||| || ||| |||||| |||||||||||| | | | ||||||||
Sbjct 242 TCGTCGGAGATACCAAC-TCGAGTACTAACTCAGTTTCCTTCACCAACAAAGGAACTGAA 300
Query 297 GTCATCGACAACCAATCGTCCGTTGCGCCTGAAATCTACCGGACGGTTAGGATATTCAGA 356
|||||| || ||||||||||||||||||||||||| |||||||||||||||||||| |||
Sbjct 301 GTCATCAACGACCAATCGTCCGTTGCGCCTGAAATATACCGGACGGTTAGGATATTTAGA 360
Query 357 CGCCCTTCTTCTTACAAGTTCAAACTTGATTCTCTTGGTCTGCACTTTGTGCGTCTCCAT 416
| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 361 CACCCTTCTTCTTACAAGTTCAAACTTGATTCTCTGGGTCTGCACTTTGTGCGTCTCCAT 420
Query 417 TTCTCTGTTGTGTTATCTCGGGCAGATCTTTTAACTGCTCGGTTCACTGTCTCTGCAACT 476
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 421 TTCTCTGTTGTGTTTTCTCGGGCAGATCTTTTAACTGCTCGGTTCACTGTCTCTGCTACC 480
Query 477 TCTGGTTCTAATCATCACTTGAAAAGTTTCCCGCTTCAGAATTTCACTGAGACCCCACGA 536
|||||||||||||||||||||||||||||| ||| ||||||| ||||| | |||||||||
Sbjct 481 TCTGGTTCTAATCATCACTTGAAAAGTTTCTCGCCTCAGAATCTCACTAATACCCCACGA 540
Query 537 GTTGAAGAGTTTTTCCTGATGATGGACTCGCTGGAGTTCGAAATTCGATTAGTGCCTAAT 596
|||||||||||| ||||||||||| ||||||||||||||||||||||||| ||||| ||
Sbjct 541 GTTGAAGAGTTTCTCCTGATGATGAACTCGCTGGAGTTCGAAATTCGATTTGTGCCCGAT 600
Query 597 CATTCCTCTTTGGCTTTCGTCAATGCCATTGAAGTGTTCTCTGCTCCTAATGACCTCGAA 656
||||||||||| ||| || |||||||||| |||||||||||||||||| |||||||||||
Sbjct 601 CATTCCTCTTTAGCTCTCATCAATGCCATCGAAGTGTTCTCTGCTCCTGATGACCTCGAA 660
Query 657 AT-TCAGCCAGATTTCGACAAGAATCTGCATACGATTTACAGATTAAACGTAGGAGGCGA 715
|| || ||| || ||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 661 ATCCCA-TCAGCTTCCGATAAGAATCTGCATACGATTTACAGATTAAACGTAGGAGGCGA 719
Query 716 GAAAATCACACCGGATAATGATACTTTGGGACGAACTTGGTC-GCCTGATGATGAAGACT 774
||||||||| |||||||||||||| ||||||||||||||| | |||||| ||||| ||||
Sbjct 720 GAAAATCACTCCGGATAATGATACCTTGGGACGAACTTGG-CTGCCTGACGATGATGACT 778
Query 775 TTCTCTACCGAAAAGATTCTGCGAGGAACATTAATTCAACACAAACGCCTAACTAC---- 830
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 779 TTCTCTACCGAAAAGATTCAGCGAGGAACATTAATTCAACACAAACGCCTAACTACGTGG 838
Query 831 -----------TCAGCCACGGAATTCACTGCTCCTGCTTTCGTCTACAAGACAGCTAAAG 879
||||||||||| | ||||||||||| |||||||||||||||||||||||
Sbjct 839 GAGGGTTAAGTTCAGCCACGGACTCCACTGCTCCTGATTTCGTCTACAAGACAGCTAAAG 898
Query 880 CAATGAACCGCAGCTCGAATGAGCGGGTGGGGATGTTGACGAATGTTACATGGTCGTTCA 939
|||||||||| ||||||||||||| |||||||||||||| ||||||||||||||||||||
Sbjct 899 CAATGAACCGTAGCTCGAATGAGCAGGTGGGGATGTTGATGAATGTTACATGGTCGTTCA 958
Query 940 AGGTCAAAAGTAACTATAAACACTTCATCAGGCTTCATTTCTCTGATATTTTAAGTAACT 999
|||||||||||||| ||| ||||||||||||| ||||||| ||||||||||| || ||||
Sbjct 959 AGGTCAAAAGTAACCATAGACACTTCATCAGGATTCATTTTTCTGATATTTTGAGCAACT 1018
Query 1000 TCTCAAACTCCGACTCCGATTTCTCTCTCTATGTAAATGGGTACTGGCGAGTAGATGTAA 1059
| |||||||||||||||||||||| ||||| |||||||||||| ||||||||||||||||
Sbjct 1019 TATCAAACTCCGACTCCGATTTCTATCTCTTTGTAAATGGGTATTGGCGAGTAGATGTAA 1078
Query 1060 AGCCTTCAGACCAGCCTAAGTTGGCAACTCCGTTTTTTATCGATGTCGTGAATGTCTCTG 1119
|||||||||| ||||||| |||||| | ||||||||||| |||||||||||||||||||
Sbjct 1079 AGCCTTCAGAGCAGCCTAGGTTGGCGAGTCCGTTTTTTAAGGATGTCGTGAATGTCTCTG 1138
Query 1120 ATGGTTCTGGACTCTTGAATATTAGTATAGGTACTAAGGAGGCCGATAAAGATGCTGGTT 1179
|||||||||||||||||||||| ||||||||||| ||||||||| |||| ||||||||||
Sbjct 1139 ATGGTTCTGGACTCTTGAATATCAGTATAGGTACCAAGGAGGCCAATAAGGATGCTGGTT 1198
Query 1180 TTCTGAATGGTCTGGAGATGATGGAGTTTTTGATTAAATCTGGTTCTGATTCTTCAAATA 1239
|||||||||||||||||||||||||| |||||| ||||||||||||||||| ||||||||
Sbjct 1199 TTCTGAATGGTCTGGAGATGATGGAGGTTTTGAGTAAATCTGGTTCTGATTATTCAAATA 1258
Query 1240 GAAGCAGTTCCCGGGTTCATATCATCGCTGG-T-TG-TGTT--T-CTGCTGCTGCATCGG 1293
||||||||||||||||||| |||||| |||| | || |||| | ||||||||||||| |
Sbjct 1259 GAAGCAGTTCCCGGGTTCACATCATCACTGGTTGTGCTGTTGCTGCTGCTGCTGCATCAG 1318
Query 1294 CTCTGGTCTTGAGTTTGTTGTTTATGGTATTCTTGAAGAGGAGGAGATCGAAGAAGACTA 1353
|| ||||||| |||||| |||||||||||||||||||| |||||||||||||||||||||
Sbjct 1319 CTTTGGTCTTCAGTTTGCTGTTTATGGTATTCTTGAAGCGGAGGAGATCGAAGAAGACTA 1378
Query 1354 AGCCAGACGTTGAGGGCACTGTATGGTCTCCTTTGCCATTGCACAGAGGTGGAAGTTCAG 1413
||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1379 AGCCAGAGGTTGAGGGCACTGTATGGTCTCCTTTGCCATTGCACAGAGGTGGGAGTTCAG 1438
Query 1414 ACAATAGACCTATCTCTCAATACCACAACTCGCCATTACGCAACCTACACTTAGGCTTAA 1473
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1439 ACAATAGACCTATCTCTCAATACCACAACTCCCCATTACGCAACCTACACTTAGGCTTAA 1498
Query 1474 CGATTCCCTTCACAGACATTCTGAGCGCTACAAACAATTTCGACGAGGAGTTGTTGATCG 1533
|||||||||||||||||||||| |||||||||||||| ||||||||| ||||||||||||
Sbjct 1499 CGATTCCCTTCACAGACATTCTAAGCGCTACAAACAACTTCGACGAGCAGTTGTTGATCG 1558
Query 1534 GGAAAGGCGGGTTCGGAGATGTTTACAAAGCTATTCTTCCCGATGGAACCAAAGCCGCGA 1593
||||||||||||| || | |||||||||||||||||||||||||||||||||||||| |
Sbjct 1559 GGAAAGGCGGGTTTGGCTACGTTTACAAAGCTATTCTTCCCGATGGAACCAAAGCCGCTA 1618
Query 1594 TCAAAAGAGGCAAGACCGGTTCAGGACAAGGCATCTTAGAGTTTCAAACCGAGATTCAAG 1653
||||| ||||||| ||||| ||||||||||| ||||||||||||||||||||||||||||
Sbjct 1619 TCAAACGAGGCAAAACCGGCTCAGGACAAGGGATCTTAGAGTTTCAAACCGAGATTCAAG 1678
Query 1654 TCCTCTCAAGAATCCGGCACAAACACCTCGTCTCTCTAACGGGCTACTGCGAAGAAAACT 1713
|||||||||||||||| || | |||||||||||| |||||||| ||||||||||||||||
Sbjct 1679 TCCTCTCAAGAATCCGACATAGACACCTCGTCTCGCTAACGGGATACTGCGAAGAAAACT 1738
Query 1714 CGGAAATGATCCTCGTCTACGAGTTTATGGAGAAAGGTACACTTAAAGAACATCTATACG 1773
| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1739 CCGAAATGATCCTCGTCTACGAGTTTATGGAGAAAGGTACACTCAAAGAACATCTATACG 1798
Query 1774 GCTCGAATCTACCTCCCTTGTCATGGAAACAAAGACTAGAGATCTGCATTGGAGCAGCTA 1833
|||||||||||||| | || |||||||||||||||||||||| ||||||||||||||||
Sbjct 1799 GCTCGAATCTACCTTCATTAACATGGAAACAAAGACTAGAGATATGCATTGGAGCAGCTA 1858
Query 1834 GAGGTTTACATTATCTCCACAGT--TG-CGCAGAAGGAGTAATCATACACAGAGACGTCA 1890
|||||||| |||||||||||||| || | ||||||||| |||||| |||||||||||||
Sbjct 1859 GAGGTTTAGATTATCTCCACAGTAGTGGCTCAGAAGGAGCAATCATTCACAGAGACGTCA 1918
Query 1891 AATCAACAAACATACTACTAGACGAGAACACTACAGCCAAAGTCGCCGATTTCGGACTCT 1950
|||||||||||||| ||||||||||| ||| || ||| |||||||| ||||||||| | |
Sbjct 1919 AATCAACAAACATATTACTAGACGAGCACAATATAGCAAAAGTCGCAGATTTCGGATTAT 1978
Query 1951 CGAAACTCACGATTCGTAATCAAGATCCAA-CTAATATCAGCCTAAACATCAAAGGAACA 2009
||||| | ||| |||||||||| || | ||||||||| |||||||||||||||||
Sbjct 1979 CGAAA---A---TTCATAATCAAGATGAAAGC-AATATCAGCATAAACATCAAAGGAACA 2031
Query 2010 TTCGGTTACTTAGATCCAGAGTATCTCCAAACACATATCTTAACAGAGAAATCTGACGTT 2069
||||||||||| |||||||| |||||||||||||||| |||||||||||||| || |||
Sbjct 2032 TTCGGTTACTTGGATCCAGAATATCTCCAAACACATAAATTAACAGAGAAATCAGATGTT 2091
Query 2070 TACGCATTCGGAGTCGTCCTCCTCGAGGTTTTGTTAGCGAGACCAGCTCTAGATTGT-A- 2127
||||||||||||||||||||||||||||| |||| |||||||||||| ||||| | |
Sbjct 2092 TACGCATTCGGAGTCGTCCTCCTCGAGGTACTGTTCGCGAGACCAGCTATAGATCCTTAT 2151
Query 2128 CTGTGCGTTACGAAGAAGCGAATCTAGCGGAATGGGCGTTGTTCTGCAAATCAGAAGGTA 2187
|| | | | ||||||||| ||||||| ||||||||| | |||||||||||||| ||||||
Sbjct 2152 CT-TCC-TCACGAAGAAGTGAATCTATCGGAATGGGTGATGTTCTGCAAATCAAAAGGTA 2209
Query 2188 AAATCGATGAGATCTTAGATCCGAGTTTGATAGGTCAAATCGAGACGAATTCTTTGAAGA 2247
||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||
Sbjct 2210 CAATCGATGAGATCTTAGATCCGAGTTTGATAGGTCAAATTGAGACGAATTCGTTGAAGA 2269
Query 2248 AATTCATGGAGATTGCTGAGAAATGTTTGAAAGAGCGTGGAGATGAGAGACCGAGTATG- 2306
|||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 2270 AATTCATGGAAATTGCTGAGAAATGTTTGAAAGAGTATGGAGATGAGAGACCGAGTATGA 2329
Query 2307 GGAGATGTGATTTGGGATCTTGAGTATGTTCTTCAGCTTCAGATGATGCCGATTCGTAGA 2366
|| ||||||||||||||||||||||||||||||||||| ||||||||| ||| |||| ||
Sbjct 2330 GG-GATGTGATTTGGGATCTTGAGTATGTTCTTCAGCTACAGATGATGACGAATCGTCGA 2388
Query 2367 GAGGCTCATGAAGAAGATAGTACGGCGATTG-TCTCCTCTGGTGGTTCGTTGGTGGCTCC 2425
|||||||||||||||||||||||||||||| | ||| |||||||||||||| |||||
Sbjct 2389 GAGGCTCATGAAGAAGATAGTACGGCGATTAAT-TCC---GGTGGTTCGTTGGTTGCTCC 2444
Query 2426 GAGGTTGATGGTGAGTGATTCGTTTAGCGCGAACTCGTT-TGTTCAGAA-GGATGATGAA 2483
||||||||||||||||||||||||||| |||||||| | | ||||||| || |||||||
Sbjct 2445 GAGGTTGATGGTGAGTGATTCGTTTAGTACGAACTCGATAT-TTCAGAATGG-TGATGAA 2502
Query 2484 TCGAAGAACAGATTTGGATTTACGGATTCGTCGGAGACTCGAGTTTTTTCGCAGTTGAAG 2543
||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||
Sbjct 2503 TCGAAGAACAGATTTGGATTTACAGATTCATCGGAGACTCGAGTTTTTTCGCAGTTGAAG 2562
Query 2544 ATCTCTGACGCAAGATGATGAAATGATTTT-CAATTGTGTGTAAAATTATAAATTTCTT- 2601
|||||||| ||||||||||||||| ||| ||||||||||||||||||||| ||| ||
Sbjct 2563 ATCTCTGATGCAAGATGATGAAATC-TTTCGCAATTGTGTGTAAAATTATAATTTT-TTC 2620
Query 2602 GAAATGTG 2609
||||||||
Sbjct 2621 GAAATGTG 2628
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 129531046826
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5