BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg481209
Length=1573
Score E
Sequences producing significant alignments: (Bits) Value
AT2G23390.1 | Symbols: | CONTAINS InterPro DOMAIN/s: Protein o... 2276 0.0
> AT2G23390.1 | Symbols: | CONTAINS InterPro DOMAIN/s: Protein
of unknown function DUF482 (InterPro:IPR007434), Acyl-CoA N-acyltransferase
(InterPro:IPR016181); Has 2165 Blast hits to
2163 proteins in 543 species: Archae - 0; Bacteria - 1044;
Metazoa - 0; Fungi - 0; Plants - 33; Viruses - 0; Other Eukaryotes
- 1088 (source: NCBI BLink). | chr2:9960372-9963623
REVERSE LENGTH=1753
Length=1753
Score = 2276 bits (1232), Expect = 0.0
Identities = 1495/1615 (93%), Gaps = 45/1615 (3%)
Strand=Plus/Plus
Query 1 AAATCATCAGCGACCACTGTGATTCCACTTGATCGCCGGAGTCGCCGTCGTCGCCG-C-C 58
|||||||||||||||||||||| ||||||||| |||||||| ||||| |||||||| | |
Sbjct 29 AAATCATCAGCGACCACTGTGACTCCACTTGAGCGCCGGAGCCGCCGCCGTCGCCGTCGC 88
Query 59 G-C-G-------------CGTTCCTCTTCAAACACACCGACGCGTAACCAGTTTCGTCCA 103
| | | ||||||||||||||||||||||||||||||||||||||||||
Sbjct 89 GTCGGAACTCCATTTTCACGTTCCTCTTCAAACACACCGACGCGTAACCAGTTTCGTCCA 148
Query 104 TGGCCGTTGTACTTTCCTACTGCAAACCTTCGCCTCCTCTCCGTCGATTCCATCGTCGCT 163
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 149 TGGCCGTTGTACTTTCCTACTGCAAACCTTCGCCTCCTCTTCGTCGATTCCATCGTCGCT 208
Query 164 GCGGAAATTTGTGGAAGAAAGGAAATGTTAGGAGTTCAAGACGATCATCTACGGTTACTG 223
||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||
Sbjct 209 GCGGAAATTTGTGGAAGAAAGAAAATGTTAGGAGTTCAAGACGATCATCTTCGGTTACTG 268
Query 224 CTATGTTTTGGAAGACCAATAAACCTGCGGAAGTACGGGAATTCGATATATCACTTAGGG 283
|||||||||||||| ||||||| |||||||||||| ||||||||||||||||||||| |
Sbjct 269 CTATGTTTTGGAAGTCCAATAAGCCTGCGGAAGTAAAGGAATTCGATATATCACTTAGAG 328
Query 284 ATTACACTCTAACTGGAT----C----A-G-A-CTTT-G------AGCCGAGGCGAAATG 325
||||||||||||||| || | | | | |||| | |||||| || ||| |
Sbjct 329 ATTACACTCTAACTGAATCAAACATTGAGGAAGCTTTGGAAAACAAGCCGAAGCAAAAGG 388
Query 326 TGATTTCACTATCAGCTGTTTCTTCAATATTAGAGATACCACCAGCTGAATGGGATGCAT 385
||||||||||||||| ||||||||||||||| |||||||||| |||||||||||||||||
Sbjct 389 TGATTTCACTATCAGTTGTTTCTTCAATATTTGAGATACCACAAGCTGAATGGGATGCAT 448
Query 386 GTGCTTTGGATTCTTCTCAACCTGAAAGTTATAATCCATTTCTAAGTCATGGTTTTCTTT 445
|||| ||||||||||||||||||||||| |||||||||||||||||| |||| |||||||
Sbjct 449 GTGCGTTGGATTCTTCTCAACCTGAAAGCTATAATCCATTTCTAAGTTATGGATTTCTTT 508
Query 446 CCAGTTTAGAAGAGACGGGATGTGCCGTCCGGGAAACAGGTTGGATGCCATTGCATATTG 505
||||||||||||| || || |||||||| ||||||||||||||||||||||| || ||||
Sbjct 509 CCAGTTTAGAAGATACTGGTTGTGCCGTTCGGGAAACAGGTTGGATGCCATTACACATTG 568
Query 506 TTGCAAAGGATGAATCTGAGAGTATTTTGGGCGTCGTCCCACTTTATCTCAAAAGCCATT 565
||||||||||||||| ||||||||||||||| || || ||||||||||||||||||||||
Sbjct 569 TTGCAAAGGATGAATGTGAGAGTATTTTGGGTGTTGTTCCACTTTATCTCAAAAGCCATT 628
Query 566 CCTATGGCGAATTTGTTTTTGATCACTCTTGGGCTGATGCATACCGCAGTTTCGGTGGAA 625
| ||||||||||||||||||||||| |||||||||||||||||||| ||||| || ||||
Sbjct 629 CTTATGGCGAATTTGTTTTTGATCATTCTTGGGCTGATGCATACCGAAGTTTTGGCGGAA 688
Query 626 GATATTATCCTAAACTTCAGTGTTGTGTTCCTTTCACCCCAGTTACCGGCCCTAGGA-TC 684
|||||||||||||||||||||||||||||||||||||||||||||| || ||||||| ||
Sbjct 689 GATATTATCCTAAACTTCAGTGTTGTGTTCCTTTCACCCCAGTTACTGGTCCTAGGATTC 748
Query 685 TTAATCCGTAATAATCCTTGCAAAGAGCAAGTTTTTGATGCTATTGTTTCTGCCATGACA 744
|| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 749 TT-ATCCGTGATAATCCTTGCAAAGAGCAAGTTTTTGATGCTATTGTTTCTGCCATGACG 807
Query 745 GAACTGGCAGCTAAGTTACGAGTTTCATCTTTGCACATTACATTTCCTTCTGGAGTTGAG 804
||| ||||| | ||||||| ||||||||||||||||||||||||||| ||||||| ||||
Sbjct 808 GAATTGGCATCAAAGTTACAAGTTTCATCTTTGCACATTACATTTCCGTCTGGAGCTGAG 867
Query 805 TGGAACAAATTGAAGGAGAAAGGCTTCTCACAGAGGATTGGAATGCAGTATCACTGGCAA 864
||| |||||||||| ||||||||||||||||| ||||||||||||||||| |||||| ||
Sbjct 868 TGGGACAAATTGAAAGAGAAAGGCTTCTCACAAAGGATTGGAATGCAGTACCACTGGAAA 927
Query 865 AATCGTGACTATAAAAATTTTGATGAGTTCTTGATGGACATGAAGCAAAGCAAAAGGAAA 924
|||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 928 AATCGTGATTATAAAAATTTTGACGAGTTCTTGATGGACATGAAGCAAAGCAAAAGGAAA 987
Query 925 AATATCCGGCAGGAACGTAAAAAGATTGGTACCCAGAATTTGAAAATGAGACGGCTACAA 984
|||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 988 AATATCCGACAGGAACGCAAAAAGATTGGTACCCAGAATTTGAAAATGAGACGGCTACAA 1047
Query 985 GGAGATGAAATAAAGGCTAGGCATTGGGATTCCTTCTATGACTTCTACAGGAACACAACT 1044
|||||||| |||||||||||||| ||||||||||||||||| ||||||||||||||||||
Sbjct 1048 GGAGATGATATAAAGGCTAGGCACTGGGATTCCTTCTATGATTTCTACAGGAACACAACT 1107
Query 1045 GATAACAAATGGGGCACACCTTATCTCACAAGGGATTTCTTTCACGACATGGCATCGAAG 1104
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1108 GATAACAAATGGGGCACACCTTATCTCACAAGGGATTTCTTTCACGACATGGCATCGAAG 1167
Query 1105 TTAGGAGACAAGGTATTGCTTGTTCTT-GCTGAAGAAAACGAGGAACCTGTTGCAGGAGC 1163
|| ||||||||||||||||||||| || ||||||||||||||||||||||||||||||||
Sbjct 1168 TTGGGAGACAAGGTATTGCTTGTT-TTAGCTGAAGAAAACGAGGAACCTGTTGCAGGAGC 1226
Query 1164 ATTGAATCTTATTGGAGGAGATACTCTATTTGGGAGACTATGGGGATGTCGTCCTGATTC 1223
||||||||| |||||||||||||||||||||||||||||||||||||||||||| || ||
Sbjct 1227 ATTGAATCTCATTGGAGGAGATACTCTATTTGGGAGACTATGGGGATGTCGTCCCGACTC 1286
Query 1224 CTATTATCCTAGTCTCCATTTTGAAGCGTGCTATTACCAGGCAATTGAAGCAGCAATAGA 1283
||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||
Sbjct 1287 CTATTATCCTAGTCTCCATTTTGAAGCATGCTATTACCAGGCAATTGAAGCAGCGATAGA 1346
Query 1284 GCTTAATCTGAAAACGGTGGAAGCTGGAGCTCAGGGTGAGCATAAGATTCAGCGAGGCTA 1343
|||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||
Sbjct 1347 GCTTAATCTGAAAACGGTAGAAGCTGGAGCGCAGGGTGAGCATAAGATTCAGCGAGGCTA 1406
Query 1344 CCTTCCTGTTAAAACATATAGTTGCCATTACATATTCGATGAAGGTTTCAGGCAAGCCAT 1403
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1407 CCTTCCCGTTAAAACATATAGTTGCCATTACATATTCGATGAAGGTTTCAGGCAAGCCAT 1466
Query 1404 AGACGAGTTTTTAGTGCGCGAATCAAATCAGGTGGATTTTGTCATCAAACTGTTGCATGA 1463
||||||||||||||||||||||||||||||| |||||| |||||||| |||| |||||||
Sbjct 1467 AGACGAGTTTTTAGTGCGCGAATCAAATCAGATGGATTATGTCATCAGACTGATGCATGA 1526
Query 1464 AGATGGACCCTTCAAAGAGAACATAGAATAGATGCATTTTATATCTTGGTTACCGCAAAC 1523
||||||||||||||||||||| ||||||||||||||||| |||||||||||| |||||||
Sbjct 1527 AGATGGACCCTTCAAAGAGAAAATAGAATAGATGCATTT-ATATCTTGGTTATCGCAAAC 1585
Query 1524 ATTCTTGTATA----A-TTCTTAGGTTTATGCGTCAATGTACATTTTAATTTGGC 1573
||||||||||| | ||||||||||||||||||||||||||||||||||||||
Sbjct 1586 ATTCTTGTATATCTTAATTCTTAGGTTTATGCGTCAATGTACATTTTAATTTGGC 1640
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 77660243115
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5