BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg481217
Length=1625
Score E
Sequences producing significant alignments: (Bits) Value
AT2G23470.1 | Symbols: RUS4 | Protein of unknown function, DUF6... 2407 0.0
AT2G23460.1 | Symbols: XLG1, ATXLG1 | extra-large G-protein 1 |... 62.1 2e-08
> AT2G23470.1 | Symbols: RUS4 | Protein of unknown function, DUF647
| chr2:9998982-10001509 REVERSE LENGTH=1797
Length=1797
Score = 2407 bits (1303), Expect = 0.0
Identities = 1499/1595 (94%), Gaps = 7/1595 (0%)
Strand=Plus/Plus
Query 1 CCTTAAACCCTAAGAACTCTGATGCATTCAGCGAACCCAAGCTCTCGACTTTTTCTATAC 60
||| |||||||||||||||||||||||||| |||| | ||||||||||||||||| ||||
Sbjct 91 CCTAAAACCCTAAGAACTCTGATGCATTCAACGAATCAAAGCTCTCGACTTTTTCAATAC 150
Query 61 CCATGTAAATCAACATCAACCCAATATCCAATCTTCAATTTCCCCAAATTTTCTTCAAGA 120
||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||
Sbjct 151 CCATGTAAATCAACATCAACCCAATATCCAATCTTCATTTTCCCCAAATTTTCGTCAAGA 210
Query 121 AAATTCGTCAAGTCTCTGAGAACTTCCATTGATTACGAGCAAGAAGTA---TCGAAAGAA 177
|||||||||||||||||||||||||||||||||||| ||||||||| | || ||||||
Sbjct 211 AAATTCGTCAAGTCTCTGAGAACTTCCATTGATTACAAGCAAGAAGGAGCTTCAAAAGAA 270
Query 178 GAACTCGTAGTACCCAGTAACGTAACCCGTCGTCTTCCTATCATAATCAAAAAGTCTGGC 237
|| ||||||||||||||||||||| | ||||||||||| || ||||||||||||||||||
Sbjct 271 GACCTCGTAGTACCCAGTAACGTAGCTCGTCGTCTTCCAATTATAATCAAAAAGTCTGGC 330
Query 238 AAAGTTTCTAGGTACTTCATCAAAGGAGATTCCTTGGAGTTGCTATGTGTTGATGAAGAA 297
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 331 AAAGTTTCTAGGTACTTCATCAAAGGAGATTCCTTGGAGCTGCTATGTGTTGATGAAGAA 390
Query 298 GAAGATGATTCGACGTCGTTTTGCCTTGGCCTCGACGATGGTTTCTGGAAATTGATTAGA 357
||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||
Sbjct 391 GAAGATGATTCGACGTCGTTTTGCCTTGGCCTCGATGATGGTTTCTGGAAATTGATAAGA 450
Query 358 CTTTCATCTTCAGCTGCAAAAGACTTCTTTTTACCGAAACAAGTCAGTGACAATTACATA 417
||| | |||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 451 CTTACTTCTTCAGCTGCAAAAGACTTCTTTTTACCGAAACAAGTCAGTGACAATTATATA 510
Query 418 AGTTATGTCAAATGGAAGTTTTTGCACAGAGTTTTCAGCTCTGCTTTACAAGTTCTTGCC 477
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 511 AGTTATGTCAAATGGAAGTTTTTGCACAGAGTTTTCAGCTCTGCTTTACAAGTTCTTGCC 570
Query 478 ACTCAGGTAATGTTTAGAGCCATAGGAATTGGACAATCTCGGTCACTTGCTTCATCTGCT 537
||||||| |||||||||||| |||||||||||||||||||||||||| ||||||||||||
Sbjct 571 ACTCAGGCAATGTTTAGAGCAATAGGAATTGGACAATCTCGGTCACTAGCTTCATCTGCT 630
Query 538 GCTTTTAATTGGATTTTGAAAGATGGCCTTGGACGGTTAAGTAGATGTATATACACTGCT 597
|||||||| ||||||||||||||||| |||||| ||||||||||||||||||||||||||
Sbjct 631 GCTTTTAACTGGATTTTGAAAGATGGACTTGGAAGGTTAAGTAGATGTATATACACTGCT 690
Query 598 AGTCTTGCTTCTGCTTTTGACACTAATTTGAAGAGAGTTAGGTTTTCGACGTCTGTACTC 657
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 691 AGTCTTGCTTCTGCTTTTGACACTAATTTGAAGAGAGTTAGGTTCTCGACGTCTGTACTC 750
Query 658 TTCAGTCTAAGCATTGGAGTGGAGTTAATGACTCCAGTATTCCCTCAGTACTTCCTTTTG 717
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 751 TTCAGTCTAAGCATTGGAGTTGAGTTAATGACTCCAGTATTCCCTCAGTACTTCCTTTTG 810
Query 718 CTAGCTTCCATCGCTAACATCGCTAAACAGATTAGTCTGTCGTGCTACTTAGCAACCGGT 777
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 811 CTAGCTTCCATCGCTAACATCGCTAAACAGATTAGCCTGTCGTGCTACTTAGCAACCGGT 870
Query 778 TCAGCTGTACATCGAAGCTTTGCTGTAGCGGATAACCTCGGTGAAGTCTCTGCAAAGGCA 837
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 871 TCAGCTGTACATCGAAGCTTTGCTGTAGCGGATAACCTTGGTGAAGTCTCTGCAAAGGCA 930
Query 838 CAGATTCAAACCGTGTGTTTTGATAATCTTGGTCTCCTACTGGCGGTTCTTCTAAATATG 897
||||||||||| || ||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 931 CAGATTCAAACTGTTTGTTTTGATAACCTTGGTCTCCTACTGGCGGTTCTTCTAAATATG 990
Query 898 CTATTCCAAAACAACCAAAGACTGCAGGCAAGTCTACCTTTTGTTCTATATCCAATTTTC 957
||||||||| |||||||||||||||||||| |||||||||||||||||||||| ||||||
Sbjct 991 CTATTCCAACACAACCAAAGACTGCAGGCATGTCTACCTTTTGTTCTATATCCGATTTTC 1050
Query 958 TCCACGTTTGATCTCCTTGGCATTTATCAAGGGCTCAAGCATATCAATCTGCAAACTTTA 1017
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1051 TCCACGTTTGATCTCCTTGGCATTTATCAAGGGCTCAAGCATATCAATCTGCAAACTTTG 1110
Query 1018 ACCAAGGATAGGCTTGAAATAATACTGGAAAGATGGATTGAATTCAGGCAAGTACCTTCC 1077
|||||||||||||||||||| || |||||||||||||||||||| |||||||||||||||
Sbjct 1111 ACCAAGGATAGGCTTGAAATTATTCTGGAAAGATGGATTGAATTTAGGCAAGTACCTTCC 1170
Query 1078 CCTGCCGAAGTGAGTGAAGAGGAAGGAATTGACCTTTTAGGGAGCAGAGGTAGCAAAAGG 1137
||||||||||||||||||||||||||||||| |||||||||||| |||||||||||| ||
Sbjct 1171 CCTGCCGAAGTGAGTGAAGAGGAAGGAATTGGCCTTTTAGGGAGTAGAGGTAGCAAACGG 1230
Query 1138 GTTTGGCCCATTAGAATCGGATGCTTAGATCCTAAGGCTCAGATTCCTACACTATCGATG 1197
||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1231 GTTTGGCCCATCAGAATCGGATGCTTAGATCCTAAGGCCCAGATTCCTACACTATCGATG 1290
Query 1198 ATGGCGATGCAATCACTCTGCAATGATGATAGTTTCTTCATAACCATTGAACTTTCCTCT 1257
||||| |||||||||||||||| ||||||| ||| |||||||||||| |||||||||||
Sbjct 1291 ATGGCCATGCAATCACTCTGCAGTGATGATGGTTACTTCATAACCATGGAACTTTCCTCC 1350
Query 1258 AAAGGTTTTAGAAGAACACCAAAACCGGGCATCGTTATTTGTCTGCGTGAAGGAGCCAAC 1317
||||||| ||||||| ||||||| |||||||||||||||||||||| ||||||||||||
Sbjct 1351 CAAGGTTTCAGAAGAATACCAAAATCGGGCATCGTTATTTGTCTGCGCGAAGGAGCCAAC 1410
Query 1318 AGTGTAGACATTATCACGAGTTTGTTGCAGACATGTTACATACGTGAAGCCTTTGGAACC 1377
||||||||| |||||||||||||||| |||||||||||||||||| || || ||||| ||
Sbjct 1411 AGTGTAGACGTTATCACGAGTTTGTTACAGACATGTTACATACGTAAATCCCTTGGAGCC 1470
Query 1378 AATCGAATCAAGAGAAGAGACGTATCATTGTCAGACTTGACGCTACAAGATTGGTCCTTA 1437
||| ||| ||||||||| | |||| || |||||||||||||||||||||||| ||||
Sbjct 1471 AATAGAACCAAGAGAAGCTATTTATCGTTTTCAGACTTGACGCTACAAGATTGGACCTTG 1530
Query 1438 CTCAC-AGGAGAGAGTAAGCGAGCTGCACGAGATGATATTATCACACTGAACAGACAACT 1496
||||| || |||||||||||||||||| |||||||||| |||| ||||||||| |||| |
Sbjct 1531 CTCACTAG-AGAGAGTAAGCGAGCTGCTCGAGATGATAATATCGCACTGAACAAACAAAT 1589
Query 1497 GCAAGAACATGGATGGATTGTGAAGAATGTTTTGTTGTGTGCAGAAGAACA-AGTTAGAT 1555
||||||||| || ||||| || |||||||| |||||| |||||||||| || | ||||||
Sbjct 1590 GCAAGAACAAGGTTGGATCGTAAAGAATGTCTTGTTGAGTGCAGAAGAGCAGA-TTAGAT 1648
Query 1556 ATACTTTCGACAAAACCCAATTGTAACATAAAAGA 1590
| | ||| ||||||| |||||||||||||||||||
Sbjct 1649 ACATTTTTGACAAAAACCAATTGTAACATAAAAGA 1683
Score = 62.1 bits (33), Expect = 2e-08
Identities = 35/36 (97%), Gaps = 0/36 (0%)
Strand=Plus/Plus
Query 1590 ATCTACGTGGCAATCTATACACAAGAAAGGTGTTAC 1625
||||||||||||||||||||||||||||| ||||||
Sbjct 1761 ATCTACGTGGCAATCTATACACAAGAAAGTTGTTAC 1796
> AT2G23460.1 | Symbols: XLG1, ATXLG1 | extra-large G-protein 1
| chr2:9995478-9999122 FORWARD LENGTH=3065
Length=3065
Score = 62.1 bits (33), Expect = 2e-08
Identities = 35/36 (97%), Gaps = 0/36 (0%)
Strand=Plus/Minus
Query 1590 ATCTACGTGGCAATCTATACACAAGAAAGGTGTTAC 1625
||||||||||||||||||||||||||||| ||||||
Sbjct 2961 ATCTACGTGGCAATCTATACACAAGAAAGTTGTTAC 2926
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 80270671455
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5