BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg481210
Length=807
Score E
Sequences producing significant alignments: (Bits) Value
AT2G23410.1 | Symbols: ACPT, CPT | cis-prenyltransferase | chr2... 985 0.0
AT5G58780.1 | Symbols: | Undecaprenyl pyrophosphate synthetase... 889 0.0
AT2G23400.1 | Symbols: | Undecaprenyl pyrophosphate synthetase... 627 6e-179
> AT2G23410.1 | Symbols: ACPT, CPT | cis-prenyltransferase | chr2:9966130-9967772
REVERSE LENGTH=1060
Length=1060
Score = 985 bits (533), Expect = 0.0
Identities = 685/758 (90%), Gaps = 11/758 (1%)
Strand=Plus/Plus
Query 57 TGATGAGGGAACTTGTGTTGTCCGAGAGGA-GGAGCTACAAAGAGAGCTGATGCCGAGGC 115
|||||||||||||| ||||||||| ||||| || | |||||||||| || |||||||| |
Sbjct 190 TGATGAGGGAACTTATGTTGTCCGCGAGGATGG-GTTACAAAGAGAACTAATGCCGAGAC 248
Query 116 ACGTGGCATTCATACTGGATGGGAACCGTAGATGGGCCAAACGAGACGGATTG-CTGACG 174
|||||||||||||||||||||||||||| |||||||||||||| | ||||||| | ||||
Sbjct 249 ACGTGGCATTCATACTGGATGGGAACCGGAGATGGGCCAAACGGGCCGGATTGAC-GACG 307
Query 175 TCACAAGGCCACGAGGCCGGAGCTAAACGGTTTATAGAGATCGCCGAGCTCTGCTTCGAA 234
||||||||||||||||| |||||||||||| ||||||| ||||||||||||||||||||
Sbjct 308 TCACAAGGCCACGAGGCGGGAGCTAAACGGCTTATAGATATCGCCGAGCTCTGCTTCGAG 367
Query 235 CTCGGGATTCATACAGTCTCAGCTTTTGCTTTCTCCACAGGGAATTGGGGAAGAGACAAG 294
| ||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 368 TTGGGGGTTCATACAGTCTCAGCTTTTGCTTTCTCCACAGAGAATTGGGGAAGAGACAA- 426
Query 295 GA-TGAGGTCAAGTGGCTT-ATGTCTTTGTTCCAACACCAACTC---AAGTCCAACAGCC 349
|| |||| | | | ||| ||||||||| |||||||| | | | |||||||||| |
Sbjct 427 GATTGAGATTGA-TAACTTGATGTCTTTGATCCAACACTACCGCAATAAGTCCAACATCA 485
Query 350 AATACTTTCACAGAAAGGAAATTCGCGTTTCTGTTATCGGGAATCAAACGAAGATCGATG 409
||| ||| |||||| |||| ||||||||||||||||||||||| ||||||||||| ||
Sbjct 486 AATTCTTCCACAGATCGGAAGTTCGCGTTTCTGTTATCGGGAATAAAACGAAGATCCCTG 545
Query 410 AATCTATCCTCCAAGAAATCCATGAGATAGAGGAAGCTACGAAAGGCTACAAGAATAAGC 469
||||| ||||| |||||||||||||||||||||||||||| ||||||||||||||||| |
Sbjct 546 AATCTCTCCTCAAAGAAATCCATGAGATAGAGGAAGCTACCAAAGGCTACAAGAATAAAC 605
Query 470 ATCTCATCGTGGCAATAGATTATAGCGGGAGATTCGATATCATGCACGCTTGCAAGAGTC 529
|||||||| ||||| ||||||| ||||||| ||| ||||||||||| |||||||||||||
Sbjct 606 ATCTCATCATGGCAGTAGATTACAGCGGGAAATTTGATATCATGCATGCTTGCAAGAGTC 665
Query 530 TTGTGAAGAAATCAGAGAGAGGGTTGATCCGAGAGCAAGACGTTGACGAGGCATTGATCG 589
|||||||||||||||| | |||||||||||||||| |||| || ||||||||||||||||
Sbjct 666 TTGTGAAGAAATCAGAAAAAGGGTTGATCCGAGAGGAAGATGTAGACGAGGCATTGATCG 725
Query 590 AGAGAGAGCTTCTGACGAATTGTAGTGACTTCCCAAGTCCTGATTTAATGATTAGGACAA 649
||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 726 AGAGAGAGCTTTTGACAAATTGTAGTGACTTCCCAAGTCCTGATTTAATGATTAGGACAA 785
Query 650 GTGGAGAACAGAGGATTAGTGACTTCTTCTTGTGGCAACTTGCTTATACCGAGGTCTTCT 709
|||||||||||||||||||| |||||||||||||||||||||||||| ||||| | ||||
Sbjct 786 GTGGAGAACAGAGGATTAGTAACTTCTTCTTGTGGCAACTTGCTTATTCCGAGCTTTTCT 845
Query 710 TCTCGCCGGTCCTTTGGCCTGATTTCGATAAGGATAAGCTTCTAGAGGCTCTCGCTTCGT 769
|||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 846 TCTCGCCGGTATTTTGGCCTGATTTCGATAAGGATAAGCTTCTAGAGGCTCTTGCTTCGT 905
Query 770 ATCAGCGCAGGGAAAGACGATTTGGTTGTCGGATTTGA 807
||||||| |||||||||||||||||||||||| |||||
Sbjct 906 ATCAGCGTAGGGAAAGACGATTTGGTTGTCGGGTTTGA 943
> AT5G58780.1 | Symbols: | Undecaprenyl pyrophosphate synthetase
family protein | chr5:23735629-23737335 REVERSE LENGTH=1086
Length=1086
Score = 889 bits (481), Expect = 0.0
Identities = 668/758 (88%), Gaps = 14/758 (2%)
Strand=Plus/Plus
Query 57 TGATGAGGGAACTTGTGTTGTCCGAGAGGAGGAGCTACAAAGAGAGCTGATGCCGAGGCA 116
||| |||||||||| ||| || ||| ||||||||||||||||||||||||||| || ||
Sbjct 210 TGACGAGGGAACTTATGTGGTAGGAGTGGAGGAGCTACAAAGAGAGCTGATGCCAAGACA 269
Query 117 CGTGGCATTCATACTGGATGGGAACCGTAGATGGGCCAAACGAGACGGATTGCTGACGTC 176
|||||| | ||| |||| || ||||| |||||||||||||| | |||||||||||||||
Sbjct 270 TGTGGCAGTGATAATGGACGGAAACCGGAGATGGGCCAAACGGGCCGGATTGCTGACGTC 329
Query 177 ACAAGGCCACGAGGCCGGAGCTAAACGGTTTATAGAGATCGCCGAGCTCTGCTTCGAACT 236
|||||||||||||||||||||||||||| |||||||| || ||||||| ||||| || |
Sbjct 330 ACAAGGCCACGAGGCCGGAGCTAAACGGCTTATAGAGTTCTCCGAGCTTTGCTTTAAATT 389
Query 237 CGGGATTCATACAGTCTCAGCTTTTGCTTTCTCCACAGGGAATTGGGGAAGAGACAAGGA 296
|||||||||||||| ||||||||||| |||||||||| ||||||||||||| |||| ||
Sbjct 390 GGGGATTCATACAGTTTCAGCTTTTGCCTTCTCCACAGAGAATTGGGGAAGACACAA-GA 448
Query 297 -TGAGGTCAAGTGGCTT-ATGTCTTTGTTCCAACACCAACTCAAGTCCAACAGCCAATAC 354
|||||| |||| |||| ||||||||| ||||||| | ||||||||||| | ||||||
Sbjct 449 TTGAGGTTAAGT-GCTTGATGTCTTTGATCCAACATTACCTCAAGTCCAAGATCCAATA- 506
Query 355 TTT-CACAGAAAGGAAATTCGCGTTTCTGTTATCGGGAATCAAACGAAGATCGATGAATC 413
||| || ||| |||||| ||| ||||||||||||||||| | |||||||||| ||| ||
Sbjct 507 TTTCCAAAGAGAGGAAACTCGAGTTTCTGTTATCGGGAACCTAACGAAGATCCCTGAGTC 566
Query 414 TATCCTCCAAGAA-A-TCCATGAGATAGAGGAAGCTACGA-AAGGCTACAAGAATAAGCA 470
| |||||| ||| | |||| ||||||||||||||||||| || |||| ||||| |||||
Sbjct 567 TCTCCTCC--GAACAGTCCAAGAGATAGAGGAAGCTACGAGAA-GCTATAAGAAGAAGCA 623
Query 471 TCTCATCGTGGCAATAGATTATAGCGGGAGATTCGATATCATGC-ACGCTTGCAAGAGTC 529
|||||| ||||||||||||| ||||||||||| || ||| ||| | ||||||||||||
Sbjct 624 TCTCATATTGGCAATAGATTACAGCGGGAGATTAGACATCTTGCGA-GCTTGCAAGAGTA 682
Query 530 TTGTGAAGAAATCAGAGAGAGGGTTGATCCGAGAGCAAGACGTTGACGAGGCATTGATCG 589
|||||||||||||||| | |||||||||||||||| |||| || ||||||||||||||||
Sbjct 683 TTGTGAAGAAATCAGAAAAAGGGTTGATCCGAGAGGAAGATGTAGACGAGGCATTGATCG 742
Query 590 AGAGAGAGCTTCTGACGAATTGTAGTGACTTCCCAAGTCCTGATTTAATGATTAGGACAA 649
| |||||||||||||| ||||||| ||| ||||||||||||||| || ||||||||||||
Sbjct 743 AAAGAGAGCTTCTGACAAATTGTACTGAGTTCCCAAGTCCTGATCTATTGATTAGGACAA 802
Query 650 GTGGAGAACAGAGGATTAGTGACTTCTTCTTGTGGCAACTTGCTTATACCGAGGTCTTCT 709
|||||||||||||||||||| |||||||||||||||||||||||||||| ||| ||||||
Sbjct 803 GTGGAGAACAGAGGATTAGTAACTTCTTCTTGTGGCAACTTGCTTATACAGAGCTCTTCT 862
Query 710 TCTCGCCGGTCCTTTGGCCTGATTTCGATAAGGATAAGCTTCTAGAGGCTCTCGCTTCGT 769
||||||||||||||||||||||||||||||||||||||||||||||||| || | |||||
Sbjct 863 TCTCGCCGGTCCTTTGGCCTGATTTCGATAAGGATAAGCTTCTAGAGGCCCTGGTTTCGT 922
Query 770 ATCAGCGCAGGGAAAGACGATTTGGTTGTCGGATTTGA 807
|||||||| |||||||||||||||| |||||| |||||
Sbjct 923 ATCAGCGCCGGGAAAGACGATTTGGCTGTCGGGTTTGA 960
> AT2G23400.1 | Symbols: | Undecaprenyl pyrophosphate synthetase
family protein | chr2:9963978-9965229 REVERSE LENGTH=762
Length=762
Score = 627 bits (339), Expect = 6e-179
Identities = 439/486 (90%), Gaps = 11/486 (2%)
Strand=Plus/Plus
Query 2 ATGAGAACGAGAAACGGTAGTTTGCACTTCTAATTAATCATACTTTTAGTTTTTATGATG 61
|||| |||||||||||||||||| | || | |||||||||||||||||||||||||||
Sbjct 4 ATGACAACGAGAAACGGTAGTTTACGGTT-T-TTTAATCATACTTTTAGTTTTTATGATG 61
Query 62 AGGGAACTTGTGTTGTCCGAGAGGAGGAGCTACAAAGAGAGCTGATGCCGAGGCACGTGG 121
||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 62 AGGCAACTTGTGTTGTCCGAGAGGAGGAGCTACAAAGAGAGCTGATGCCGAGACACGTGT 121
Query 122 CATTCATACTGGATGGGAACCGTAGATGGGCCAAACGAGACGGATTG-CTGACGTCACAA 180
|||||||||| ||||||||||| |||||||||||||||||||||||| | |||| |||||
Sbjct 122 CATTCATACTAGATGGGAACCGGAGATGGGCCAAACGAGACGGATTGAC-GACGGCACAA 180
Query 181 GGCCACGAGGCCGGAGCTAAACGGTTTATAGAGATCGCCGAGCTCTGCTTCGAACTCGGG 240
||||||||||| ||| ||||||| |||||||||| |||||| |||||||||| | |||
Sbjct 181 GGCCACGAGGCTGGAACTAAACGAATTATAGAGATAGCCGAGGTCTGCTTCGAGTT-GGG 239
Query 241 -ATTCATACAGTCTCAGCTTTTGCTTTCTCCACAGGGAATTGGGGAAGAGACAAGGATGA 299
|||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||
Sbjct 240 TATTCATACAGTCTCAGCTTTTGCTTTCTCCACAGAGAATTGGGGAAGAGACAAGTTTGA 299
Query 300 GGTCAAGTGGCTTA-TGTCTTTGTTCCAAC-ACCAACTCAAGTCCAACAGCCAATACTTT 357
||| ||||| |||| ||||||||||| ||| || | ||||||||||||| |||||||||
Sbjct 300 GGTTAAGTG-CTTAATGTCTTTGTTC-AACCACTACCTCAAGTCCAACATTCAATACTTT 357
Query 358 CACAGAAAGGAAATTCGCGTTTCTGTTATCGGGAATCAAACGAAGATCGATGAATCTATC 417
|| ||||||||| ||||||||||||||||||||||| ||||||||||| ||||||| ||
Sbjct 358 CAAAGAAAGGAAGTTCGCGTTTCTGTTATCGGGAATAAAACGAAGATCCCTGAATCTCTC 417
Query 418 CTCCAAGAAATCCATGAGATAGAGGAAGCTACGAAAGGCTACAAGAATAAGCATCTCATC 477
||| |||||||||||||||||||||||||||| || ||||||||||||||||||||||||
Sbjct 418 CTCAAAGAAATCCATGAGATAGAGGAAGCTACCAA-GGCTACAAGAATAAGCATCTCATC 476
Query 478 GTGGCA 483
|||||
Sbjct 477 ATGGCA 482
Score = 416 bits (225), Expect = 2e-115
Identities = 258/274 (94%), Gaps = 2/274 (1%)
Strand=Plus/Plus
Query 528 TCTTGTGAAGAAATCAGAGAGAGGGTTGATCCGAGAGCAAGACGTTGACGAGGCATTGAT 587
|||||||||||||||||| | |||||||||||||||| |||| || ||||||||||||||
Sbjct 483 TCTTGTGAAGAAATCAGAAAAAGGGTTGATCCGAGAGGAAGATGTAGACGAGGCATTGAT 542
Query 588 CGAGAGAGAGCTTCTGACGAATTGTAGTGACTTCCCAAGTCCTGATTTAATGATTAGGAC 647
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 543 CGAGAGAGAGCTTCTAACGAATTGTAGTGACTTCCCAAGTCCTGATTTAATGATTAGGAC 602
Query 648 AAGTGGAGAACAGAGGATTAGTGACTTCTTCTTGTGGCAACTTGCTTATACCGAGGTCTT 707
|||||||||||| ||||||||| |||||||||||||||||||||||||||||||| | ||
Sbjct 603 AAGTGGAGAACAAAGGATTAGTAACTTCTTCTTGTGGCAACTTGCTTATACCGAGCTTTT 662
Query 708 CTTCTCGCCGGTCCTT-TGGCCTGATTTCGATAAGGATAAGCTTCTAGAGGCTCTCGCTT 766
|| ||||||||| || ||||||||||||||||||||||||||||||||||| |||||||
Sbjct 663 CTACTCGCCGGTA-TTGTGGCCTGATTTCGATAAGGATAAGCTTCTAGAGGCCCTCGCTT 721
Query 767 CGTATCAGCGCAGGGAAAGACGATTTGGTTGTCG 800
|||||||| |||||||||||||||||||||||||
Sbjct 722 CGTATCAGGGCAGGGAAAGACGATTTGGTTGTCG 755
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39283102954
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5