BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg481211
Length=928
Score E
Sequences producing significant alignments: (Bits) Value
AT2G23410.1 | Symbols: ACPT, CPT | cis-prenyltransferase | chr2... 1125 0.0
AT5G58780.1 | Symbols: | Undecaprenyl pyrophosphate synthetase... 924 0.0
AT5G58782.1 | Symbols: | Undecaprenyl pyrophosphate synthetase... 632 2e-180
AT2G23400.1 | Symbols: | Undecaprenyl pyrophosphate synthetase... 494 8e-139
> AT2G23410.1 | Symbols: ACPT, CPT | cis-prenyltransferase | chr2:9966130-9967772
REVERSE LENGTH=1060
Length=1060
Score = 1125 bits (609), Expect = 0.0
Identities = 763/834 (91%), Gaps = 24/834 (3%)
Strand=Plus/Plus
Query 104 TCATCGGACTCATCAAAATCAAAGCTGCTCGAGACCATGGTGACAACAAGAAACGTGATG 163
|||||||||||||||||||||||||||||| | | |||||| ||||||||||||
Sbjct 144 TCATCGGACTCATCAAAATCAAAGCTGCTC--G---A----GACAACGAGAAACGTGATG 194
Query 164 AGGGAACTTATGTTGTCCGAGAGGA-GGAGCTACAAAGAGAGTTGATGCCGAGGCACGTA 222
||||||||||||||||||| ||||| || | |||||||||| | |||||||| |||||
Sbjct 195 AGGGAACTTATGTTGTCCGCGAGGATGG-GTTACAAAGAGAACTAATGCCGAGACACGTG 253
Query 223 GCATTCATATTGGATGGAAACCGGAGATGGGCCAAACGGGCCGGATTGACGACG-CAACA 281
||||||||| ||||||| |||||||||||||||||||||||||||||||||||| | |||
Sbjct 254 GCATTCATACTGGATGGGAACCGGAGATGGGCCAAACGGGCCGGATTGACGACGTC-ACA 312
Query 282 AGGCCACGAGGCAGGAGCTAAACGGCTTGTAGAAATCGCCGAGCTCTGCTTCGAGTTGGG 341
|||||||||||| ||||||||||||||| |||| ||||||||||||||||||||||||||
Sbjct 313 AGGCCACGAGGCGGGAGCTAAACGGCTTATAGATATCGCCGAGCTCTGCTTCGAGTTGGG 372
Query 342 GATTCATACAGTCTCAGCTTTTGTTTTCTCCACAGAGAATTGGGGAAGAGACAAGATTGA 401
| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 373 GGTTCATACAGTCTCAGCTTTTGCTTTCTCCACAGAGAATTGGGGAAGAGACAAGATTG- 431
Query 402 AG-TTGATAACTTAATGTCTTTGATCCAACACTACCGC---AAGTCCGACATCCAATTCT 457
|| |||||||||| |||||||||||||||||||||||| |||||| ||||| ||||||
Sbjct 432 AGATTGATAACTTGATGTCTTTGATCCAACACTACCGCAATAAGTCCAACATCAAATTCT 491
Query 458 TCCATAGATCGGAAATTCGCGTTTCTGTTATCGGGAATCAAACAAATATCTCTGAA-CAT 516
|||| ||||||||| ||||||||||||||||||||||| |||| || ||| ||||| | |
Sbjct 492 TCCACAGATCGGAAGTTCGCGTTTCTGTTATCGGGAATAAAACGAAGATCCCTGAATC-T 550
Query 517 CTCCTCCAAA-AACTCCATGAGATAGAGGAAGCTACGAAAGGCTACAAGAATAAGCATCT 575
||||| |||| || |||||||||||||||||||||| ||||||||||||||||| |||||
Sbjct 551 CTCCT-CAAAGAAATCCATGAGATAGAGGAAGCTACCAAAGGCTACAAGAATAAACATCT 609
Query 576 CATCGTGGCAATAGATTACAGCGGGAGATTCGATATCATGCACGCTTGCAAGAGTCTTGT 635
|||| ||||| ||||||||||||||| ||| ||||||||||| |||||||||||||||||
Sbjct 610 CATCATGGCAGTAGATTACAGCGGGAAATTTGATATCATGCATGCTTGCAAGAGTCTTGT 669
Query 636 GAAGAAATCAGAGAAAGGGTTGATCCGAGAGGAAGATGTAGACGAGGCATTGATTGAGAG 695
|||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 670 GAAGAAATCAGAAAAAGGGTTGATCCGAGAGGAAGATGTAGACGAGGCATTGATCGAGAG 729
Query 696 GGAGCTATTGACGAATTGTAGTGACTTCCCAAGTCCTGATTTAATGATTAGGACAAGTGG 755
||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 730 AGAGCTTTTGACAAATTGTAGTGACTTCCCAAGTCCTGATTTAATGATTAGGACAAGTGG 789
Query 756 AGAACAGAGGATTAGTAACTTCTTCTTGTGGCAACTTGCTTATACCGAGCTCTTT-TTCT 814
||||||||||||||||||||||||||||||||||||||||||| ||||||| ||| ||||
Sbjct 790 AGAACAGAGGATTAGTAACTTCTTCTTGTGGCAACTTGCTTATTCCGAGCT-TTTCTTCT 848
Query 815 CGCCGGTCTTTTGGCCTGATTTTGATAAGGATAAGCTTCTAGAGGCTCTGGATTCGTATC 874
||||||| |||||||||||||| |||||||||||||||||||||||||| | ||||||||
Sbjct 849 CGCCGGTATTTTGGCCTGATTTCGATAAGGATAAGCTTCTAGAGGCTCTTGCTTCGTATC 908
Query 875 AGCGCAGGGAAAGACGATTTGGCTGTCGTGTTTGATCCACATTTCATCCTTTCT 928
|||| ||||||||||||||||| ||||| ||||||||||| ||||||||| |||
Sbjct 909 AGCGTAGGGAAAGACGATTTGGTTGTCGGGTTTGATCCACCTTTCATCCTCTCT 962
> AT5G58780.1 | Symbols: | Undecaprenyl pyrophosphate synthetase
family protein | chr5:23735629-23737335 REVERSE LENGTH=1086
Length=1086
Score = 924 bits (500), Expect = 0.0
Identities = 712/814 (87%), Gaps = 16/814 (2%)
Strand=Plus/Plus
Query 107 TCGGACTCATCAAAATCAAAGCTGCTCGAGACCATGGTGACAACAAGAAACGTGATGAGG 166
||||| |||||||||||| | || | ||||| || ||||||| || ||||||| ||||
Sbjct 158 TCGGATTCATCAAAATCACATCTTCGAGAGACGATTATGACAACGAGCAACGTGACGAGG 217
Query 167 GAACTTATGTTGTCCGAGAGGAGGAGCTACAAAGAGAGTTGATGCCGAGGCACGTAGCAT 226
|||||||||| || ||| ||||||||||||||||||| ||||||| || || || |||
Sbjct 218 GAACTTATGTGGTAGGAGTGGAGGAGCTACAAAGAGAGCTGATGCCAAGACATGTGGCAG 277
Query 227 TCATATTGGATGGAAACCGGAGATGGGCCAAACGGGCCGGATTGAC-GACG-CAACAAGG 284
| ||| |||| ||||||||||||||||||||||||||||||||| | |||| | ||||||
Sbjct 278 TGATAATGGACGGAAACCGGAGATGGGCCAAACGGGCCGGATTG-CTGACGTC-ACAAGG 335
Query 285 CCACGAGGCAGGAGCTAAACGGCTTGTAGAAATCGCCGAGCTCTGCTTCGAGTTGGGGAT 344
||||||||| ||||||||||||||| |||| || ||||||| ||||| | ||||||||
Sbjct 336 CCACGAGGCCGGAGCTAAACGGCTTATAGAGTTCTCCGAGCTTTGCTTTAAATTGGGGAT 395
Query 345 TCATACAGTCTCAGCTTTTGTTTTCTCCACAGAGAATTGGGGAAGAGACAAGATTGAAGT 404
||||||||| |||||||||| |||||||||||||||||||||||| |||||||||| ||
Sbjct 396 TCATACAGTTTCAGCTTTTGCCTTCTCCACAGAGAATTGGGGAAGACACAAGATTGAGGT 455
Query 405 TGA-TAACTTAATGTCTTTGATCCAACACTACCGCAAGTCCGACATCCAAT-TCTTCCAT 462
| | | ||| ||||||||||||||||| |||| ||||||| | ||||||| | |||||
Sbjct 456 TAAGT-GCTTGATGTCTTTGATCCAACATTACCTCAAGTCCAAGATCCAATAT-TTCCAA 513
Query 463 AGATCGGAAATTCGCGTTTCTGTTATCGGGAATCAAACAAATATCTCTGA-ACATCTCCT 521
||| ||||| ||| ||||||||||||||||| | ||| || ||| |||| | ||||||
Sbjct 514 AGAGAGGAAACTCGAGTTTCTGTTATCGGGAACCTAACGAAGATCCCTGAGTC-TCTCCT 572
Query 522 CCAAAAACTCCATGAGATAGAGGAAGCTACGA-AAGGCTACAAGAATAAGCATCTCATCG 580
|| || | |||| ||||||||||||||||||| || |||| ||||| |||||||||||
Sbjct 573 CCGAACAGTCCAAGAGATAGAGGAAGCTACGAGAA-GCTATAAGAAGAAGCATCTCATAT 631
Query 581 TGGCAATAGATTACAGCGGGAGATTCGATATCATGC-ACGCTTGCAAGAGTCTTGTGAAG 639
||||||||||||||||||||||||| || ||| ||| | |||||||||||| ||||||||
Sbjct 632 TGGCAATAGATTACAGCGGGAGATTAGACATCTTGCGA-GCTTGCAAGAGTATTGTGAAG 690
Query 640 AAATCAGAGAAAGGGTTGATCCGAGAGGAAGATGTAGACGAGGCATTGATTGAGAGGGAG 699
|||||||| ||||||||||||||||||||||||||||||||||||||||| || || |||
Sbjct 691 AAATCAGAAAAAGGGTTGATCCGAGAGGAAGATGTAGACGAGGCATTGATCGAAAGAGAG 750
Query 700 CTAT-TGACGAATTGTAGTGACTTCCCAAGTCCTGATTTAATGATTAGGACAAGTGGAGA 758
|| | |||| ||||||| ||| ||||||||||||||| || |||||||||||||||||||
Sbjct 751 CT-TCTGACAAATTGTACTGAGTTCCCAAGTCCTGATCTATTGATTAGGACAAGTGGAGA 809
Query 759 ACAGAGGATTAGTAACTTCTTCTTGTGGCAACTTGCTTATACCGAGCTCTTTTTCTCGCC 818
|||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||
Sbjct 810 ACAGAGGATTAGTAACTTCTTCTTGTGGCAACTTGCTTATACAGAGCTCTTCTTCTCGCC 869
Query 819 GGTCTTTTGGCCTGATTTTGATAAGGATAAGCTTCTAGAGGCTCTGGATTCGTATCAGCG 878
|||| ||||||||||||| ||||||||||||||||||||||| |||| ||||||||||||
Sbjct 870 GGTCCTTTGGCCTGATTTCGATAAGGATAAGCTTCTAGAGGCCCTGGTTTCGTATCAGCG 929
Query 879 CAGGGAAAGACGATTTGGCTGTCGTGTTTGATCC 912
| |||||||||||||||||||||| |||||||||
Sbjct 930 CCGGGAAAGACGATTTGGCTGTCGGGTTTGATCC 963
> AT5G58782.1 | Symbols: | Undecaprenyl pyrophosphate synthetase
family protein | chr5:23738147-23739468 REVERSE LENGTH=1067
Length=1067
Score = 632 bits (342), Expect = 2e-180
Identities = 617/748 (82%), Gaps = 26/748 (3%)
Strand=Plus/Plus
Query 190 GAGCTACAAAGAGAGTTGATGCCGAGGCACGTAGCATTCATATTGGATGGAAACCGGAGA 249
||||| || |||||| |||||||||| ||||| ||| | ||| |||| ||||||||||||
Sbjct 189 GAGCTTCAGAGAGAGCTGATGCCGAGACACGTGGCAGTGATAATGGACGGAAACCGGAGA 248
Query 250 TGGGCCAAACGGGCCGGATTGACGACG-CAACAAGGCCACGAGGCAGGAGCTAAACGGCT 308
||||| |||| | |||||||| |||| | ||||||| ||||||| ||||||||||||||
Sbjct 249 TGGGCTAAACAGACCGGATTGTTGACGTC-ACAAGGCTACGAGGCTGGAGCTAAACGGCT 307
Query 309 TGTAGAAATCGCCGAGCTCTGCTTCGAGTTGGGGATTCATACAGTCTCAGCTTTTGTTTT 368
| | || |||| || ||||||||| | | ||||| |||| ||||||||||||| |||
Sbjct 308 TCTCGAGTTCGCTGACCTCTGCTTCAAACTAGGGATAAATACTGTCTCAGCTTTTGCTTT 367
Query 369 CTCCACAGAGAATTGGGGAAGAGACAAGATTGAAGTTGATAA--CTTAATGTCTTTGATC 426
|||||| ||||||||||||||| |||||||||||| | | || ||| |||| |||| ||
Sbjct 368 CTCCACTGAGAATTGGGGAAGACACAAGATTGAAG-TCA-AATGCTTGATGTATTTGTTC 425
Query 427 CAACACTACCGCAAGTCCGACATCCAATTCTTCCATAG-ATCGGAAATTCGCGTTTCTGT 485
|||| |||| |||||| | |||||||| ||||| || | |||||| || ||||||||
Sbjct 426 CAACGTTACCTCAAGTCAAAGATCCAATTTTTCCAGAGCA-AGGAAATCCGAGTTTCTGT 484
Query 486 TATCGGGAATCAAACAAATATCTCTGA-ACATCTCCTCCAAAAACTCCATGAGATAGAGG 544
||||||||||| | || ||| |||| | |||||||| || | | || ||| ||||||
Sbjct 485 TATCGGGAATCTTGCGAAGATCCCTGAGTC-TCTCCTCCGAACAGTTCACGAGTTAGAGG 543
Query 545 AAGCTACGAAAG-GCTACAAGAATAAGCATCTCATCGTGGCAATAGATTACAGCGGGAGA 603
||||||| |||| | |||||||| |||||||||||| |||| ||||||||||||||||||
Sbjct 544 AAGCTAC-AAAGAGTTACAAGAAGAAGCATCTCATCTTGGCCATAGATTACAGCGGGAGA 602
Query 604 TTCGATATCATGCACGCTTGCAAGAGTC-TTGTGAAGAAATCAGAGA-AAGGGTTGATCC 661
||||| ||| || |||||||||| | |||||||||||||||| | |||| |||||||
Sbjct 603 TTCGACATCTTGGGTGCTTGCAAGA-ACATTGTGAAGAAATCAGA-ACAAGGTTTGATCC 660
Query 662 GAGAGGAAGATGTAGACGAGGCATTGATT-GAGAGGGAGCTAT-TGACGAATTGTAGTGA 719
|||||||||| || |||||| | ||| || ||||| ||||| | ||| |||| ||
Sbjct 661 GAGAGGAAGACGTGGACGAGACGTTG-TTCGAGAGAGAGCT-TCAGACTCGGTGTACCGA 718
Query 720 CTTCCCAAGTCCTGATTTAATGATTAGGACAAGTGGAGAACAGAGGATTAGTAACTTCTT 779
||||||||||||||| | |||||||||| ||||| |||||||||||||||||||||||
Sbjct 719 GTTCCCAAGTCCTGATCTCTTGATTAGGACTAGTGGGGAACAGAGGATTAGTAACTTCTT 778
Query 780 CTTGTGGCAACTTGCTTATACCGAGCTCTT-TTTCTCGCCGGT-CTTTTGGCCTGATTTT 837
||||||||| || |||||||||||| | || ||| ||||| || |||| ||||||||||
Sbjct 779 CTTGTGGCAGCTCGCTTATACCGAGTTTTTCTTT-TCGCCTGTACTTT-GGCCTGATTTC 836
Query 838 GATAAGGATAAGCTTCTAGAGGCTCTGGATTCGTATCAGCGCAGGGAAAGACGATTTGGC 897
|||||| | ||| || ||||||| |||| |||||||||||||||||| ||||||||||||
Sbjct 837 GATAAGCAGAAGTTTATAGAGGCCCTGGTTTCGTATCAGCGCAGGGATAGACGATTTGGC 896
Query 898 TGTCGTG-TTTGATCCACATTTCATCCT 924
| || | |||||||||||||| |||||
Sbjct 897 TCCCG-GCTTTGATCCACATTTGATCCT 923
> AT2G23400.1 | Symbols: | Undecaprenyl pyrophosphate synthetase
family protein | chr2:9963978-9965229 REVERSE LENGTH=762
Length=762
Score = 494 bits (267), Expect = 8e-139
Identities = 380/433 (88%), Gaps = 13/433 (3%)
Strand=Plus/Plus
Query 159 TGATGAGGGAACTTATGTTGTCCGAGAGGAGGAGCTACAAAGAGAGTTGATGCCGAGGCA 218
|||||||| ||||| ||||||||||||||||||||||||||||||| |||||||||| ||
Sbjct 57 TGATGAGGCAACTTGTGTTGTCCGAGAGGAGGAGCTACAAAGAGAGCTGATGCCGAGACA 116
Query 219 CGTAG-CATTCATATTGGATGGAAACCGGAGATGGGCCAAACGGGCCGGATTGACGACG- 276
||| | |||||||| | ||||| |||||||||||||||||||| | |||||||||||||
Sbjct 117 CGT-GTCATTCATACTAGATGGGAACCGGAGATGGGCCAAACGAGACGGATTGACGACGG 175
Query 277 CAACAAGGCCACGAGGCAGGAGCTAAACGGCTTGTAGAAATCGCCGAGCTCTGCTTCGAG 336
|| |||||||||||||| ||| ||||||| || |||| || |||||| |||||||||||
Sbjct 176 CA-CAAGGCCACGAGGCTGGAACTAAACGAATTATAGAGATAGCCGAGGTCTGCTTCGAG 234
Query 337 TTGGGGATTCATACAGTCTCAGCTTTTGTTTTCTCCACAGAGAATTGGGGAAGAGACAAG 396
||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 235 TTGGGTATTCATACAGTCTCAGCTTTTGCTTTCTCCACAGAGAATTGGGGAAGAGACAAG 294
Query 397 ATTGAAGTTGA-TAACTTAATGTCTTTGATCCAAC-ACTACCGCAAGTCCGACATCCAAT 454
|||| ||| | | ||||||||||||| || ||| |||||| ||||||| |||| ||||
Sbjct 295 TTTGAGGTTAAGTG-CTTAATGTCTTTGTTC-AACCACTACCTCAAGTCCAACATTCAAT 352
Query 455 TCTTCCATAGATCGGAAATTCGCGTTTCTGTTATCGGGAATCAAACAAATATCTCTGAA- 513
||| || ||| |||| ||||||||||||||||||||||| |||| || ||| |||||
Sbjct 353 ACTTTCAAAGAAAGGAAGTTCGCGTTTCTGTTATCGGGAATAAAACGAAGATCCCTGAAT 412
Query 514 CATCTCCTCCAA-AAACTCCATGAGATAGAGGAAGCTACGAAAGGCTACAAGAATAAGCA 572
| ||||||| || ||| |||||||||||||||||||||| || |||||||||||||||||
Sbjct 413 C-TCTCCTCAAAGAAA-TCCATGAGATAGAGGAAGCTACCAA-GGCTACAAGAATAAGCA 469
Query 573 TCTCATCGTGGCA 585
||||||| |||||
Sbjct 470 TCTCATCATGGCA 482
Score = 407 bits (220), Expect = 1e-112
Identities = 262/282 (93%), Gaps = 4/282 (1%)
Strand=Plus/Plus
Query 630 TCTTGTGAAGAAATCAGAGAAAGGGTTGATCCGAGAGGAAGATGTAGACGAGGCATTGAT 689
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 483 TCTTGTGAAGAAATCAGAAAAAGGGTTGATCCGAGAGGAAGATGTAGACGAGGCATTGAT 542
Query 690 TGAGAGGGAGCTAT-TGACGAATTGTAGTGACTTCCCAAGTCCTGATTTAATGATTAGGA 748
||||| ||||| | | |||||||||||||||||||||||||||||||||||||||||||
Sbjct 543 CGAGAGAGAGCT-TCTAACGAATTGTAGTGACTTCCCAAGTCCTGATTTAATGATTAGGA 601
Query 749 CAAGTGGAGAACAGAGGATTAGTAACTTCTTCTTGTGGCAACTTGCTTATACCGAGCTCT 808
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 602 CAAGTGGAGAACAAAGGATTAGTAACTTCTTCTTGTGGCAACTTGCTTATACCGAGCT-T 660
Query 809 TTTT-CTCGCCGGTCTTTTGGCCTGATTTTGATAAGGATAAGCTTCTAGAGGCTCTGGAT 867
|| | ||||||||| || ||||||||||| ||||||||||||||||||||||| || | |
Sbjct 661 TTCTACTCGCCGGTATTGTGGCCTGATTTCGATAAGGATAAGCTTCTAGAGGCCCTCGCT 720
Query 868 TCGTATCAGCGCAGGGAAAGACGATTTGGCTGTCGTGTTTGA 909
||||||||| ||||||||||||||||||| ||||| || |||
Sbjct 721 TCGTATCAGGGCAGGGAAAGACGATTTGGTTGTCGCGTGTGA 762
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45361434741
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5