BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg481207
Length=1275
Score E
Sequences producing significant alignments: (Bits) Value
AT2G23370.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 1832 0.0
> AT2G23370.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT4G34090.1);
Has 73 Blast hits to 73 proteins in 21 species: Archae - 0;
Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 65; Viruses
- 0; Other Eukaryotes - 8 (source: NCBI BLink). | chr2:9952867-9955091
REVERSE LENGTH=1296
Length=1296
Score = 1832 bits (992), Expect = 0.0
Identities = 1186/1278 (93%), Gaps = 20/1278 (2%)
Strand=Plus/Plus
Query 1 TCTCATCGGAAGAGAAACAGTACGGCGATCGGAAAAACTTCCAAGATGAATTGCGGCGCG 60
|||||||||| ||||||||||||||||||||| ||||| || ||||| || ||||||||
Sbjct 31 TCTCATCGGACGAGAAACAGTACGGCGATCGG-AAAAC-TCTGAGATGCATCGCGGCGCG 88
Query 61 GCGGTTTACGGACGGAAACGCGGATTGATACTTCTTCGT-GTAGGCAGAAACTTTTCCAG 119
||||||| |||||||||||| || |||||||||| | | | | |||||||||| ||||
Sbjct 89 GCGGTTTTCGGACGGAAACGTAGACTGATACTTCTCCATGGCA-GCAGAAACTTCGCCAG 147
Query 120 ATCCTTTTGCTCTTCTTCTTCTCCATTATCTGGACATGAATGCTTCATCAAGGATATAGC 179
|||||||||||||||||| | | || |||||| ||||||||| ||||| |||||||||||
Sbjct 148 ATCCTTTTGCTCTTCTTC-T-T-CACTATCTGAACATGAATGTTTCATTAAGGATATAGC 204
Query 180 AAAAGCTCAGCCTCCTAAGCATCTGACGCAGCTGCTGAACATATTCACAGTTAAAGGTAA 239
|||||||||||||||||||||||||| |||||||||||| |||||||||| || ||||||
Sbjct 205 AAAAGCTCAGCCTCCTAAGCATCTGATGCAGCTGCTGAATATATTCACAGCTAGAGGTAA 264
Query 240 ATCCATAGTTTCTCCTGGTGCCAAGAAAGGCTTGTTACCTCTTACTATTCCGTTGGTGCG 299
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 265 ATCCATAGTTTCTCCTGGTGCCAAGCAAGGCTTGTTACCTCTTACTATTCCGTTGGTGAA 324
Query 300 AATGGGCCCGGGTTCTACAATTGCTCTACTACGGTGGCCAACAGCTCCTCCTAGTATGGA 359
|||| ||||||||||| ||||||||||| |||||||||||||||||||| ||||||||||
Sbjct 325 AATGAGCCCGGGTTCTTCAATTGCTCTATTACGGTGGCCAACAGCTCCTTCTAGTATGGA 384
Query 360 GATGCCTGTGGTGGAAGTTCAGAAACATGGGGTTTGGTTTCTAGCCAATAATGTTGATCA 419
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 385 GATGCCTGTGGTGGAAGTTCAGAAACATGGGGTTTGGTTTCTAGCTAATAATGTTGATCA 444
Query 420 GTTCATTCACAGAATATTGGTGGAAGAAGATGTTTCTAAACCCGAAGAATCCAGTCAAGA 479
|||||||||||||||||||||||||||||||||||| ||||||||||||| ||| |||||
Sbjct 445 GTTCATTCACAGAATATTGGTGGAAGAAGATGTTTCCAAACCCGAAGAATGCAGCCAAGA 504
Query 480 AATCCTCAATGCTG-TAGGTGAAGCTGGGGTGAAACTTTACAGTAAGGGTGACTTCGCCA 538
|||| ||||||||| | |||||||||||| |||||||||||||||||||||||| ||||
Sbjct 505 AATCTTCAATGCTGCT-GGTGAAGCTGGGAAGAAACTTTACAGTAAGGGTGACTTTGCCA 563
Query 539 GTTCAAGACTGATGGATTTAGATGCCTATCTTTTAAGAAAGGTTGGACTGTTTCCGGATT 598
||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||
Sbjct 564 GTTCAAGACTGATGGATTTAGATGCCTATCTTTTAAGAAAGGTTGGATTGTTTCCAGATT 623
Query 599 CTCTAGAACGTAAAA-TTATTCGACATATCGAGAATGGAGACCATGTTTCAGCTTTGGTG 657
|||| ||||| |||| ||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 624 CTCTTGAACG-AAAAGTTATTCGGCATATCGAGAATGGAGACCATGTTTCAGCTTTGGTG 682
Query 658 GCTACCGAGTTTTATACAAAGAGAGGGAACTTTCCCGGATTTGCCCGGCCGTTTGCTTTC 717
|||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct 683 GCTACCGAGTTTTATACAAAGAGAGGGAACTTTCCCGGATTTGCCCGGCCATTCGCTTTC 742
Query 718 AATGCAAAGGTTTTGTTGAAACTTGGGCGTAGCTTAGAAGCGAAAGACGCAGCTAGGGGT 777
|| ||||| ||||| ||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 743 AACGCAAAAGTTTTACTGAAACTTGGGCGTAACTTAGAAGCGAAAGACGCAGCTAGGGGT 802
Query 778 GCTTTGAAATCTTCGTGGTGGACCTTAGGATACAGATACGAGGAAATTGCTCGAATAGCA 837
||||||||||||||||||||||||||||||| |||||| ||||||||||||| |||||||
Sbjct 803 GCTTTGAAATCTTCGTGGTGGACCTTAGGATGCAGATATGAGGAAATTGCTCAAATAGCA 862
Query 838 GAGTGGGGAGATGAGCAAATTGCGCAGTATAAGGATAGAGTTACAGGAGAAGGAAAACAA 897
||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 863 GAGTGGGGAGAAGAGCAAATTGCGCAGTATAAGGAGAGAGTTACAGGAGAAGGAAAACAA 922
Query 898 CGGGATATAGACAGGGGAAAGCCAATGGCTCAGGCATCTTTGGACGAGGCTGCGTTCTTA 957
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 923 CGGGATATAGACAGGGGAAAGCCAATGGCTCAGGCATCTTTGGACGAGGCTGCGTTCTTA 982
Query 958 CTGAATCTAGCGTCACTTGAAGGGACATGGGACGAATCACTGGATCGGGTTGCTCAATGC 1017
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||
Sbjct 983 CTGAATCTAGCGTCACTTGAAGGGACATGGGACGAATCACTGGAACGGGTTGCTCAGTGC 1042
Query 1018 TACAAGGAAGCTGGACTTAATGATATCGCCAAGTTTGTTCTATACAGAGATTGAGAAATC 1077
|||||||||||||||||||| || ||||||||||||||||| ||||||||||||||| ||
Sbjct 1043 TACAAGGAAGCTGGACTTAACGACATCGCCAAGTTTGTTCTGTACAGAGATTGAGAAGTC 1102
Query 1078 TCTTTTAAAGGCCACAAAATTAACAGTTTATTCTTTGAAACCTGAGATAACATTATATCA 1137
||||||||||||||||| || ||| || || || ||||||||| |||||||||||
Sbjct 1103 TCTTTTAAAGGCCACAAT-TT----GTTC-TT-TT-GAGACCTGAGATGACATTATATCA 1154
Query 1138 AATGATCTT-TGCATTTGGTGTCTACATTGAAGATTTACATTAACCCTGCTAAAGAGTCA 1196
||||||||| ||||||| |||||||| ||||||||||||||||||||||||||||| |||
Sbjct 1155 AATGATCTTATGCATTTAGTGTCTACGTTGAAGATTTACATTAACCCTGCTAAAGATTCA 1214
Query 1197 TTGGGTCAAGATTACTGATTGTTTCGTTTCTGAGACTAAAAGTGAAATAAAACAGAATGA 1256
|||||||||||||||||||||| || |||||||||||||||||| |||||| ||||||||
Sbjct 1215 TTGGGTCAAGATTACTGATTGTATCCTTTCTGAGACTAAAAGTGGAATAAAGCAGAATGA 1274
Query 1257 TCATCTTATTGGGTAATA 1274
||||||||| | ||||||
Sbjct 1275 TCATCTTATAGAGTAATA 1292
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 62700480705
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5