BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg481208
Length=2898
Score E
Sequences producing significant alignments: (Bits) Value
AT2G23380.1 | Symbols: CLF, ICU1, SDG1, SET1 | SET domain-conta... 4630 0.0
> AT2G23380.1 | Symbols: CLF, ICU1, SDG1, SET1 | SET domain-containing
protein | chr2:9955553-9960359 FORWARD LENGTH=2968
Length=2968
Score = 4630 bits (2507), Expect = 0.0
Identities = 2782/2912 (96%), Gaps = 30/2912 (1%)
Strand=Plus/Plus
Query 1 ATGGCGTCAGAAGCTTCGCCTTCTTCTTCCGCGACCAGATCGGAGCCACCCAAAGACTCT 60
||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||
Sbjct 18 ATGGCGTCAGAAGCTTCGCCTTCTTCTTCGGCCACCAGATCGGAGCCACCCAAAGACTCT 77
Query 61 ACTACGGAGGAGGAGAGAGGTCCAGCTGCTAAGGAAGTATCAGAAGTAATAGAATCGCTA 120
| ||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 78 -C--CGGCGGAGGAGAGAGGTCCAGCTTCTAAGGAAGTATCAGAAGTAATAGAATCGCTA 134
Query 121 AAGAAGAAACTTGCAGCTGATAGGTGTATATCAATAAAGAAAAGGATTGATGAAAACAAT 180
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 135 AAGAAGAAGCTTGCAGCTGATAGGTGTATATCAATAAAGAAAAGGATTGATGAAAACAAG 194
Query 181 AAGAATTTGTGTGGTATTACTCAAAGCTTTATGAGGTCGTCCATGGAAAGAGGAAGTAGT 240
|||||||||| || |||||||||||| ||||||||||| || |||||| ||||| ||||
Sbjct 195 AAGAATTTGTTTGCTATTACTCAAAGTTTTATGAGGTCTTCTATGGAACGAGGAGGTAGC 254
Query 241 TGTAAAGATGGTAGTAATCTTTTAGTTAAGAGGCAAAGAGATTCGCCCGGGATGAAAAGC 300
||||||||||| ||| ||||||||||||||||||||||||||||||| || |||||||||
Sbjct 255 TGTAAAGATGGCAGTGATCTTTTAGTTAAGAGGCAAAGAGATTCGCCAGGTATGAAAAGC 314
Query 301 GGAATCGATGAAAGTAGTAATAACCACAGAT-TCGTTGAAGATGGACCTGCCAATTCTGG 359
|||||||||| || ||||||||| |||||| | || |||||||||||||||| ||| ||
Sbjct 315 GGAATCGATG-AA--AGTAATAACAACAGATAT-GTAGAAGATGGACCTGCCAGTTCAGG 370
Query 360 AATGGTTCAAGGATCTAGTGTCCCTGTTAAGATTTCCTTACGTCCTATCAAAATGCCTGA 419
||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||
Sbjct 371 AATGGTTCAAGGATCTAGTGTCCCTGTCAAAATTTCCTTACGTCCTATCAAAATGCCTGA 430
Query 420 TATCAAACGTTTGTCACCTTATACCACATGGGTTTTTCTGGACAGAAATCAAAGAATGAC 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 431 TATCAAACGTTTGTCACCTTATACCACATGGGTTTTTCTGGACAGAAATCAAAGAATGAC 490
Query 480 TGAAGACCAGTCTGTAGTGGGTCGAAGGAGAATTTATTATGATCAAACTGGCGGGGAAGC 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 491 TGAAGACCAGTCTGTAGTGGGTCGAAGGAGAATTTATTATGATCAAACTGGCGGGGAAGC 550
Query 540 GCTCATCTGCAGTGATAGTGAAGAGGAGGCGATTGACGACGAAGAAGAAAAAAGAGATTT 599
||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 551 GCTTATCTGCAGTGATAGTGAAGAGGAGGCCATTGACGACGAAGAAGAAAAAAGAGATTT 610
Query 600 TTTGGAGCCTGAAGATTATATTATTCGCATGACCCTTGAGCAACTAGGTCTTTCAGACTC 659
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 611 TTTGGAGCCTGAAGATTATATTATTCGCATGACCCTTGAGCAACTAGGTCTTTCAGACTC 670
Query 660 GGTCGTGGAGGAACTAGCAAATTTCTTGTCTAGAAGTACTAGTGAAATCAAGGCAAGACA 719
||| ||| ||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 671 AGTCCTGGCGGAACTAGCAAGTTTCTTGTCTAGAAGTACTAGTGAAATCAAGGCAAGACA 730
Query 720 TGGAGTGCTTATGAAAGAAAAAGAAGTATCCGAGAGTGGGGATAATCAAGCAGAGAGCTC 779
||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 731 TGGAGTGCTTATGAAGGAAAAAGAAGTATCCGAGAGTGGCGATAATCAAGCAGAGAGCTC 790
Query 780 CCTTCTCAACAAAGATATGGAAGGAGCATTAGATTCTTTCGATAACCTGTTTTGCCGTAG 839
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 791 CCTTCTCAACAAAGATATGGAAGGAGCATTAGATTCTTTCGATAACCTGTTCTGCCGTAG 850
Query 840 ATGCCTTGTATTTGATTGCCGGCTGCACGGGTGTTCACAGGATCTTATTTTTCCTGCTGA 899
|||||||||||||||||||||||| || ||||||||||||||||| |||||||| |||||
Sbjct 851 ATGCCTTGTATTTGATTGCCGGCTTCATGGGTGTTCACAGGATCTCATTTTTCCGGCTGA 910
Query 900 GAAACCAGCTCCATGGTGTCCTCCTGTAGATGAAAATATAACCTGTGGTGCAAACTGCTA 959
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 911 GAAACCAGCTCCATGGTGTCCTCCTGTAGATGAAAATTTAACCTGTGGTGCAAACTGCTA 970
Query 960 TAAAACGCTTCTCAAGTCTGAAAGAATTCCGGGATATGGCACCATTGAAGATAAAACTGG 1019
|||||||||||||||||||| |||| |||||||||||||||||||||||| |||||||||
Sbjct 971 TAAAACGCTTCTCAAGTCTGGAAGATTTCCGGGATATGGCACCATTGAAGGTAAAACTGG 1030
Query 1020 CACTTCATCAGATGGTGCAGGTACT--AA--A-A-CCAC--A----TCCAACAAACTTAA 1067
||||||||||||||||||||||||| || | | |||| | |||| |||||||||
Sbjct 1031 CACTTCATCAGATGGTGCAGGTACTAAAACCACACCCACGAAGTTCTCCAGCAAACTTAA 1090
Query 1068 TGGAAGAAAACCCAAGACCTTCCCAGGTGAAAGTGCATCGTCTAATGAAAAGTGCACACC 1127
||| |||||||| |||||||||||| ||||||||||||||||||||||||||||| |||
Sbjct 1091 TGGGAGAAAACCAAAGACCTTCCCAAGTGAAAGTGCATCGTCTAATGAAAAGTGCGCACT 1150
Query 1128 AGAAACAAGTGACTCAGAGAACGGACTACAGCAGGATACCAATTCCGATAAAGTTTCATC 1187
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1151 AGAAACAAGTGACTCAGAGAATGGACTACAGCAGGATACCAATTCCGATAAAGTTTCATC 1210
Query 1188 ATTGCCAAAGGTGAAAGGTAGTGGGAGACGTGGAGGTCGTAAGAGGAACAACAACCGAGT 1247
|| ||||||||||||||||||||||||||| | |||||||||||||||||| ||||||||
Sbjct 1211 ATCGCCAAAGGTGAAAGGTAGTGGGAGACGAGTAGGTCGTAAGAGGAACAAAAACCGAGT 1270
Query 1248 CGCTGAGCGAGTTCCTCGTAAGACTCAGAAGAGGCAGAAGAAGACAGAAGCCTCAGATAG 1307
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1271 TGCTGAGCGAGTTCCTCGTAAGACTCAGAAGAGGCAGAAGAAGACAGAAGCCTCGGATAG 1330
Query 1308 TGATTCCATCGCCAGTGGAAGTTGTTCACCCAGCAATGCAAAACATAAAGATAATGAAGA 1367
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1331 TGATTCCATCGCCAGTGGAAGTTGTTCACCCAGCGATGCAAAACATAAAGATAATGAAGA 1390
Query 1368 TGCTACTTCCTCTTCTCAGAAGCATGTAAAATCTGGGAACTCCGGGAAGTCAAGGAAGAA 1427
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1391 TGCTACTTCCTCTTCTCAGAAGCATGTAAAATCTGGGAACTCCGGGAAGTCAAGGAAGAA 1450
Query 1428 TGGCACTCCTGCAGAAGACTCCAAGAATCCTGTGAAGGATGACGATCCTGTTTGCCAGTC 1487
|||||||||||| |||| |||||| ||| ||||||||||||||| |||||||||||||||
Sbjct 1451 TGGCACTCCTGCCGAAGTCTCCAATAATTCTGTGAAGGATGACGTTCCTGTTTGCCAGTC 1510
Query 1488 AGATAAGATTGCGTCTGAGCTTGATGCACCGTGTAGTGATGAAAGTCTAAGGAAAGAAGA 1547
| || || ||||||| ||||||||||| ||| ||||||||||||||||||||||||||||
Sbjct 1511 AAATGAGGTTGCGTCAGAGCTTGATGCGCCGGGTAGTGATGAAAGTCTAAGGAAAGAAGA 1570
Query 1548 GTTTGTGGGTGAAAATGTATGTCGAGCAAGATTGGCTACAAATAAATTGTGGAGACCACT 1607
|||| ||||||||| ||||| ||||| |||||||||||||||||| ||||||||||||||
Sbjct 1571 GTTTATGGGTGAAACTGTATCTCGAGGAAGATTGGCTACAAATAAGTTGTGGAGACCACT 1630
Query 1608 TGAGAAAAGCCTTTTTGATAAAGGTGTTGAGATTTTTGGAATGAATAGCTGCTTGATTGC 1667
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1631 TGAGAAAAGCCTTTTTGATAAAGGTGTTGAGATTTTTGGAATGAATAGCTGCTTGATTGC 1690
Query 1668 TAGAAACCTTTTGAGTGGTTTCAAGTCATGTTGGGAGGTCTTCCAATACATGACTTGCTC 1727
|||||| ||||||||||||||||| ||||||||||||||||||||||||||||| |||||
Sbjct 1691 TAGAAATCTTTTGAGTGGTTTCAAATCATGTTGGGAGGTCTTCCAATACATGACGTGCTC 1750
Query 1728 GGAAAATAAAGCTTCCTTCTTTGGAGGTGATGCATTGAATCCTGATGGCTTTTCCAAGTT 1787
|||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||
Sbjct 1751 GGAAAATAAAGCTTCCTTCTTTGGAGGTGATGGATTGAATCCTGATGGCTCTTCCAAGTT 1810
Query 1788 CGATATCAATGGAAATATGGTTAATAACCAAGTGAGGAGAAGGTCAAGATTTCTACGTAG 1847
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1811 CGATATCAATGGAAATATGGTTAATAACCAAGTGAGGAGAAGGTCAAGATTTCTACGTAG 1870
Query 1848 GAGAGGCAAAGTGCGTCGCTTGAAGTATACTTGGAAGTCTGCTGCATATCATTCAATTAG 1907
||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1871 GAGAGGCAAAGTGCGGCGCTTGAAGTATACCTGGAAGTCTGCTGCATATCATTCAATTAG 1930
Query 1908 GAAAAGAATTACTGAGAGGAAAGACCAGCCCTGCCGTCAGTTTAATCCATGCAACTGCAA 1967
||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1931 GAAAAGAATTACTGAGAAGAAAGACCAGCCCTGCCGTCAGTTTAATCCATGTAACTGCAA 1990
Query 1968 AATTGCTTGTGGGAAGGAATGTCCTTGTTTGCTAAACGGGACTTGCTGCGAGAAGTACTG 2027
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1991 AATTGCTTGTGGGAAGGAATGTCCTTGTTTGCTAAACGGGACTTGCTGCGAGAAGTACTG 2050
Query 2028 CGGTTGCCCAAAGAGCTGCAAGAATAGGTTTAGAGGTTGTCATTGTGCCAAAAGTCAGTG 2087
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2051 CGGTTGCCCAAAGAGCTGCAAGAATAGGTTTAGAGGTTGTCATTGTGCCAAAAGTCAGTG 2110
Query 2088 TCGAAGCCGTCAATGTCCATGCTTTGCGGCAGATCGGGAATGTGACCCAGATGTTTGTAG 2147
||||||||| || |||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 2111 TCGAAGCCGCCAGTGTCCATGCTTTGCTGCAGATCGGGAATGTGACCCAGATGTTTGTAG 2170
Query 2148 GAACTGCTGGGTCATTGGTGGGGATGGTTCGCTTGGGGTTCCAAGCCAAAGAGGCGATAA 2207
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 2171 AAACTGCTGGGTCATTGGTGGGGATGGTTCGCTTGGGGTCCCAAGCCAAAGAGGCGATAA 2230
Query 2208 TTATGAGTGCAGGAATATGAAATTGCTCCTGAAACAACAACAAAGGGTTTTACTTGGAAT 2267
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2231 TTATGAGTGCAGGAATATGAAATTGCTCCTGAAACAACAACAAAGGGTTTTACTTGGAAT 2290
Query 2268 ATCTGATGTTTCTGGTTGGGGAGCTTTCTTAAAGAACAGTGTAAGTAAGCATGAATACCT 2327
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2291 ATCTGATGTTTCTGGTTGGGGAGCTTTCTTAAAGAACAGTGTAAGTAAGCATGAATACCT 2350
Query 2328 TGGGGAATACACAGGAGAGCTGATCTCACATAAAGAAGCAGATAAACGCGGGAAGATATA 2387
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 2351 TGGGGAATACACAGGAGAGCTGATCTCACATAAAGAGGCAGATAAACGCGGGAAGATATA 2410
Query 2388 TGATCGCGAGAACTCCTCTTTTCTCTTCAATCTAAACGATCAGTTTGTGCTAGATGCTTA 2447
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2411 CGATCGCGAGAACTGCTCTTTTCTCTTCAATCTAAACGATCAGTTTGTGCTAGATGCTTA 2470
Query 2448 CAGGAAAGGAGACAAACTTAAATTCGCCAACCATTCTCCTGAACCTAACTGTTACGCAAA 2507
|||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 2471 CAGGAAAGGAGATAAACTGAAATTCGCCAACCATTCTCCTGAACCTAACTGTTACGCAAA 2530
Query 2508 GGTCATTATGGTTGCTGGAGATCACAGGGTGGGGATCTTCGCAAAAGAGAGGATACTGGC 2567
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2531 GGTCATCATGGTTGCTGGAGATCACAGGGTGGGGATCTTCGCAAAAGAGAGGATACTGGC 2590
Query 2568 TGGAGAAGAACTATTTTACGATTACCGGTATGAGCCAGATCGAGCTCCAGCTTGGGCCAA 2627
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2591 TGGAGAAGAACTATTTTACGATTACCGGTATGAGCCAGATCGAGCTCCAGCTTGGGCCAA 2650
Query 2628 AAAACCTGAAGCTCCGGGTTCGAAGAAAGACGAAAATGTTACACCTTCTGTTGGCAGACC 2687
||||||||||||||| ||||| |||||||||||||||||||||||||||||||| |||||
Sbjct 2651 AAAACCTGAAGCTCCTGGTTCTAAGAAAGACGAAAATGTTACACCTTCTGTTGGTAGACC 2710
Query 2688 CAAGAAGCTTGCCTAGCAACAAAAGAAACAACCAttttttttGTCGATTCTTTGATTACA 2747
|||||||||||| |||||||||||||||||||||||||||| ||| |||||||| |||||
Sbjct 2711 CAAGAAGCTTGCTTAGCAACAAAAGAAACAACCATTTTTTT-GTCAATTCTTTGGTTACA 2769
Query 2748 GGTGGAAGAACGCTAACGCATTAATCCTCATTATTCTCCACACGGAAGA-CACATTGAAA 2806
|||||||||||||| ||||||||||||| ||||||||||||||| ||||||||||
Sbjct 2770 GGTGGAAGAACGCT------TTAATCCTCATTACTCTCCACACGGAAGAACACATTGAAA 2823
Query 2807 CAAATTTATACATTTTGCTGAGTCTAAAGAAAAGTTGTATTCGTTGGATTAAAAATTTTC 2866
|||||| |||||||||||||||||||||||||| |||||||||||||||||||| ||| |
Sbjct 2824 CAAATTCATACATTTTGCTGAGTCTAAAGAAAAATTGTATTCGTTGGATTAAAA-TTT-C 2881
Query 2867 CTTTTTTCGTTTTACATTTCTGGATTATCATT 2898
||||||||||||||||||||||||||||||||
Sbjct 2882 CTTTTTTCGTTTTACATTTCTGGATTATCATT 2913
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 144029293353
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5