BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg481221
Length=1310
Score E
Sequences producing significant alignments: (Bits) Value
AT2G23540.1 | Symbols: | GDSL-like Lipase/Acylhydrolase superf... 1873 0.0
> AT2G23540.1 | Symbols: | GDSL-like Lipase/Acylhydrolase superfamily
protein | chr2:10024346-10026233 FORWARD LENGTH=1359
Length=1359
Score = 1873 bits (1014), Expect = 0.0
Identities = 1148/1213 (95%), Gaps = 8/1213 (1%)
Strand=Plus/Plus
Query 1 TTTTTCAAAATCAAGAGATATGGCCACAAGAGCTTCTACTTCAAGCAGAGTCTCAGCCAT 60
||| |||||||||||| |||||||||||||||||||||| || ||||||||||| |||
Sbjct 2 TTTCTCAAAATCAAGAAATATGGCCACAAGAGCTTCTACATCTAGCAGAGTCTC-TCCA- 59
Query 61 GGACATGACTCTCTACTTCGCCTTCTTCTTCCTTTTAACTCTCACTGCTTCAGTGGAAGC 120
| | | | || | | ||| | |||||||||| ||| |||||||||||||||| |||||
Sbjct 60 -G-C-TTTCACT-TTCCTCGTCATCTTCTTCCTCTTATCTCTCACTGCTTCAGTAGAAGC 115
Query 121 TGCTGGTCGTGGAGTTAACAATGATAACAAAGGCAGCGGATTAGGAGCTTCTTTCATATT 180
|||||||||||||||||||||||| || |||||| |||||||||||||||||||||||||
Sbjct 116 TGCTGGTCGTGGAGTTAACAATGACAAGAAAGGCGGCGGATTAGGAGCTTCTTTCATATT 175
Query 181 CGGAGATTCTCTAGTCGATGCCGGAAATAATAATTATCTATCGACGTTGTCTAGGGCCAA 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 176 CGGAGATTCTCTAGTCGATGCCGGAAATAATAATTATCTATCGACGTTGTCTAGGGCTAA 235
Query 241 TATGAAGCCTAATGGTATTGATTTCAAAGCCTCCGGAGGAAATCCTACCGGCCGGTTCAC 300
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 236 TATGAAGCCTAATGGTATTGATTTCAAAGCCTCCGGAGGAACTCCTACCGGCCGGTTCAC 295
Query 301 TAATGGCCGGACCATCGGTGACATCGTTGGGGAAGAACTCGGATCAGCGAACTGTGCGGT 360
||||| |||||||||||||| ||||||||||||||||||||||||||||||| ||| |
Sbjct 296 CAATGGACGGACCATCGGTGATATCGTTGGGGAAGAACTCGGATCAGCGAACTACGCGAT 355
Query 361 CCCATTCTTGGCACCTA-ACGCGAAGGGAAAAGCTTTATTAGCCGGTGTGAATTATGCAT 419
||| ||||||||||| | |||||||||||||||||||||||||||| ||||| |||||||
Sbjct 356 CCCGTTCTTGGCACC-AGACGCGAAGGGAAAAGCTTTATTAGCCGGAGTGAACTATGCAT 414
Query 420 CTGGAGGAGGAGGAATCATGAATGCCACCGGGAGAATCTTTGTGAATAGGTTAGGTATGG 479
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 415 CTGGAGGAGGAGGAATCATGAATGCCACCGGGAGAATCTTTGTGAATAGATTAGGTATGG 474
Query 480 ATGTACAAGTTGATTTCTTCAACACTACACGGAAACAGTTTGATGATCTACTTGGAAAAG 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 475 ATGTACAAGTTGATTTCTTCAACACTACACGGAAACAGTTTGATGATCTACTTGGAAAAG 534
Query 540 AGAAAGCAAAAGAATACATAGGAAAGAAATCGATATTCTCAATCACTATAGGAGCAAATG 599
||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 535 AGAAAGCAAAAGATTACATAGCCAAGAAATCGATATTCTCAATCACTATAGGAGCAAATG 594
Query 600 ATTTCCTCAACAATTATCTATTCCCACTTCTCTCCGTCGGAACACGGTTCAGTCAAACTC 659
|||||||||||||||||||||||||||| ||||| || ||||||||||||| ||||||||
Sbjct 595 ATTTCCTCAACAATTATCTATTCCCACTACTCTCGGTAGGAACACGGTTCACTCAAACTC 654
Query 660 CCGATGATTTCATTGGCGACATGCTTGAACATCTACGCGACCAACTAACCAGGCTGTATC 719
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 655 CCGATGATTTTATTGGCGACATGCTTGAACATCTACGCGACCAACTAACCAGGCTGTATC 714
Query 720 AATTGGATGCGAGGAAGTTTGTGATCGGGAACGTTGGACCGATTGGATGCATACCGTACC 779
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 715 AATTGGATGCGAGGAAGTTTGTGATCGGGAACGTTGGACCGATTGGATGCATACCGTACC 774
Query 780 AGAAAACGATTAATCAATTAGAAGAAAACGATTGTGTGGACTTGGCTAATAAGCTAGCAA 839
||||||| || ||||||||||| |||||||| |||||||| ||||||||||| |||||||
Sbjct 775 AGAAAACAATCAATCAATTAGACGAAAACGAGTGTGTGGATTTGGCTAATAAACTAGCAA 834
Query 840 ATCAATACAATGTTCGGTTAAAGAGTTTATTAGAGGAACTAAACAAGAAACTTCCCGGAG 899
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 835 ATCAATACAATGTTCGGTTAAAGAGTTTATTAGAGGAACTAAACAAGAAACTTCCCGGAG 894
Query 900 CAATGTTCGTCCATGCCAATGTCTACGATCTCGTCATGGAGCTCATTACTAACTACGATA 959
||||||| |||||||| || ||||||||||||||||||||||||||||||||||||||||
Sbjct 895 CAATGTTTGTCCATGCAAACGTCTACGATCTCGTCATGGAGCTCATTACTAACTACGATA 954
Query 960 AATACGGGTTCAAATCTGCGACAAAGGCTTGTTGCGGTAATGGAGGACAATAAGCGGGTA 1019
|||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||
Sbjct 955 AATACGGGTTCAAAAGTGCGACAAAGGCTTGTTGCGGTAATGGAGGACAATACGCGGGTA 1014
Query 1020 TAATTCCGTGCGGACCGACTTCGAGTTTGTGTGAAGAGAGGGATAAATATGTGTTTTGGG 1079
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1015 TAATTCCGTGCGGACCGACTTCGAGTTTGTGTGAAGAGAGGGATAAATATGTGTTTTGGG 1074
Query 1080 ATCCTTATCACCCGAGTGAAGCAGCAAATGTTATCATCGCAAAGCAATTGTTATATGGTG 1139
|||||||||| |||||||||||||||||||| |||||||| |||||||||||||||||||
Sbjct 1075 ATCCTTATCATCCGAGTGAAGCAGCAAATGTCATCATCGCGAAGCAATTGTTATATGGTG 1134
Query 1140 ATACAAAAGTTATATCTCCTGTTAATCTCAGCAAACTTAGAGATATGTGATTTGATTGTT 1199
|| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1135 ATGTTAAAGTTATATCTCCAGTTAATCTCAGCAAACTTAGAGATATGTGATTTGATTGTT 1194
Query 1200 TGTTGAACTAAAT 1212
|||||||||||||
Sbjct 1195 TGTTGAACTAAAT 1207
Score = 78.7 bits (42), Expect = 1e-13
Identities = 42/42 (100%), Gaps = 0/42 (0%)
Strand=Plus/Plus
Query 1269 TTTTAGTGAGAATGCTTTTGTTTTGTCAAGATGTGATAAAAT 1310
||||||||||||||||||||||||||||||||||||||||||
Sbjct 1308 TTTTAGTGAGAATGCTTTTGTTTTGTCAAGATGTGATAAAAT 1349
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 64457499780
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5