BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg481204
Length=649
Score E
Sequences producing significant alignments: (Bits) Value
AT2G23340.1 | Symbols: DEAR3 | DREB and EAR motif protein 3 | c... 584 3e-166
> AT2G23340.1 | Symbols: DEAR3 | DREB and EAR motif protein 3 |
chr2:9937998-9938875 FORWARD LENGTH=878
Length=878
Score = 584 bits (316), Expect = 3e-166
Identities = 384/416 (92%), Gaps = 7/416 (2%)
Strand=Plus/Plus
Query 1 CCGGCGGTTATGGAGACGGGAGCGACGGTGACGA-CGACGGTTACGGCGGCGACGATGGG 59
||||||||||||||||||| |||| ||||||| | |||||||||||||||||||||||||
Sbjct 180 CCGGCGGTTATGGAGACGGAAGCGGCGGTGAC-AGCGACGGTTACGGCGGCGACGATGGG 238
Query 60 GATTGGGACGAGGAAGAGAGATCTGAAACCGTACAAAGGAATAAGAATGAGAAAATGGGG 119
||||||||||||||||||||||||||||||||| ||||||||| ||||||| ||||||||
Sbjct 239 GATTGGGACGAGGAAGAGAGATCTGAAACCGTATAAAGGAATACGAATGAGGAAATGGGG 298
Query 120 AAAATGGGTGGCGGAGATTA-GAGAACCGAACAAGAGGTCAAGGATCTGGTTAGGTTCTT 178
||||||||||||||||| | | |||||||| ||||| ||||||||||||||||||||||
Sbjct 299 GAAATGGGTGGCGGAGAT-ACGGGAACCGAATAAGAGATCAAGGATCTGGTTAGGTTCTT 357
Query 179 ATTCTACACCTGAAGCGGCGGCGAGAGCTTACGACACCGCTGTTTTTTACCTCCGTGGTC 238
|| | || ||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 358 ATGCGACGCCTGAAGCGGCGGCGAGAGCTTACGACACTGCTGTTTTTTACCTCCGTGGTC 417
Query 239 CTTCTGCTCGGCTTAATTTCCCGGAGCTTTTGGCTGGACTTACGGTTTCTAACGGCGGAG 298
|||| || |||||||||| ||||||||||||||||||||||| ||||||||||||||||
Sbjct 418 CTTCAGCGAGGCTTAATTTTCCGGAGCTTTTGGCTGGACTTACTGTTTCTAACGGCGGAG 477
Query 299 GAAGAGGTGGTGATTTATCGGCGGCGTATATAAGAAGAAAAGCGGCGGAGGTTGGTGCTC 358
||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||
Sbjct 478 GAAGAGGTGGTGATTTATCGGCGGCGTATATTAGGAGAAAAGCGGCGGAGGTTGGTGCTC 537
Query 359 AGGTTGATGCTCTTGGAGCGACGGTGGCTGTGAATTCCG-C--CGAGAAGAGCGGT 411
|||||||||| |||||||||||||||| ||||||| ||| | |||||| |||||
Sbjct 538 AGGTTGATGCGCTTGGAGCGACGGTGGTTGTGAATACCGGCGGCGAGAATCGCGGT 593
Score = 359 bits (194), Expect = 2e-98
Identities = 234/252 (93%), Gaps = 8/252 (3%)
Strand=Plus/Plus
Query 403 AAGAGCGGTAACGGGTCATTGGAACGGGTCGATTTGAATAAATTACCCGACCCGGAAAAT 462
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 621 AAGAGCGGTAACGGGTCATTGGAACGGGTCGATTTGAATAAATTACCCGACCCGGAAAAT 680
Query 463 TCGGATGATGATGATGACGAGTGTGTGAAGAGGAGATAGaaaaaaaaaaaaaGTAGTTGT 522
||||||| |||||||||||| |||||||| || |||||||||||| ||||| ||||||||
Sbjct 681 TCGGATGGTGATGATGACGAATGTGTGAAAAGAAGATAGAAAAAATAAAAA-GTAGTTGT 739
Query 523 AGAATGA-A-ACGAGAATGTTTGTCTTTACGATGCGCTGTTGTCGCTAACATGCGCTTTT 580
|||| || | ||||||||||||||||||| |||||||||||| ||||||||||||||||
Sbjct 740 AGAAGGAGAGACGAGAATGTTTGTCTTTAAGATGCGCTGTTGCCGCTAACATGCGCTTT- 798
Query 581 CG-TTTTAAGTGTTAAACATGCGCCTCCATTGTTTT-GGGTTTTGTTT-CTTCCTCGATA 637
|| ||||| ||||||||||||||||||||||||||| ||||||||||| | || ||||||
Sbjct 799 CGATTTTA-GTGTTAAACATGCGCCTCCATTGTTTTTGGGTTTTGTTTTCGTCGTCGATA 857
Query 638 ATCAAAGATTTT 649
||||||||||||
Sbjct 858 ATCAAAGATTTT 869
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 31346107728
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5