BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg481200
Length=1096
Score E
Sequences producing significant alignments: (Bits) Value
AT2G23290.1 | Symbols: AtMYB70, MYB70 | myb domain protein 70 |... 1498 0.0
AT4G37260.1 | Symbols: MYB73, ATMYB73 | myb domain protein 73 |... 374 1e-102
> AT2G23290.1 | Symbols: AtMYB70, MYB70 | myb domain protein 70
| chr2:9904787-9905920 REVERSE LENGTH=1134
Length=1134
Score = 1498 bits (811), Expect = 0.0
Identities = 1028/1125 (91%), Gaps = 46/1125 (4%)
Strand=Plus/Plus
Query 1 AAATCCACAAACAAAAGAAACGCGTTTTAAACGATTTGATTA---TT---TT----A-AA 49
|||||| ||||||| ||||||||||||||||||||||||||| || || | ||
Sbjct 27 AAATCCCCAAACAATAGAAACGCGTTTTAAACGATTTGATTAGTTTTAAATTAAAAAGAA 86
Query 50 -AT-----CGATGCCTGGTTCGACCCGGAAAGAAATGGATCGGATCAAAGGACCATGGAG 103
|| ||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 87 GATCCGAGCGATGTCTGGTTCGACCCGGAAAGAAATGGATCGGATCAAAGGACCATGGAG 146
Query 104 TCCTGAAGAAGACGATCTGTTACAAACGCTGGTTCAAAAGCACGGACCAAGGAACTGGTC 163
||||||||||||||||||||||||| || ||||||| |||||||||||||||||||||||
Sbjct 147 TCCTGAAGAAGACGATCTGTTACAATCGTTGGTTCAGAAGCACGGACCAAGGAACTGGTC 206
Query 164 TCTGATAAGCAAATCAATCCCTGGGCGTTCCGGTAAATCTTGTCGTCTCCGGTGGTGTAA 223
|||||||||||||||||||||||| ||||||||||||||||| |||||||| ||||||||
Sbjct 207 TCTGATAAGCAAATCAATCCCTGGACGTTCCGGTAAATCTTGCCGTCTCCGTTGGTGTAA 266
Query 224 TCAGCTGTCTCCGGAGGTAGAGCACCGTGGATTCACGGCGGAGGAAGACGATACAATTAT 283
|||||| ||||||||||||||||||||||||||||||||||||||||| ||||| |||||
Sbjct 267 TCAGCTTTCTCCGGAGGTAGAGCACCGTGGATTCACGGCGGAGGAAGATGATACGATTAT 326
Query 284 ACTAGCCCACGCTCGGTTCGGTAACAAGTGGGCTACGATTGCACGGCTTCTCAATGGTCG 343
|||||| ||||||||||| |||||||||||||| ||||||||||||||||||||||||||
Sbjct 327 ACTAGCGCACGCTCGGTTTGGTAACAAGTGGGCGACGATTGCACGGCTTCTCAATGGTCG 386
Query 344 CACCGATAACGCGATTAAGAATCATTGGAACTCAACGCTGAAGCGGAAATGTAGCGGCGG 403
||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 387 CACTGATAACGCGATTAAGAATCACTGGAACTCAACGCTGAAGCGGAAATGTAGCGGCGG 446
Query 404 CGGCGGTGGCGGTGGAGAGGAAGGGCAGAGTTGTGATTTCGGTGGTAATGGAGGGTATGA 463
||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 447 AGGCGG---CGGAGGAGAGGAAGGGCAGAGTTGTGATTTCGGTGGTAATGGAGGGTATGA 503
Query 464 TGGTAATTTAACAGATGAAAAGCCGTTAAAACGGACGGCTAGTGGAGGAGGTGGAGGAGT 523
|||||||||||| |||||||| ||||||||||||| ||| ||||| ||||| |||| ||
Sbjct 504 TGGTAATTTAACTGATGAAAAACCGTTAAAACGGAGGGCGAGTGGTGGAGGAGGAGTTGT 563
Query 524 TGTGTTGACGGCGTTAAGTCCAACGGGATCTGACGTCAGCGAGCAATCGCAATCTAGTGG 583
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 564 TGTGGTGACGGCGTTAAGTCCAACGGGATCTGACGTCAGCGAGCAATCGCAATCTAGTGG 623
Query 584 ATTTGTTTTGCCGGTTTCTTCTTCTTCACATGTTTTTAAACCGACGGCGAGAGCTGGTGG 643
|| |||||| |||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 624 ATCTGTTTTACCGGTTTCTTCTTCTTGTCATGTTTTTAAACCGACGGCGAGAGCTGGTGG 683
Query 644 AGTGGTGATTGAGTCATCGTCG--G-AGGAGGAGGAGAAAGATCCGATGACTTGTTTGAG 700
|||||||||||||||||| ||| | ||||||||||||||||||||||||||||||||||
Sbjct 684 AGTGGTGATTGAGTCATCATCGCCGGAGGAGGAGGAGAAAGATCCGATGACTTGTTTGAG 743
Query 701 TTTGTCTTTGCCTTGGGTCAACGAGTCAAC---TCCGGTGGAGTTGTTTCCGGTgaagag 757
|||||||||||||||||||| |||||||| ||| |||||||||||||||||||||
Sbjct 744 GTTGTCTTTGCCTTGGGTCAATGAGTCAACAACTCCACCGGAGTTGTTTCCGGTGAAGAG 803
Query 758 agaagaagaaga-ga-a-ggaaagagagaTTTCTGGATTTGGTGAAGATTTTATGACGGT 814
|||||||||||| || | ||||||||||||||||||| |||||| |||||||||||||||
Sbjct 804 AGAAGAAGAAGAAGAGAAGGAAAGAGAGATTTCTGGACTTGGTGGAGATTTTATGACGGT 863
Query 815 GGTGCAGGAGATGATTAAGACGGAGGTTAGGAGTTATATGGCGGATTTACAGCGAGGGAA 874
|||||||||||||||||||||||||||||||||||| |||||||||||||||| ||| ||
Sbjct 864 GGTGCAGGAGATGATTAAGACGGAGGTTAGGAGTTACATGGCGGATTTACAGCTAGGAAA 923
Query 875 CGGCGGAGGAACTGGCGGCGGAGGAGGAGGAAGTTTGTGTATGGTGCAAGGAACTAATGG 934
|||||||||| |||| |||||||| ||||| ||||||||||||||||||||||||
Sbjct 924 CGGCGGAGGAGCTGG------AGGAGGAGCAAGTTCGTGTATGGTGCAAGGAACTAATGG 977
Query 935 TCGTAATGTAGGGTTTAGAGAGTTTATTGGAATAGGTAAGATCGAGTAGTGAGAAAGAGA 994
||||||||||||||||||||||||||||||| |||||| |||||||||||||| ||||
Sbjct 978 TCGTAATGTAGGGTTTAGAGAGTTTATTGGATTAGGTAGGATCGAGTAGTGAGT--GAGA 1035
Query 995 AAATGCGCAAAGAATTGTGTAGCAAATGCAGAGAAAGAGAGCCAATTTCATGATTTGAGA 1054
||| | | || |||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1036 AAA-GAG-AA-GAATTGTGTAGCAAATGCAGAGAAAGAG--CCAATTTCATGATTTGAGA 1090
Query 1055 TT-GAATTCATTCGAATAAAA--CTGAATAAATGTATTGATTTTG 1096
|| || |||||||||| |||| ||||||||||||||||||||||
Sbjct 1091 TTTGA-TTCATTCGAAAAAAAAACTGAATAAATGTATTGATTTTG 1134
> AT4G37260.1 | Symbols: MYB73, ATMYB73 | myb domain protein 73
| chr4:17540490-17541799 FORWARD LENGTH=1310
Length=1310
Score = 374 bits (202), Expect = 1e-102
Identities = 424/524 (81%), Gaps = 44/524 (8%)
Strand=Plus/Plus
Query 64 CGACCCGGAAAGAA-ATGGATCGGATCAAAGGACCATGGAGTCCTGAAGAAGACGATCTG 122
|||||| | ||||| ||||| |||| ||||| ||||||||||| |||||||| ||||||
Sbjct 123 CGACCC-GTAAGAATATGGAGAGGATTAAAGGTCCATGGAGTCCAGAAGAAGATGATCTG 181
Query 123 TTACAAACGCTGGTTCA-AAAGCACGGACCAAGGAACTGGTCTCTGATAAGCAAATCAAT 181
|| || | ||| ||||| ||| || || || |||||||||||| |||| |||||||||||
Sbjct 182 TTGCAGAGGCTTGTTCAGAAA-CATGGTCCGAGGAACTGGTCTTTGATTAGCAAATCAAT 240
Query 182 CCCTGGGCGTTCCGGTAAATCTTGTCGTCTCCGGTGGTGTAATCAGCTGTCTCCGGAGGT 241
|||||| |||||||| |||||||||||||||||||||||||| ||||| |||||||||||
Sbjct 241 CCCTGGACGTTCCGGCAAATCTTGTCGTCTCCGGTGGTGTAACCAGCTATCTCCGGAGGT 300
Query 242 AGAGCACCGTGGATTCACGGC-GGAGGAAGACGATACAATTATACTAGCCCACGCTCGGT 300
||||||||||| || | || ||| |||||||| || ||||| | ||| ||||||||||
Sbjct 301 AGAGCACCGTGCTTTTTC-GCAGGAAGAAGACGAGACGATTATTCGAGCTCACGCTCGGT 359
Query 301 TCGGTAACAAGTGGGCTACGAT-TGCACGGCTTCTCAATGGTCGCACCGATAACGCGATT 359
| |||||||||||||||||||| | | || ||||||||||| || ||||||||||| ||
Sbjct 360 TTGGTAACAAGTGGGCTACGATCT-CTCGTCTTCTCAATGGACGAACCGATAACGCTATC 418
Query 360 AAGAATCATTGGAACTCAACGCTGAAGCGGAAATGTAGCGGCGGCGGCGGTGGCGGTGGA 419
||||||||||||||||| |||||||||| |||| | || || || |
Sbjct 419 AAGAATCATTGGAACTCGACGCTGAAGC-GAAA---A-----TGCAGC-GT--C------ 460
Query 420 GAGGAAGGGCAGAGTTGTGATTTCGGTGGTAATGGAGGGTATGATGGTAATTTAACAGAT 479
|||||||| ||||||||||| |||||||||||||||||||||||||||||| |||
Sbjct 461 ---GAAGGGCAAAGTTGTGATTTTGGTGGTAATGGAGGGTATGATGGTAATTTAGGAGAA 517
Query 480 GAA-AAGCCGTTAAAACGGACGGCTAGTGGAGGAGGTGGAG----GA--G--TTGTGT-T 529
|| || ||||| ||||| ||||| ||||| || ||||| | || | |||| | |
Sbjct 518 GAGCAA-CCGTTGAAACGTACGGCGAGTGGTGGTGGTGGTGTCTCGACTGGCTTGTATAT 576
Query 530 GACGGC--GTTAAGTCCAACGGGATCTGACGTCAGCGAGCAATC 571
|| | | | ||||||| |||||||||||||||||||||||||
Sbjct 577 GA-GTCCCGG-AAGTCCATCGGGATCTGACGTCAGCGAGCAATC 618
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53714583150
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5