BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg481213
Length=909
Score E
Sequences producing significant alignments: (Bits) Value
AT2G23430.1 | Symbols: ICK1, KRP1 | Cyclin-dependent kinase inh... 1186 0.0
> AT2G23430.1 | Symbols: ICK1, KRP1 | Cyclin-dependent kinase inhibitor
family protein | chr2:9976746-9978021 REVERSE LENGTH=950
Length=950
Score = 1186 bits (642), Expect = 0.0
Identities = 849/940 (90%), Gaps = 50/940 (5%)
Strand=Plus/Plus
Query 1 TTCTTCTTCTTCCTCGTCCTCTCAATCATAtctctctctctctctctTTTCAGAGATTTT 60
||||||||||||||| |||||||||||||| |||||||||||| |||||||| |
Sbjct 18 TTCTTCTTCTTCCTCATCCTCTCAATCATA----TCTCTCTCTCTC---ACAGAGATTGT 70
Query 61 GACTTCACGCACACGTAACCTAAATCGAAGATGGTGAGAAAATGTAGAAAAGGTGAAGGA 120
||||||||||||||||||||||||||||||||||||||||||| |||||||| | |||||
Sbjct 71 GACTTCACGCACACGTAACCTAAATCGAAGATGGTGAGAAAATATAGAAAAGCTAAAGGA 130
Query 121 ATCGTAGAAGCTGGAGTTTCGTCAACGTATATGCAGCTTCGTAGCCGGAGAATTGTTTAT 180
|| ||||||||||||||||||||||||||||||||||| || ||||||||||||||||||
Sbjct 131 ATTGTAGAAGCTGGAGTTTCGTCAACGTATATGCAGCTACGGAGCCGGAGAATTGTTTAT 190
Query 181 GTTAGATCGG--AAA--AAGCT-AG----C-TC--CGGTGATAATGGAGTTTCGTCGTCT 228
|||||||||| ||| ||||| | | || |||||||||||||||||||||||||
Sbjct 191 GTTAGATCGGAAAAATCAAGCTCTGTCTCCGTCGTCGGTGATAATGGAGTTTCGTCGTCT 250
Query 229 TGTTGTGGAAGCAATGAATATAAGAACAATGAATTTATAGATCTGGAGGAGGAAGATAAA 288
||| |||||||||||||||||||||| || ||||| ||| ||||||||||||||||||||
Sbjct 251 TGTAGTGGAAGCAATGAATATAAGAAGAAAGAATTAATACATCTGGAGGAGGAAGATAAA 310
Query 289 GATGGTGACACTGAAACGTCGGCGTATCGACGGAGTACGAAGAGGAAGCTTTTCGAAAA- 347
||||||||||||||||||||| ||||||||||| ||||||||||||||||||| |||||
Sbjct 311 GATGGTGACACTGAAACGTCGACGTATCGACGGGGTACGAAGAGGAAGCTTTTTGAAAAT 370
Query 348 CATGAGAGAGGAGGAGAAAGAAGAATTAAGTAAATCTATGGAGAGTTATTCATCGGAATT 407
| |||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||
Sbjct 371 C-TGAGAGAGGAGGAGAAAGAAGAATTAAGTAAATCCATGGAGAATTATTCATCGGAATT 429
Query 408 TGAATCGGCGGTTAAAGAATCGTTAGATTGTTGTTGTAGCGGGA-GAAGAACCACGGAGG 466
|||||||||||||||||||||||||||||||||||||||||||| ||| ||| | |||||
Sbjct 430 TGAATCGGCGGTTAAAGAATCGTTAGATTGTTGTTGTAGCGGGAGGAA-AACGATGGAGG 488
Query 467 AGACTGCGACGAC-GA--AGGAGGAGATGGCGAAATCGACGACTGAGATGCCAACGGAAT 523
|||| | |||| | || ||||||||| |||||||| || ||| ||||||||||||||||
Sbjct 489 AGACGGTGACGGCGGAGGAGGAGGAGAAGGCGAAATTGATGACGGAGATGCCAACGGAAT 548
Query 524 CGGAAATTGAAGAtttttttGTGGAAGCTGAGAAACAGCTCAATGAAAAATTCAAGAAGA 583
||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||
Sbjct 549 CGGAAATTGAAGATTTTTTTGTGGAAGCTGAGAAACAACTCAAAGAAAAATTCAAGAAGA 608
Query 584 AGTACAATTTCGATTTCGAGAAGGAGAAGCCATTAGAAGGACGTTACGAATGGGTAAAGT 643
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 609 AGTACAATTTCGATTTCGAGAAGGAGAAGCCATTAGAAGGACGTTACGAATGGGTAAAGT 668
Query 644 TAGAGTGAAGAAAAAGAAGAAGAAGtttatg-tttatattt-aacttttttagatttta- 700
|||||||||||| |||||||||||||||| ||| | ||| |||||||| ||||||||
Sbjct 669 TAGAGTGAAGAA---GAAGAAGAAGTTTATGGTTTTTTTTTTAACTTTTT-AGATTTTAA 724
Query 701 t-tttcagagaataagttaatttttattttattttgttgatttCGAAATAGGAGATTTGT 759
| |||||| ||||||||||||||| ||||| |||||||| |||||| ||||||||
Sbjct 725 TATTTCAGGGAATAAGTTAATTTT-ATTTT-----GTTGATTTGGAAATATAAGATTTGT 778
Query 760 AGAAG-AATGTTTTTAGAAGTACGAAATTGCACAGAAAAAGAAGAAAGCTTTTTAACAGA 818
|| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 779 AGGAGGAATGTTTTTAGAAGTACGAAATTGCACAGAAAAAGAAGAAAGCTTTTTAACAGA 838
Query 819 TTT-AGAGCCCAGAAAAGTCGTGTCTTTTAGCTCTACTTTTACCTCTTCTTCT--TC--G 873
||| |||||||||||||||||||||||||||||||||||||||||||||||| || |
Sbjct 839 TTTTAGAGCCCAGAAAAGTCGTGTCTTTTAGCTCTACTTTTACCTCTTCTTCGAATCTTG 898
Query 874 A--ATCTTT-AGCATATTCTT-AGTACAtttttttGTTTT 909
|||||| ||||||||||| ||||||||||| ||||||
Sbjct 899 TGTATCTTTTAGCATATTCTTTAGTACATTTTTATGTTTT 938
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 44406985948
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5