BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg481194
Length=1824
Score E
Sequences producing significant alignments: (Bits) Value
AT2G23230.1 | Symbols: | Terpenoid cyclases/Protein prenyltran... 2564 0.0
> AT2G23230.1 | Symbols: | Terpenoid cyclases/Protein prenyltransferases
superfamily protein | chr2:9892716-9895400 FORWARD
LENGTH=1821
Length=1821
Score = 2564 bits (1388), Expect = 0.0
Identities = 1677/1811 (93%), Gaps = 42/1811 (2%)
Strand=Plus/Plus
Query 1 ATGGAAACCTTGACCA-TTTTTGGACAAAAATGTGGAACTCAAGTCTCTCTTCTTTCTCC 59
||| ||||||||| || ||||||||| ||||| |||||||||||||||||||||||||||
Sbjct 1 ATGAAAACCTTGA-CATTTTTTGGACCAAAATATGGAACTCAAGTCTCTCTTCTTTCTCC 59
Query 60 -AAGTGCGGTGAGCAAACTCTCTCGCTTTCCACTGACATCATTTGCTCGTAAACCTACAA 118
|| || ||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 60 GAA-TGTGGTGAGCAAACTCTCTCGCTTTCCACTGACATCATTTGCTCGTAAGCCTACAA 118
Query 119 AGCAGGTTTGTTTGAAGACTACGGATTGTGACCTTGATGAAAGTAAGCGTACGTTTAACA 178
||| ||| ||| |||||||||||||||||||||||| ||||||| |||||||||||||||
Sbjct 119 AGCCGGTATGTGTGAAGACTACGGATTGTGACCTTGTTGAAAGTCAGCGTACGTTTAACA 178
Query 179 AGTTTCCACGTTCTGACTGGGGTGATCATTTCCTTCGTCTTCCCATCAATGTCTCAGATA 238
||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 179 AGTTTCCACGTTCGGACTGGGGTGATCATTTCCTTCGTCTTCCCTTCAATGTCTCAGATA 238
Query 239 TGGATACGCTTACAAGAGAGATGAACGCACTAAAGCCTACAATAAGGAAGATGCTCATGT 298
|||||| |||||||| ||||||||||||||||||| ||||||||||||||||||| ||||
Sbjct 239 TGGATATGCTTACAATAGAGATGAACGCACTAAAGTCTACAATAAGGAAGATGCTTATGT 298
Query 299 ATTCACAAGACGTGGAGGAGACAAAGAAGAGAATTCTTCTAATCTATTTGCTGGTCGCAC 358
|||||||||||||||||||||||||| ||||||||||| |||| ||||||||||| ||||
Sbjct 299 ATTCACAAGACGTGGAGGAGACAAAGGAGAGAATTCTTATAATATATTTGCTGGTTGCAC 358
Query 359 TTGGTGTGGCATACCACTTTGAGGATGAGATAGATGATAATCTGAAACACAGCTTCGAAA 418
||||| ||||||||||||| |||||||||||||||||||||||||||||| |||||||||
Sbjct 359 TTGGTATGGCATACCACTTCGAGGATGAGATAGATGATAATCTGAAACACGGCTTCGAAA 418
Query 419 AGATAGAGACCATTATGGCCGGTGAAATTGACTTGTCGACAGTTTCGGTCATGTTTTGGG 478
| |||||||||| |||||||||||||| ||||||||| || |||||||||||||||||||
Sbjct 419 ATATAGAGACCACTATGGCCGGTGAAAATGACTTGTCCACGGTTTCGGTCATGTTTTGGG 478
Query 479 TTTTTAGGACATATGGATATAACTTGTCTT-C--T---G-ATGTGTTTAGGAGATTTAAA 531
||| ||||||||||||||||||||||||| | | | || |||||||||||||||||
Sbjct 479 -TTTCAGGACATATGGATATAACTTGTCTTCCGGTAAGGAATATGTTTAGGAGATTTAAA 537
Query 532 GGGAAAGATGGGAAGTTTGAAAAATGTCTTA-AAGAAGATGTCAAAGGTCTGCTAATTTT 590
||| | ||||| ||||||||| |||||| || || ||||||||||||||||||||| |||
Sbjct 538 GGGGAGGATGGAAAGTTTGAAGAATGTCATACAA-AAGATGTCAAAGGTCTGCTAAGTTT 596
Query 591 GTATGAAGCCACACAATTGGGTACAAGCACTGAGGATATTTTGGACGAAGCGATGAGCTT 650
|||||||||| |||||||||||||||||||||| ||||||||||||||||||||||| ||
Sbjct 597 GTATGAAGCCGCACAATTGGGTACAAGCACTGAAGATATTTTGGACGAAGCGATGAGTTT 656
Query 651 CGCGTCGAGCCACTTGGAGTGTTTATTAGCAGGTGGAACGTGCCCGCCTCATATCTCAAG 710
| ||||||| ||||||||||| | |||||||||||||||||||||||||||||||||||
Sbjct 657 CTCGTCGAGTCACTTGGAGTG--T-TTAGCAGGTGGAACGTGCCCGCCTCATATCTCAAG 713
Query 711 GCTTATACGAAATGCA-CTTTACATGCCTCAGCACCACAATTG-TGAAATATTATTCGCA 768
|||||||| ||||| | ||||||||||||||||||||||| || ||||||||||||||||
Sbjct 714 GCTTATACAAAATG-AGCTTTACATGCCTCAGCACCACAA-TGCTGAAATATTATTCGCA 771
Query 769 AGCGAATACATTTGGTTCTATGAACAAGAAGATGTTCACAACAAAGTCCTACTTGAGTTC 828
||||||||||||| |||||| ||||||||||||||||||||||||||||||| ||||||
Sbjct 772 AGCGAATACATTTCCTTCTATAAACAAGAAGATGTTCACAACAAAGTCCTACTCGAGTTC 831
Query 829 GCCAAGCTCAATTTCAAGTTCCTTCAACTCCATTGGATTCATGAGCTGAAAATTCTCACC 888
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 832 GCCAAGCTCAATTTCAAGTTCCTTCAACTCCATTGGATTCACGAGCTGAAAATTCTCACC 891
Query 889 AAATGGTGGAATGACCAAGATCTTTTATCTAAGCTCCCACCTTACTTTAGAGACAGACTG 948
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 892 AAATGGTGGAATGATCAAGATCTTTTATCTAAGCTCCCACCTTACTTTAGAGACAGAATG 951
Query 949 GTGGAGTGCCATTTATATGGAGTGATT-ATGTATTTCGAGCCAAAATATTCATTTGGCAG 1007
||||||||||||||||||| ||||||| || |||||||||||| ||||||||||||||||
Sbjct 952 GTGGAGTGCCATTTATATGCAGTGATTTAT-TATTTCGAGCCACAATATTCATTTGGCAG 1010
Query 1008 AATCATATTGGCTAAGTTACTGGTGCTCTTGACCGTTGTCGATGACACGTGTGATAGATA 1067
|||||| |||||||||||| |||| |||||||||||||||||||| ||||| || |||||
Sbjct 1011 AATCATGTTGGCTAAGTTATTGGTACTCTTGACCGTTGTCGATGATACGTGCGACAGATA 1070
Query 1068 TGGTTCTGTTCCTGAGGTTGCAAAGCTTCTTGATTGCGTCGAAAGATGGGATCCAGATCT 1127
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||
Sbjct 1071 TGGTTCTGTTCCTGAGGTTGCAAAGCTTCTTGATTGTGTCGAAAGATGGGATCCAGAACT 1130
Query 1128 TGTGGAGAGTCTGCCAGATTA-CATGAAAACCGTCTTCAAGTTTACTTTGGACGTTTTTG 1186
|| |||||||||||||||||| | |||||||||||||||||||||||||||| |||||||
Sbjct 1131 TGGGGAGAGTCTGCCAGATTATC-TGAAAACCGTCTTCAAGTTTACTTTGGATGTTTTTG 1189
Query 1187 AAGATTGTGAACGAGCGGGGATGTGTGAAGAAGGAC-AGAGCTTCAATGTGGAAGGTGCA 1245
||||||||||||||||||||| | |||||||||||| | ||||||||||| || ||||||
Sbjct 1190 AAGATTGTGAACGAGCGGGGAAGAGTGAAGAAGGACTA-AGCTTCAATGTCGATGGTGCA 1248
Query 1246 TTAGCAGAGTTCAAGATACTCCAGCGAACCCATCTTAGCTTTGCTGAGTGGGCAGCGGCA 1305
||||| ||| | || || ||| | | | | | |||||| |||||||||||||||
Sbjct 1249 TTAGCCGAG--C--GA-AC-CCA-C---C---T-TAA-CTTTGCCGAGTGGGCAGCGGCA 1293
Query 1306 GAAAAGGTGCCAACAGTTGAAGAGTATTTGGAGGTTGGGGGCGTGGGGGTCACAATGTAT 1365
||||| |||||||||||||||||||||||||||||||||||||| | |||||||||||||
Sbjct 1294 GAAAAAGTGCCAACAGTTGAAGAGTATTTGGAGGTTGGGGGCGTAGCGGTCACAATGTAT 1353
Query 1366 GCAACTATAGCATTGGGTTTTCTCGGGTTGGGACCGAGGGCTAGGGAACAAGGTTATGAG 1425
||||||||||||||||| |||||||||| ||||||| |||||||||||| |||||||||
Sbjct 1354 GCAACTATAGCATTGGGACTTCTCGGGTTAGGACCGAAGGCTAGGGAACACGGTTATGAG 1413
Query 1426 TGGCTAAAATCTAGACCAAAACTCCTTCATGATTTGGCAACAAAGGGTCGTCTGATGAAT 1485
|||||||||||||||||||||||| |||| |||||||||||||| |||||||||||||||
Sbjct 1414 TGGCTAAAATCTAGACCAAAACTCGTTCACGATTTGGCAACAAAAGGTCGTCTGATGAAT 1473
Query 1486 GACATGGGAGGCTTCAAGGATGACATTGGAAGAGGTTTTATCGCAAACGCAGTCAACTAT 1545
||||||||||||||||||||||||||||| |||||||| ||||||||| ||||||||||
Sbjct 1474 GACATGGGAGGCTTCAAGGATGACATTGGTCGAGGTTTTCTCGCAAACGTAGTCAACTAT 1533
Query 1546 TATATGAAGGAATATGGAGCTACCGAAGAGGAAACATATAAGGAGTTTCATAAAATAGTT 1605
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1534 TATATGAAGGAATATGGAACTACCGAAGAGGAAACATATAAGGAGTTTCATAAAATAGTT 1593
Query 1606 AGAGACCTGGAGAAGTCGGTGAACTCGGAGTTCTTGAAGATAAATAAAGGAGTGCCTCGC 1665
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1594 AGAGACCTCGAGAAGTCGGTGAACTCGGAGTTCTTGAAGATAAATAAAGGAGTGCCTCGC 1653
Query 1666 GAGATCCTATCGCGAGCCATTAATTGTGGGAAAATGATCGATGTTACCTACAGATCCGGT 1725
|| |||||||| || ||| |||||||||||||||||||||||||||| ||||||||||||
Sbjct 1654 GAAATCCTATCTCGGGCCCTTAATTGTGGGAAAATGATCGATGTTACTTACAGATCCGGT 1713
Query 1726 GACGGGTACACTCGGCCCAAAGGAAAATTCACAGAGTATGTCGAATCATTGTTTGTCGAC 1785
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1714 GACGGGTACACTCGGCCCAGAGGAAAATTCACAGAGTATGTCGAATCATTGTTTGTCGAG 1773
Query 1786 CACATGGATGC 1796
|||||||||||
Sbjct 1774 CACATGGATGC 1784
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 90260579910
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5